Wall clock time and date at job start Tue Mar 31 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53165 * 1 3 3 C 1.54197 * 107.72008 * 2 1 4 4 C 1.52687 * 109.59653 * 117.23059 * 2 1 3 5 5 N 1.46876 * 109.70097 * 71.11471 * 4 2 1 6 6 C 1.46905 * 110.97837 * 188.96370 * 5 4 2 7 7 C 1.53006 * 109.46684 * 169.99849 * 6 5 4 8 8 H 1.09000 * 109.47050 * 55.00009 * 7 6 5 9 9 C 1.47194 * 109.47252 * 294.99861 * 7 6 5 10 10 N 5.41835 * 61.73232 * 151.17721 * 2 1 3 11 11 C 1.52999 * 109.46626 * 174.99707 * 7 6 5 12 12 C 1.50709 * 109.46788 * 184.99743 * 11 7 6 13 13 H 1.07993 * 119.99723 * 0.02562 * 12 11 7 14 14 C 1.37877 * 119.99763 * 179.97438 * 12 11 7 15 15 N 1.31514 * 119.99690 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47648 * 89.99498 * 16 14 12 18 18 H 1.48502 * 109.47223 * 209.99608 * 16 14 12 19 19 H 1.48509 * 109.47279 * 329.99360 * 16 14 12 20 20 C 1.46881 * 109.48186 * 66.12368 * 5 4 2 21 21 C 1.52691 * 109.65022 * 293.78242 * 20 5 4 22 22 C 1.53160 * 109.59491 * 289.09828 * 21 20 5 23 23 C 1.54186 * 107.98832 * 171.99857 * 21 20 5 24 24 C 1.51972 * 110.94916 * 241.55485 * 2 1 3 25 25 H 1.08996 * 109.47557 * 302.77111 * 1 2 3 26 26 H 1.08999 * 109.47076 * 62.77090 * 1 2 3 27 27 H 1.09001 * 109.47121 * 182.76746 * 1 2 3 28 28 H 1.09001 * 109.46749 * 178.28447 * 3 2 1 29 29 H 1.08995 * 109.47139 * 298.28146 * 3 2 1 30 30 H 1.08998 * 109.47405 * 58.28438 * 3 2 1 31 31 H 1.09081 * 109.60068 * 311.07030 * 4 2 1 32 32 H 1.09069 * 109.60778 * 191.20279 * 4 2 1 33 33 H 1.08995 * 109.47608 * 50.00222 * 6 5 4 34 34 H 1.09000 * 109.47033 * 289.99762 * 6 5 4 35 35 H 1.08993 * 109.47768 * 305.00075 * 11 7 6 36 36 H 1.09005 * 109.47260 * 65.00844 * 11 7 6 37 37 H 0.97008 * 119.99868 * 180.02562 * 15 14 12 38 38 H 1.09077 * 109.35727 * 53.97799 * 20 5 4 39 39 H 1.09063 * 109.35359 * 173.57197 * 20 5 4 40 40 H 1.08998 * 109.47660 * 184.26868 * 22 21 20 41 41 H 1.08998 * 109.47358 * 304.27361 * 22 21 20 42 42 H 1.09000 * 109.47116 * 64.27100 * 22 21 20 43 43 H 1.08997 * 109.47109 * 298.41778 * 23 21 20 44 44 H 1.09000 * 109.46912 * 58.41275 * 23 21 20 45 45 H 1.09003 * 109.47538 * 178.40962 * 23 21 20 46 46 H 1.10135 * 108.74677 * 40.70326 * 24 2 1 47 47 H 1.10159 * 108.69817 * 156.04209 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5316 0.0000 0.0000 3 6 2.0010 1.4688 0.0000 4 6 2.0438 -0.6582 1.2790 5 7 1.7882 -2.1037 1.2286 6 6 2.0733 -2.7337 2.5247 7 6 1.5648 -4.1768 2.5130 8 1 1.9994 -4.7083 1.6664 9 6 0.0977 -4.1791 2.3932 10 7 -1.0344 -4.1810 2.3007 11 6 1.9714 -4.8712 3.8143 12 6 1.5788 -6.3249 3.7518 13 1 1.0887 -6.7144 2.8718 14 6 1.8462 -7.1576 4.8176 15 7 1.5040 -8.4263 4.7629 16 14 2.6945 -6.4839 6.3394 17 1 1.6732 -5.9931 7.2992 18 1 3.4960 -7.5595 6.9765 19 1 3.5889 -5.3633 5.9524 20 6 2.5970 -2.7072 0.1614 21 6 2.1213 -2.1943 -1.1959 22 6 0.7506 -2.7954 -1.5206 23 6 3.1158 -2.6869 -2.2663 24 6 2.0750 -0.6760 -1.2479 25 1 -0.3634 0.5562 0.8640 26 1 -0.3633 0.4702 -0.9138 27 1 -0.3633 -1.0265 0.0496 28 1 3.0900 1.5022 0.0308 29 1 1.6478 1.9631 -0.9049 30 1 1.5970 1.9794 0.8742 31 1 1.5305 -0.2307 2.1414 32 1 3.1160 -0.4838 1.3764 33 1 1.5716 -2.1782 3.3170 34 1 3.1487 -2.7288 2.7023 35 1 3.0503 -4.7916 3.9469 36 1 1.4659 -4.3942 4.6540 37 1 1.6918 -9.0121 5.5129 38 1 3.6446 -2.4403 0.3067 39 1 2.4937 -3.7923 0.1993 40 1 0.4471 -2.4887 -2.5215 41 1 0.8111 -3.8828 -1.4765 42 1 0.0180 -2.4426 -0.7947 43 1 4.1042 -2.2763 -2.0604 44 1 3.1630 -3.7757 -2.2445 45 1 2.7831 -2.3573 -3.2506 46 1 1.4632 -0.3701 -2.1111 47 1 3.0918 -0.2982 -1.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342377258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:50 Heat of formation + Delta-G solvation = -0.731409 kcal Electronic energy + Delta-G solvation = -23023.553842 eV Core-core repulsion = 20012.144062 eV Total energy + Delta-G solvation = -3011.409780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.14031 -36.95918 -35.00638 -34.81550 -33.37167 -31.60815 -27.78384 -27.64043 -26.71507 -26.68728 -26.41624 -24.48156 -21.60027 -21.43550 -19.93872 -18.03597 -16.84910 -16.70635 -15.80321 -15.10337 -14.82421 -14.53475 -14.37663 -14.31385 -13.64599 -13.41097 -13.29833 -13.15553 -12.58672 -12.49100 -12.36100 -12.15912 -12.09689 -11.94353 -11.82628 -11.64123 -11.56934 -11.53307 -11.33441 -11.19591 -10.90614 -10.76367 -10.62622 -10.46410 -10.33416 -10.20690 -10.00695 -9.92717 -9.66377 -9.30059 -8.60851 -8.18721 -6.09844 -4.10266 3.27206 3.34685 3.35125 3.73364 3.82500 3.97023 4.38856 4.48878 4.71171 4.72697 4.85241 4.93192 5.08308 5.14156 5.25236 5.30042 5.37631 5.48332 5.51801 5.53732 5.58925 5.61310 5.67000 5.72809 5.76607 5.81923 5.85338 5.87379 5.92643 5.95778 5.99448 6.07233 6.10403 6.19149 6.23510 6.28684 6.31744 6.39627 6.44141 6.70206 6.95915 7.10226 7.19763 7.20239 7.64937 8.41879 8.59672 8.94051 9.50173 11.03308 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.004509 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.637695 B = 6208.082369 C = 6426.027630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.144 4.144 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.058 3.942 7 C 0.021 3.979 8 H 0.104 0.896 9 C 0.255 3.745 10 N -0.472 5.472 11 C -0.005 4.005 12 C -0.526 4.526 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.263 1.263 20 C 0.057 3.943 21 C -0.053 4.053 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.091 4.091 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 18.332 -11.460 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.053 4.053 3 C -0.202 4.202 4 C -0.064 4.064 5 N -0.251 5.251 6 C -0.071 4.071 7 C -0.001 4.001 8 H 0.122 0.878 9 C -0.062 4.062 10 N -0.149 5.149 11 C -0.044 4.044 12 C -0.564 4.564 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.071 4.071 21 C -0.053 4.053 22 C -0.195 4.195 23 C -0.203 4.203 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.417 18.082 -11.612 21.760 hybrid contribution 1.750 0.251 1.112 2.089 sum 5.167 18.333 -10.500 21.750 Atomic orbital electron populations 1.21956 0.93992 1.03029 1.00467 1.20394 0.96341 0.94129 0.94467 1.22202 1.00695 0.95676 1.01646 1.22126 0.98354 0.88363 0.97516 1.62421 1.55287 1.02828 1.04551 1.22272 0.99502 0.94391 0.90928 1.18972 0.82760 0.95223 1.03120 0.87801 1.28659 0.94712 0.91258 0.91621 1.80988 1.13207 1.10327 1.10330 1.19646 0.97330 0.96708 0.90757 1.21025 1.39870 0.91467 1.04065 0.90795 1.24983 0.95093 0.94679 0.98311 1.69909 1.47170 1.04590 1.31870 0.86825 0.80178 0.79012 0.83561 1.20246 1.21286 1.18782 1.22271 0.94246 1.00104 0.90456 1.20389 0.96157 0.94498 0.94266 1.21950 0.96434 1.00435 1.00633 1.22202 0.98434 1.01408 0.98247 1.21363 1.00620 0.93980 0.96857 0.93288 0.93594 0.90844 0.92997 0.92731 0.92678 0.90963 0.94923 0.90270 0.92983 0.94622 0.96139 0.92590 0.94737 0.89937 0.93696 0.92892 0.91119 0.93019 0.92330 0.92794 0.92385 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.07 37.24 0.30 -1.18 16 2 C -0.05 -0.52 0.76 -154.48 -0.12 -0.64 16 3 C -0.14 -1.19 8.13 37.78 0.31 -0.89 16 4 C 0.06 0.71 4.05 -4.00 -0.02 0.69 16 5 N -0.53 -6.71 3.95 -234.92 -0.93 -7.64 16 6 C 0.06 0.81 4.30 -3.82 -0.02 0.79 16 7 C 0.02 0.38 2.18 -93.41 -0.20 0.17 16 8 H 0.10 1.79 6.26 -51.93 -0.32 1.46 16 9 C 0.25 5.25 13.67 -20.76 -0.28 4.97 16 10 N -0.47 -10.65 18.54 42.15 0.78 -9.87 16 11 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 12 C -0.53 -14.19 9.15 -34.44 -0.32 -14.50 16 13 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 16 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 20 C 0.06 0.68 3.92 -3.99 -0.02 0.66 16 21 C -0.05 -0.56 0.76 -154.48 -0.12 -0.67 16 22 C -0.14 -1.63 8.11 37.24 0.30 -1.33 16 23 C -0.15 -1.35 8.14 37.78 0.31 -1.04 16 24 C -0.09 -0.88 3.63 -27.77 -0.10 -0.98 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.95 5.42 -51.93 -0.28 0.67 16 28 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.80 7.91 -51.88 -0.41 0.39 16 32 H 0.03 0.34 7.96 -51.89 -0.41 -0.07 16 33 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 36 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.03 0.39 7.96 -51.89 -0.41 -0.02 16 39 H 0.08 1.06 6.07 -51.89 -0.31 0.75 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 42 H 0.07 0.96 5.39 -51.93 -0.28 0.68 16 43 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.55 7.90 -51.28 -0.41 0.14 16 47 H 0.05 0.49 7.60 -51.27 -0.39 0.10 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -30.14 359.13 -7.42 -37.57 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.63 Total: -2.89 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.16 Total: -12.25 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.63 Total: -43.85 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.14 -7.42 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342377258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.835 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds