Wall clock time and date at job start Tue Mar 31 2020 00:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00063 * 2 1 4 4 N 1.46508 * 109.47195 * 124.69859 * 3 2 1 5 5 C 1.36741 * 127.13351 * 93.72279 * 4 3 2 6 6 C 1.50696 * 126.34749 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46909 * 239.70916 * 6 5 4 8 8 C 1.53001 * 109.47160 * 119.71194 * 6 5 4 9 9 N 1.30290 * 107.30150 * 179.73691 * 5 4 3 10 10 N 1.28529 * 110.05769 * 0.26420 * 9 5 4 11 11 C 1.31215 * 109.85844 * 0.02562 * 10 9 5 12 12 N 1.38578 * 126.47283 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00224 * 307.15950 * 12 11 10 14 14 C 1.46898 * 111.00487 * 71.11824 * 12 11 10 15 15 H 1.08997 * 109.47512 * 54.99709 * 14 12 11 16 16 C 1.53009 * 109.46607 * 294.99974 * 14 12 11 17 17 C 1.50700 * 109.47576 * 175.00276 * 14 12 11 18 18 H 1.08003 * 119.99802 * 359.97438 * 17 14 12 19 19 C 1.37877 * 120.00036 * 179.97438 * 17 14 12 20 20 N 1.31511 * 120.00180 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 119.99983 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46892 * 59.99915 * 21 19 17 23 23 H 1.48502 * 109.47127 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47260 * 300.00250 * 21 19 17 25 25 H 1.07996 * 120.00438 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00171 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00482 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47259 * 4.70274 * 3 2 1 29 29 H 1.08999 * 109.47341 * 244.69885 * 3 2 1 30 30 H 1.09001 * 109.47366 * 359.70801 * 6 5 4 31 31 H 1.09001 * 109.47101 * 60.00463 * 7 6 5 32 32 H 1.09001 * 109.47712 * 300.00367 * 7 6 5 33 33 H 1.08995 * 109.47252 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.46953 * 299.99992 * 8 6 5 35 35 H 1.09003 * 109.47254 * 60.00116 * 8 6 5 36 36 H 1.09000 * 109.47242 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.46716 * 60.60010 * 13 12 11 38 38 H 1.08999 * 109.47484 * 180.60365 * 13 12 11 39 39 H 1.09003 * 109.46673 * 300.60035 * 13 12 11 40 40 H 1.09002 * 109.46767 * 179.97438 * 16 14 12 41 41 H 1.08996 * 109.46935 * 299.99514 * 16 14 12 42 42 H 1.08995 * 109.46867 * 59.99970 * 16 14 12 43 43 H 0.96997 * 120.00178 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9886 1.3349 1.1356 5 6 4.3061 0.9690 1.1368 6 6 5.0910 0.4536 -0.0418 7 6 5.6240 -0.9456 0.2729 8 6 6.2640 1.3945 -0.3243 9 7 4.7587 1.1544 2.3445 10 7 3.8226 1.6038 3.1018 11 6 2.7132 1.7298 2.4124 12 7 1.4942 2.1849 2.8891 13 6 1.0839 1.4367 4.0849 14 6 1.5408 3.6278 3.1612 15 1 1.8652 4.1563 2.2648 16 6 2.5269 3.9005 4.2990 17 6 0.1692 4.1085 3.5593 18 1 -0.6549 3.4120 3.6051 19 6 -0.0337 5.4376 3.8649 20 7 0.9699 6.2857 3.8096 21 14 -1.7341 6.0337 4.3576 22 1 -2.1767 5.3132 5.5784 23 1 -1.6866 7.4920 4.6339 24 1 -2.6906 5.7696 3.2528 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3581 2.1319 0.0843 29 1 2.6255 1.4002 -0.9291 30 1 4.4434 0.4072 -0.9174 31 1 4.7884 -1.6160 0.4741 32 1 6.2716 -0.8994 1.1485 33 1 6.1913 -1.3186 -0.5797 34 1 5.8842 2.3913 -0.5485 35 1 6.9116 1.4408 0.5513 36 1 6.8319 1.0215 -1.1765 37 1 1.8282 1.5701 4.8700 38 1 0.1193 1.8069 4.4319 39 1 0.9999 0.3779 3.8398 40 1 2.5618 4.9712 4.5006 41 1 2.2025 3.3721 5.1954 42 1 3.5190 3.5528 4.0111 43 1 0.8273 7.2206 4.0250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350667547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:14 Heat of formation + Delta-G solvation = 106.560627 kcal Electronic energy + Delta-G solvation = -22852.447762 eV Core-core repulsion = 19742.150170 eV Total energy + Delta-G solvation = -3110.297591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47077 -37.28929 -35.98817 -35.25904 -32.81663 -32.37471 -29.18129 -28.22472 -27.20133 -26.64030 -25.19142 -25.17954 -23.12677 -21.48002 -20.37684 -19.44911 -19.24426 -16.77976 -16.37733 -15.80750 -15.51618 -15.20380 -14.65884 -14.44431 -14.13216 -13.71154 -13.52839 -13.19316 -12.80758 -12.33925 -12.32167 -12.16933 -11.72962 -11.49021 -11.45847 -11.29480 -11.22587 -11.10125 -11.05516 -10.90380 -10.76662 -10.53460 -10.14764 -10.12140 -9.85418 -9.67911 -9.50190 -8.90224 -8.46196 -8.36696 -7.63743 -6.07153 -4.13599 2.01544 2.28946 2.93909 3.28418 3.33527 3.34844 3.41220 4.33783 4.44903 4.68260 4.77683 4.80867 4.91598 5.07546 5.11709 5.24684 5.26353 5.58160 5.64353 5.66642 5.78076 5.80898 5.82675 5.89561 5.98842 6.13101 6.20404 6.37406 6.43101 6.48473 6.51917 6.64189 6.69912 6.87364 7.08291 7.11547 7.18326 7.55810 7.67109 7.76892 7.94084 8.26762 8.49373 8.89528 9.33515 9.51158 10.99533 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.005344 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.709572 B = 5237.954431 C = 5799.589245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.182 4.182 3 C 0.143 3.857 4 N -0.467 5.467 5 C 0.161 3.839 6 C 0.001 3.999 7 C -0.138 4.138 8 C -0.141 4.141 9 N -0.291 5.291 10 N -0.317 5.317 11 C 0.379 3.621 12 N -0.468 5.468 13 C 0.049 3.951 14 C 0.225 3.775 15 H 0.034 0.966 16 C -0.173 4.173 17 C -0.507 4.507 18 H 0.065 0.935 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -12.099 -10.495 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.160 5.160 5 C -0.107 4.107 6 C -0.020 4.020 7 C -0.196 4.196 8 C -0.199 4.199 9 N -0.131 5.131 10 N -0.160 5.160 11 C 0.023 3.977 12 N -0.195 5.195 13 C -0.099 4.099 14 C 0.120 3.880 15 H 0.052 0.948 16 C -0.232 4.232 17 C -0.546 4.546 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.127 -11.902 -9.654 15.871 hybrid contribution -1.388 0.570 -0.223 1.517 sum 2.739 -11.332 -9.877 15.279 Atomic orbital electron populations 1.23962 0.95596 1.02546 0.96601 1.22943 0.96378 0.97458 1.03290 1.20844 0.92172 0.97986 0.87021 1.46368 1.10102 1.49212 1.10297 1.24532 0.82569 1.05500 0.98072 1.19450 0.95364 0.95891 0.91305 1.21775 1.01261 0.94222 1.02390 1.21801 0.97175 0.98688 1.02259 1.73870 1.23962 1.15953 0.99287 1.74747 0.96776 1.19088 1.25375 1.22888 0.93444 0.98935 0.82431 1.59393 1.18275 1.08477 1.33306 1.22186 1.01892 0.95382 0.90395 1.19381 0.96337 0.77550 0.94722 0.94783 1.22428 0.97472 1.04155 0.99150 1.20962 0.93545 0.93698 1.46391 0.91697 1.24909 0.97099 0.96602 0.95364 1.69899 1.30519 1.03706 1.48597 0.86526 0.84041 0.77575 0.79047 1.20179 1.21318 1.20233 0.87498 0.88169 0.87420 0.87513 0.88908 0.90163 0.92840 0.91288 0.91885 0.92596 0.91250 0.91877 0.94073 0.89462 0.93955 0.89595 0.94903 0.94882 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 14.32 29.02 0.42 -1.27 16 2 C -0.18 -2.19 9.85 -36.02 -0.35 -2.55 16 3 C 0.14 1.96 6.39 -5.19 -0.03 1.92 16 4 N -0.47 -8.19 2.79 -115.36 -0.32 -8.52 16 5 C 0.16 2.70 6.58 -154.02 -1.01 1.69 16 6 C 0.00 0.01 3.28 -91.77 -0.30 -0.29 16 7 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 8 C -0.14 -1.55 9.18 37.16 0.34 -1.21 16 9 N -0.29 -5.93 12.18 32.99 0.40 -5.52 16 10 N -0.32 -7.17 9.85 30.31 0.30 -6.88 16 11 C 0.38 8.04 6.20 -318.88 -1.98 6.07 16 12 N -0.47 -10.31 4.77 -176.08 -0.84 -11.15 16 13 C 0.05 1.00 8.69 60.07 0.52 1.53 16 14 C 0.22 5.72 2.32 -68.86 -0.16 5.56 16 15 H 0.03 0.97 8.11 -51.93 -0.42 0.55 16 16 C -0.17 -4.48 8.19 37.16 0.30 -4.17 16 17 C -0.51 -13.43 7.89 -34.44 -0.27 -13.70 16 18 H 0.06 1.68 6.76 -52.48 -0.35 1.32 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -25.12 11.32 55.43 0.63 -24.50 16 21 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H 0.11 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.10 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.11 1.61 7.79 -51.93 -0.40 1.21 16 29 H 0.09 1.00 7.07 -51.93 -0.37 0.63 16 30 H 0.08 0.79 6.86 -51.93 -0.36 0.43 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.88 6.35 -51.93 -0.33 0.55 16 38 H 0.09 1.78 6.43 -51.93 -0.33 1.45 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.03 0.82 6.46 -51.93 -0.34 0.49 16 42 H 0.03 0.85 5.97 -51.93 -0.31 0.54 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -30.85 346.26 -8.80 -39.64 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.88 Total: 1.88 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.28 Total: -5.94 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.16 Total: -56.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -8.80 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350667547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.205 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds