Wall clock time and date at job start Tue Mar 31 2020 00:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47243 * 2 1 4 4 C 1.36737 * 127.13424 * 83.73695 * 3 2 1 5 5 C 1.50693 * 126.34811 * 359.93967 * 4 3 2 6 6 C 1.53779 * 113.61465 * 219.13999 * 5 4 3 7 7 C 1.53957 * 87.01901 * 220.04661 * 6 5 4 8 8 C 1.53774 * 113.61599 * 121.53210 * 5 4 3 9 9 N 1.30292 * 107.30485 * 179.97438 * 4 3 2 10 10 N 1.28530 * 110.05140 * 359.97438 * 9 4 3 11 11 C 1.31215 * 109.86051 * 359.74668 * 10 9 4 12 12 N 1.38588 * 126.47159 * 180.25616 * 11 10 9 13 13 C 1.46895 * 110.99963 * 242.36117 * 12 11 10 14 14 C 1.46900 * 110.99959 * 6.31851 * 12 11 10 15 15 H 1.09001 * 109.47368 * 54.99705 * 14 12 11 16 16 C 1.53001 * 109.46794 * 294.99501 * 14 12 11 17 17 C 1.50704 * 109.47091 * 174.99716 * 14 12 11 18 18 H 1.08001 * 119.99651 * 359.97438 * 17 14 12 19 19 C 1.37869 * 119.99907 * 179.97438 * 17 14 12 20 20 N 1.31507 * 120.00479 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99726 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47081 * 90.00208 * 21 19 17 23 23 H 1.48499 * 109.47072 * 210.00134 * 21 19 17 24 24 H 1.48492 * 109.47119 * 329.99848 * 21 19 17 25 25 H 1.09004 * 109.46598 * 53.10343 * 1 2 3 26 26 H 1.08995 * 109.46807 * 173.09892 * 1 2 3 27 27 H 1.09000 * 109.46594 * 293.10185 * 1 2 3 28 28 H 1.09000 * 109.47074 * 120.00435 * 2 1 3 29 29 H 1.09006 * 109.46671 * 240.00306 * 2 1 3 30 30 H 1.09001 * 112.84967 * 350.33494 * 5 4 3 31 31 H 1.08993 * 113.61635 * 334.56665 * 6 5 4 32 32 H 1.08998 * 113.61580 * 105.47442 * 6 5 4 33 33 H 1.08995 * 113.54074 * 270.80914 * 7 6 5 34 34 H 1.08999 * 113.74061 * 139.94373 * 7 6 5 35 35 H 1.09003 * 113.61805 * 254.53407 * 8 5 4 36 36 H 1.09005 * 113.61412 * 25.34831 * 8 5 4 37 37 H 1.08991 * 109.47426 * 51.85443 * 13 12 11 38 38 H 1.09003 * 109.47205 * 171.85700 * 13 12 11 39 39 H 1.09006 * 109.47219 * 291.85120 * 13 12 11 40 40 H 1.08997 * 109.46904 * 60.00452 * 16 14 12 41 41 H 1.09005 * 109.46675 * 179.97438 * 16 14 12 42 42 H 1.08991 * 109.47478 * 300.00090 * 16 14 12 43 43 H 0.97004 * 120.00583 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1815 2.1991 1.0836 5 6 1.8889 1.8482 2.5196 6 6 1.2540 2.9990 3.3179 7 6 2.1505 2.5707 4.4940 8 6 3.1087 1.9793 3.4467 9 7 2.6360 3.3384 0.6443 10 7 2.7707 3.2961 -0.6332 11 6 2.4114 2.1160 -1.0805 12 7 2.4249 1.6965 -2.4013 13 6 1.0698 1.3673 -2.8629 14 6 3.0455 2.7070 -3.2683 15 1 4.0407 2.9459 -2.8932 16 6 2.1851 3.9722 -3.2735 17 6 3.1537 2.1672 -4.6711 18 1 2.7974 1.1727 -4.8960 19 6 3.7074 2.9428 -5.6674 20 7 4.1408 4.1539 -5.3937 21 14 3.8408 2.2739 -7.4065 22 1 2.6112 2.6177 -8.1647 23 1 5.0210 2.8744 -8.0786 24 1 3.9964 0.7980 -7.3585 25 1 -0.3633 0.6170 -0.8219 26 1 -0.3633 -1.0202 -0.1235 27 1 -0.3632 0.4032 0.9453 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.3606 0.9005 2.6245 31 1 1.4924 3.9870 2.9244 32 1 0.1892 2.8635 3.5076 33 1 1.6930 1.8213 5.1397 34 1 2.5739 3.4070 5.0502 35 1 3.5392 1.0218 3.7400 36 1 3.8559 2.6871 3.0876 37 1 0.4007 2.2007 -2.6494 38 1 1.0870 1.1811 -3.9368 39 1 0.7162 0.4755 -2.3452 40 1 2.1070 4.3626 -2.2589 41 1 2.6459 4.7221 -3.9165 42 1 1.1901 3.7333 -3.6486 43 1 4.5307 4.6995 -6.0946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358729693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:02 Heat of formation + Delta-G solvation = 113.850473 kcal Electronic energy + Delta-G solvation = -22798.529789 eV Core-core repulsion = 19688.548309 eV Total energy + Delta-G solvation = -3109.981480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47413 -38.63592 -37.16748 -35.45329 -32.76997 -30.44680 -29.78757 -28.66558 -26.28233 -25.66877 -25.14754 -24.68707 -23.85644 -21.80672 -20.60695 -19.62597 -18.81376 -17.00478 -16.22569 -15.87244 -15.57468 -15.37051 -14.89083 -14.56859 -14.47823 -13.61436 -13.29152 -13.14142 -12.85048 -12.52426 -12.44121 -12.33111 -12.12309 -11.51100 -11.48281 -11.28905 -11.12794 -10.94250 -10.88740 -10.70671 -10.63961 -10.53249 -10.33768 -10.11777 -10.05152 -9.72668 -9.63517 -8.84721 -8.82370 -8.39192 -7.32190 -6.02109 -4.09564 2.28477 2.73704 3.29107 3.36083 3.38736 3.45260 4.34677 4.43503 4.53911 4.60995 4.63467 4.68128 4.83914 4.89810 4.95482 5.14930 5.28960 5.34698 5.47261 5.51703 5.58557 5.67436 5.76340 5.79318 5.85516 5.93121 5.96427 6.03008 6.08183 6.25895 6.41048 6.49434 6.55329 6.86577 7.06808 7.16443 7.29251 7.53287 7.69149 7.76955 8.00070 8.31508 8.48852 8.92184 9.45277 9.55113 11.04123 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.004555 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.923469 B = 6146.172750 C = 6671.328031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.487 5.487 4 C 0.159 3.841 5 C -0.022 4.022 6 C -0.122 4.122 7 C -0.141 4.141 8 C -0.124 4.124 9 N -0.286 5.286 10 N -0.316 5.316 11 C 0.382 3.618 12 N -0.454 5.454 13 C 0.030 3.970 14 C 0.229 3.771 15 H 0.052 0.948 16 C -0.174 4.174 17 C -0.515 4.515 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 -8.619 15.558 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.184 5.184 4 C -0.108 4.108 5 C -0.043 4.043 6 C -0.160 4.160 7 C -0.179 4.179 8 C -0.163 4.163 9 N -0.125 5.125 10 N -0.160 5.160 11 C 0.027 3.973 12 N -0.177 5.177 13 C -0.117 4.117 14 C 0.125 3.875 15 H 0.069 0.931 16 C -0.233 4.233 17 C -0.554 4.554 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.521 5.521 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.050 -7.470 15.364 18.481 hybrid contribution -0.760 -1.167 -1.141 1.800 sum -7.810 -8.637 14.222 18.381 Atomic orbital electron populations 1.22277 0.94441 1.03148 1.03191 1.21758 0.95229 0.79999 1.04691 1.46276 1.51984 1.13450 1.06645 1.24276 1.06514 0.89341 0.90708 1.20863 0.99219 0.99777 0.84466 1.22963 0.98778 0.99020 0.95231 1.22828 0.97824 1.00905 0.96295 1.22962 0.96281 1.01654 0.95386 1.73854 1.15988 1.18343 1.04292 1.74869 1.24929 1.14138 1.02067 1.23271 0.97948 0.87054 0.89051 1.59302 1.19159 1.43800 0.95451 1.22512 0.87260 0.98617 1.03303 1.19358 0.93721 0.84870 0.89564 0.93051 1.22452 0.98176 1.01928 1.00734 1.21032 1.41147 1.01040 0.92142 0.91850 1.24888 0.95191 0.94819 0.98962 1.69922 1.40258 1.08779 1.33180 0.86491 0.77589 0.79087 0.84182 1.20721 1.21164 1.19861 0.91354 0.90537 0.92076 0.89478 0.88106 0.88367 0.88526 0.91471 0.90297 0.90961 0.91430 0.88984 0.95255 0.88491 0.92971 0.93728 0.89252 0.96199 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.73 37.16 0.36 -1.33 16 2 C 0.11 1.27 5.63 -4.04 -0.02 1.25 16 3 N -0.49 -8.18 2.81 -114.08 -0.32 -8.50 16 4 C 0.16 2.65 7.11 -154.02 -1.09 1.55 16 5 C -0.02 -0.26 4.05 -90.97 -0.37 -0.63 16 6 C -0.12 -1.30 7.63 -25.83 -0.20 -1.49 16 7 C -0.14 -1.23 8.09 -25.83 -0.21 -1.44 16 8 C -0.12 -1.32 7.63 -25.92 -0.20 -1.52 16 9 N -0.29 -5.93 11.83 32.99 0.39 -5.54 16 10 N -0.32 -7.44 9.13 30.31 0.28 -7.16 16 11 C 0.38 8.15 6.69 -318.88 -2.13 6.01 16 12 N -0.45 -10.03 4.74 -176.08 -0.83 -10.86 16 13 C 0.03 0.57 7.97 60.06 0.48 1.05 16 14 C 0.23 5.98 2.04 -68.86 -0.14 5.84 16 15 H 0.05 1.54 8.04 -51.93 -0.42 1.12 16 16 C -0.17 -4.50 8.28 37.16 0.31 -4.20 16 17 C -0.51 -13.92 7.76 -34.44 -0.27 -14.19 16 18 H 0.06 1.66 6.85 -52.49 -0.36 1.30 16 19 C 0.06 1.76 5.30 -17.83 -0.09 1.66 16 20 N -0.88 -25.47 11.32 55.43 0.63 -24.84 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.82 7.80 -51.93 -0.41 0.41 16 29 H 0.10 1.26 7.46 -51.93 -0.39 0.87 16 30 H 0.10 0.92 7.57 -51.93 -0.39 0.53 16 31 H 0.10 1.24 7.81 -51.93 -0.41 0.84 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.03 0.56 6.93 -51.93 -0.36 0.20 16 38 H 0.10 1.90 6.24 -51.93 -0.32 1.58 16 39 H 0.05 0.79 4.65 -51.93 -0.24 0.55 16 40 H 0.04 1.15 5.65 -51.93 -0.29 0.86 16 41 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 42 H 0.02 0.48 6.67 -51.93 -0.35 0.13 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -31.82 331.94 -10.13 -41.95 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.67 Total: 1.37 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.58 Total: -7.43 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.14 Total: -56.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.82 -10.13 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358729693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.801 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds