Wall clock time and date at job start Tue Mar 31 2020 00:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47243 * 2 1 4 4 C 1.36737 * 127.13424 * 83.73695 * 3 2 1 5 5 C 1.50693 * 126.34811 * 359.93967 * 4 3 2 6 6 C 1.53779 * 113.61465 * 219.13999 * 5 4 3 7 7 C 1.53957 * 87.01901 * 220.04661 * 6 5 4 8 8 C 1.53774 * 113.61599 * 121.53210 * 5 4 3 9 9 N 1.30292 * 107.30485 * 179.97438 * 4 3 2 10 10 N 1.28530 * 110.05140 * 359.97438 * 9 4 3 11 11 C 1.31215 * 109.86051 * 359.74668 * 10 9 4 12 12 N 1.38588 * 126.47159 * 180.25616 * 11 10 9 13 13 C 1.46895 * 110.99963 * 242.36117 * 12 11 10 14 14 C 1.46900 * 110.99959 * 6.31851 * 12 11 10 15 15 H 1.09001 * 109.47368 * 54.99705 * 14 12 11 16 16 C 1.53001 * 109.46794 * 294.99501 * 14 12 11 17 17 C 1.50704 * 109.47091 * 174.99716 * 14 12 11 18 18 H 1.08001 * 119.99651 * 359.97438 * 17 14 12 19 19 C 1.37869 * 119.99907 * 179.97438 * 17 14 12 20 20 N 1.31507 * 120.00479 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99726 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47081 * 90.00208 * 21 19 17 23 23 H 1.48499 * 109.47072 * 210.00134 * 21 19 17 24 24 H 1.48492 * 109.47119 * 329.99848 * 21 19 17 25 25 H 1.09004 * 109.46598 * 53.10343 * 1 2 3 26 26 H 1.08995 * 109.46807 * 173.09892 * 1 2 3 27 27 H 1.09000 * 109.46594 * 293.10185 * 1 2 3 28 28 H 1.09000 * 109.47074 * 120.00435 * 2 1 3 29 29 H 1.09006 * 109.46671 * 240.00306 * 2 1 3 30 30 H 1.09001 * 112.84967 * 350.33494 * 5 4 3 31 31 H 1.08993 * 113.61635 * 334.56665 * 6 5 4 32 32 H 1.08998 * 113.61580 * 105.47442 * 6 5 4 33 33 H 1.08995 * 113.54074 * 270.80914 * 7 6 5 34 34 H 1.08999 * 113.74061 * 139.94373 * 7 6 5 35 35 H 1.09003 * 113.61805 * 254.53407 * 8 5 4 36 36 H 1.09005 * 113.61412 * 25.34831 * 8 5 4 37 37 H 1.08991 * 109.47426 * 51.85443 * 13 12 11 38 38 H 1.09003 * 109.47205 * 171.85700 * 13 12 11 39 39 H 1.09006 * 109.47219 * 291.85120 * 13 12 11 40 40 H 1.08997 * 109.46904 * 60.00452 * 16 14 12 41 41 H 1.09005 * 109.46675 * 179.97438 * 16 14 12 42 42 H 1.08991 * 109.47478 * 300.00090 * 16 14 12 43 43 H 0.97004 * 120.00583 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1815 2.1991 1.0836 5 6 1.8889 1.8482 2.5196 6 6 1.2540 2.9990 3.3179 7 6 2.1505 2.5707 4.4940 8 6 3.1087 1.9793 3.4467 9 7 2.6360 3.3384 0.6443 10 7 2.7707 3.2961 -0.6332 11 6 2.4114 2.1160 -1.0805 12 7 2.4249 1.6965 -2.4013 13 6 1.0698 1.3673 -2.8629 14 6 3.0455 2.7070 -3.2683 15 1 4.0407 2.9459 -2.8932 16 6 2.1851 3.9722 -3.2735 17 6 3.1537 2.1672 -4.6711 18 1 2.7974 1.1727 -4.8960 19 6 3.7074 2.9428 -5.6674 20 7 4.1408 4.1539 -5.3937 21 14 3.8408 2.2739 -7.4065 22 1 2.6112 2.6177 -8.1647 23 1 5.0210 2.8744 -8.0786 24 1 3.9964 0.7980 -7.3585 25 1 -0.3633 0.6170 -0.8219 26 1 -0.3633 -1.0202 -0.1235 27 1 -0.3632 0.4032 0.9453 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.3606 0.9005 2.6245 31 1 1.4924 3.9870 2.9244 32 1 0.1892 2.8635 3.5076 33 1 1.6930 1.8213 5.1397 34 1 2.5739 3.4070 5.0502 35 1 3.5392 1.0218 3.7400 36 1 3.8559 2.6871 3.0876 37 1 0.4007 2.2007 -2.6494 38 1 1.0870 1.1811 -3.9368 39 1 0.7162 0.4755 -2.3452 40 1 2.1070 4.3626 -2.2589 41 1 2.6459 4.7221 -3.9165 42 1 1.1901 3.7333 -3.6486 43 1 4.5307 4.6995 -6.0946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358729693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:02 Heat of formation + Delta-G solvation = 96.088141 kcal Electronic energy + Delta-G solvation = -22799.300022 eV Core-core repulsion = 19688.548309 eV Total energy + Delta-G solvation = -3110.751712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.93258 -39.64817 -38.81983 -36.68954 -34.78774 -31.57384 -31.33784 -30.51067 -27.64523 -27.19337 -26.50904 -26.13318 -24.88016 -23.44968 -21.90271 -21.12158 -19.93626 -18.47802 -17.97417 -17.31745 -17.02399 -16.78708 -16.26129 -15.89170 -15.68091 -15.18069 -14.89351 -14.44692 -14.08544 -13.75838 -13.48888 -13.37048 -13.30736 -13.16711 -12.95091 -12.88369 -12.67170 -12.54617 -12.35575 -12.19302 -12.03891 -11.98094 -11.72601 -11.45101 -11.37422 -11.23900 -11.00798 -10.86047 -10.51258 -10.42238 -9.00444 -8.12600 -6.28359 0.89051 1.39664 1.45221 1.46437 1.56933 1.93336 2.41777 3.04047 3.16925 3.39081 3.63443 3.76633 3.77418 3.98398 4.01648 4.05557 4.12707 4.29394 4.36210 4.47133 4.53931 4.63832 4.73752 4.77032 4.80833 4.92283 4.92935 4.97901 5.07752 5.08499 5.11702 5.16041 5.21031 5.24332 5.28478 5.46418 5.59448 5.63287 5.65595 5.88501 6.10043 6.21283 6.61455 6.81239 7.40669 7.94270 8.94170 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.004555 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.923469 B = 6146.172750 C = 6671.328031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.478 5.478 4 C 0.185 3.815 5 C -0.026 4.026 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.127 4.127 9 N -0.332 5.332 10 N -0.368 5.368 11 C 0.361 3.639 12 N -0.456 5.456 13 C 0.036 3.964 14 C 0.242 3.758 15 H -0.001 1.001 16 C -0.154 4.154 17 C -0.525 4.525 18 H 0.072 0.928 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 -11.886 17.118 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.174 5.174 4 C -0.084 4.084 5 C -0.047 4.047 6 C -0.164 4.164 7 C -0.159 4.159 8 C -0.166 4.166 9 N -0.170 5.170 10 N -0.212 5.212 11 C 0.003 3.997 12 N -0.179 5.179 13 C -0.111 4.111 14 C 0.136 3.864 15 H 0.017 0.983 16 C -0.214 4.214 17 C -0.564 4.564 18 H 0.090 0.910 19 C -0.188 4.188 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.186 1.186 25 H 0.064 0.936 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.895 -10.769 16.951 21.964 hybrid contribution -0.211 -0.176 -1.460 1.486 sum -9.106 -10.945 15.491 21.040 Atomic orbital electron populations 1.22263 0.92338 1.04870 1.02915 1.22263 0.96920 0.77282 1.06275 1.46552 1.50934 1.14912 1.05020 1.25317 1.02713 0.87892 0.92509 1.21385 1.00527 1.01842 0.80942 1.22940 1.00440 0.97060 0.95935 1.22806 0.96172 1.01459 0.95498 1.22937 0.95650 1.02206 0.95783 1.73757 1.18883 1.21003 1.03380 1.74699 1.26378 1.16359 1.03778 1.23140 0.99380 0.87690 0.89501 1.59185 1.20816 1.42273 0.95630 1.22566 0.85463 0.99876 1.03189 1.18912 0.91592 0.85907 0.90034 0.98272 1.22220 0.98152 1.01370 0.99653 1.21323 1.41074 1.01407 0.92567 0.90954 1.25812 0.94648 0.94940 1.03368 1.70092 1.41057 1.10204 1.34504 0.85361 0.77594 0.78807 0.78678 1.19768 1.21296 1.18646 0.93595 0.87178 0.90947 0.85925 0.88614 0.84492 0.91714 0.89369 0.87094 0.90816 0.89186 0.92187 0.96268 0.89366 0.88891 0.94281 0.92077 0.95456 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.73 71.98 0.70 -1.88 16 2 C 0.09 1.92 5.63 86.38 0.49 2.41 16 3 N -0.48 -15.58 2.81 -514.84 -1.45 -17.03 16 4 C 0.18 6.02 7.11 137.64 0.98 7.00 16 5 C -0.03 -0.54 4.05 -11.02 -0.04 -0.58 16 6 C -0.13 -2.39 7.63 31.18 0.24 -2.16 16 7 C -0.12 -1.72 8.09 31.18 0.25 -1.46 16 8 C -0.13 -2.41 7.63 31.12 0.24 -2.17 16 9 N -0.33 -14.37 11.83 -49.54 -0.59 -14.96 16 10 N -0.37 -18.33 9.13 -58.01 -0.53 -18.86 16 11 C 0.36 15.77 6.69 260.11 1.74 17.51 16 12 N -0.46 -20.64 4.74 -711.00 -3.37 -24.01 16 13 C 0.04 1.33 7.97 127.69 1.02 2.35 16 14 C 0.24 13.25 2.04 44.17 0.09 13.34 16 15 H 0.00 -0.04 8.04 -2.39 -0.02 -0.06 16 16 C -0.15 -8.48 8.28 71.98 0.60 -7.88 16 17 C -0.53 -29.04 7.76 25.60 0.20 -28.84 16 18 H 0.07 3.78 6.85 -2.91 -0.02 3.76 16 19 C 0.01 0.65 5.30 84.65 0.45 1.10 16 20 N -0.92 -55.11 11.32 21.44 0.24 -54.86 16 21 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 25 H 0.04 0.94 6.34 -2.38 -0.02 0.93 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.12 1.69 7.80 -2.39 -0.02 1.67 16 29 H 0.10 2.11 7.46 -2.38 -0.02 2.09 16 30 H 0.14 1.80 7.57 -2.39 -0.02 1.78 16 31 H 0.06 1.68 7.81 -2.39 -0.02 1.66 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.54 8.09 -2.38 -0.02 1.52 16 37 H 0.02 0.73 6.93 -2.39 -0.02 0.71 16 38 H 0.09 3.42 6.24 -2.39 -0.01 3.41 16 39 H 0.09 2.64 4.65 -2.38 -0.01 2.63 16 40 H 0.04 2.15 5.65 -2.39 -0.01 2.14 16 41 H 0.06 3.67 6.07 -2.38 -0.01 3.66 16 42 H 0.03 1.38 6.67 -2.39 -0.02 1.37 16 43 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -75.48 331.94 4.28 -71.20 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.00 Total: 14.29 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.94 Total: -1.26 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.69 Total: -129.71 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.48 4.28 -71.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358729693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.293 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds