Wall clock time and date at job start Tue Mar 31 2020 00:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47499 * 2 1 4 4 C 1.53002 * 109.46671 * 240.00021 * 2 1 3 5 5 C 1.53000 * 109.47358 * 120.00212 * 2 1 3 6 6 H 1.09000 * 109.50872 * 180.02562 * 5 2 1 7 7 C 1.53115 * 109.53698 * 300.17664 * 5 2 1 8 8 C 1.53093 * 109.15806 * 177.61200 * 7 5 2 9 9 C 1.53032 * 109.29313 * 302.33892 * 8 7 5 10 10 N 1.46843 * 109.51708 * 59.18003 * 9 8 7 11 11 C 1.46897 * 111.00255 * 174.16657 * 10 9 8 12 12 C 1.52997 * 109.47504 * 294.09657 * 11 10 9 13 13 H 1.09006 * 109.47022 * 56.94872 * 12 11 10 14 14 C 1.47202 * 109.46695 * 296.95454 * 12 11 10 15 15 N 6.74454 * 120.42454 * 146.56086 * 2 1 3 16 16 C 1.52995 * 109.47350 * 176.95086 * 12 11 10 17 17 C 1.50701 * 109.47134 * 184.99678 * 16 12 11 18 18 H 1.07996 * 119.99814 * 0.02562 * 17 16 12 19 19 C 1.37883 * 119.99964 * 179.97438 * 17 16 12 20 20 N 1.31509 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46944 * 120.00569 * 21 19 17 24 24 H 1.48502 * 109.46925 * 240.00403 * 21 19 17 25 25 C 1.46846 * 111.20039 * 298.26789 * 10 9 8 26 26 H 1.09006 * 109.46314 * 299.99616 * 1 2 3 27 27 H 1.08990 * 109.47236 * 59.99490 * 1 2 3 28 28 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47665 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47390 * 300.00308 * 3 2 1 31 31 H 1.09005 * 109.47155 * 60.00045 * 3 2 1 32 32 H 1.08998 * 109.47169 * 299.99650 * 4 2 1 33 33 H 1.09000 * 109.47424 * 60.00152 * 4 2 1 34 34 H 1.09004 * 109.46951 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.52207 * 297.52266 * 7 5 2 36 36 H 1.09007 * 109.52357 * 57.64025 * 7 5 2 37 37 H 1.09008 * 109.49117 * 182.39371 * 8 7 5 38 38 H 1.08999 * 109.50382 * 62.28942 * 8 7 5 39 39 H 1.09005 * 109.46107 * 299.17289 * 9 8 7 40 40 H 1.08998 * 109.46361 * 179.19697 * 9 8 7 41 41 H 1.08997 * 109.47052 * 54.10054 * 11 10 9 42 42 H 1.09005 * 109.47139 * 174.09440 * 11 10 9 43 43 H 1.08996 * 109.47158 * 304.99790 * 16 12 11 44 44 H 1.09008 * 109.47158 * 65.00107 * 16 12 11 45 45 H 0.97000 * 119.99911 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46748 * 181.75552 * 25 10 9 47 47 H 1.09007 * 109.46035 * 301.72372 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1301 -0.7212 1.2500 7 6 1.5269 -0.0033 2.5004 8 6 1.9924 -0.7658 3.7437 9 6 1.4841 -2.2075 3.6724 10 7 2.0029 -2.8512 2.4588 11 6 1.6494 -4.2766 2.4267 12 6 2.3669 -5.0059 3.5643 13 1 2.1046 -4.5425 4.5154 14 6 3.8223 -4.9196 3.3614 15 7 4.9455 -4.8531 3.2048 16 6 1.9400 -6.4750 3.5777 17 6 2.5504 -7.1646 4.7706 18 1 3.1795 -6.6103 5.4512 19 6 2.3048 -8.5029 4.9935 20 7 1.5382 -9.1777 4.1649 21 14 3.0609 -9.3575 6.4725 22 1 3.8758 -8.3844 7.2433 23 1 1.9813 -9.8946 7.3392 24 1 3.9261 -10.4727 6.0110 25 6 1.5303 -2.1644 1.2500 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2491 35 1 1.9230 1.0119 2.5261 36 1 0.4376 0.0313 2.4796 37 1 1.5945 -0.2833 4.6365 38 1 3.0816 -0.7656 3.7841 39 1 0.3943 -2.2074 3.6459 40 1 1.8259 -2.7569 4.5495 41 1 0.5717 -4.3864 2.5473 42 1 1.9535 -4.7049 1.4716 43 1 0.8535 -6.5371 3.6388 44 1 2.2809 -6.9608 2.6634 45 1 1.3658 -10.1193 4.3216 46 1 1.9056 -2.6826 0.3675 47 1 0.4403 -2.1645 1.2348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361541543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:02 Heat of formation + Delta-G solvation = -6.797532 kcal Electronic energy + Delta-G solvation = -22445.597753 eV Core-core repulsion = 19433.924926 eV Total energy + Delta-G solvation = -3011.672827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.97371 -37.41782 -35.70184 -33.82025 -32.85112 -31.23235 -29.73355 -27.77284 -27.50533 -26.68317 -24.38027 -23.25562 -22.10574 -21.61103 -20.06897 -18.38408 -16.64204 -16.51357 -15.91155 -15.10177 -14.74597 -14.60821 -14.44419 -14.34153 -13.95988 -13.72621 -13.29981 -13.15197 -12.80574 -12.71300 -12.26199 -12.21070 -12.01351 -11.90076 -11.81849 -11.61498 -11.43171 -11.25550 -11.13295 -11.04312 -11.00788 -10.77235 -10.68716 -10.53653 -10.39379 -10.29484 -10.05905 -9.92240 -9.49503 -9.17510 -8.45020 -8.08292 -6.08706 -4.11544 3.29050 3.37290 3.42100 3.78051 3.88368 4.01621 4.42264 4.54242 4.63143 4.65998 4.95999 4.97498 5.02717 5.06878 5.27241 5.29588 5.38498 5.42429 5.47336 5.49527 5.57576 5.60521 5.64333 5.67295 5.74103 5.76883 5.78238 5.84720 5.91591 5.94207 6.01361 6.02721 6.06860 6.10527 6.18067 6.24381 6.33405 6.42734 6.47754 6.55211 7.27412 7.30205 7.44548 7.54928 7.86997 8.24790 8.64018 8.93554 9.53877 11.02280 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.003547 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.307309 B = 7892.548257 C = 8029.144711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.073 4.073 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.117 4.117 9 C 0.051 3.949 10 N -0.541 5.541 11 C 0.064 3.936 12 C 0.010 3.990 13 H 0.099 0.901 14 C 0.258 3.742 15 N -0.481 5.481 16 C 0.031 3.969 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.060 3.940 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 19.973 -7.338 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.091 4.091 6 H 0.095 0.905 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.077 4.077 10 N -0.266 5.266 11 C -0.065 4.065 12 C -0.012 4.012 13 H 0.117 0.883 14 C -0.059 4.059 15 N -0.158 5.158 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.068 4.068 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.156 19.935 -7.593 21.564 hybrid contribution -0.921 -0.768 0.849 1.470 sum -4.077 19.166 -6.744 20.723 Atomic orbital electron populations 1.21994 0.94852 1.01978 1.01445 1.20523 0.95526 0.95321 0.95048 1.21900 1.00969 0.95488 1.01485 1.21932 1.01132 1.00456 0.96622 1.21189 1.00864 0.93710 0.93381 0.90498 1.21731 1.00574 0.98726 0.94406 1.21577 1.01755 0.94755 0.97397 1.22157 0.96955 0.94949 0.93653 1.61914 1.60293 1.02386 1.01978 1.22202 0.98227 0.86507 0.99564 1.19251 0.81949 1.01341 0.98652 0.88320 1.28818 0.94797 0.90416 0.91844 1.80968 1.13232 1.11535 1.10065 1.19174 0.97633 0.85639 0.98322 1.21183 1.30414 0.94934 1.09732 0.92462 1.24954 0.95025 0.97470 0.96546 1.69947 1.37356 1.09050 1.36702 0.86543 0.79126 0.79686 0.82786 1.19656 1.20877 1.20965 1.22217 0.97415 0.94180 0.93000 0.92451 0.93065 0.92330 0.92737 0.92994 0.92453 0.92258 0.92977 0.92609 0.91978 0.92020 0.91810 0.91304 0.94876 0.90147 0.93042 0.90340 0.94514 0.95585 0.92876 0.90775 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.77 37.16 0.29 -0.89 16 2 C -0.06 -0.55 0.57 -154.51 -0.09 -0.64 16 3 C -0.14 -1.10 8.13 37.15 0.30 -0.80 16 4 C -0.14 -1.26 8.12 37.16 0.30 -0.95 16 5 C -0.07 -0.74 1.71 -90.54 -0.15 -0.90 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.12 4.57 -26.62 -0.12 -1.24 16 8 C -0.12 -1.26 6.09 -26.67 -0.16 -1.43 16 9 C 0.05 0.63 5.30 -3.84 -0.02 0.61 16 10 N -0.54 -7.46 4.30 -234.67 -1.01 -8.47 16 11 C 0.06 0.97 4.34 -3.83 -0.02 0.96 16 12 C 0.01 0.19 2.11 -93.41 -0.20 -0.01 16 13 H 0.10 1.75 6.30 -51.93 -0.33 1.42 16 14 C 0.26 5.50 13.62 -20.76 -0.28 5.22 16 15 N -0.48 -11.12 18.54 42.15 0.78 -10.34 16 16 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 17 C -0.52 -14.06 8.60 -34.44 -0.30 -14.36 16 18 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.06 0.69 4.04 -3.83 -0.02 0.68 16 26 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 6.41 -51.93 -0.33 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 6.50 -51.93 -0.34 0.09 16 32 H 0.06 0.54 6.45 -51.93 -0.33 0.20 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.54 6.58 -51.93 -0.34 0.20 16 36 H 0.06 0.57 6.31 -51.92 -0.33 0.24 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 1.07 6.16 -51.93 -0.32 0.75 16 41 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.08 1.22 7.99 -51.93 -0.41 0.80 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 47 H 0.04 0.40 6.39 -51.93 -0.33 0.06 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -29.52 357.23 -8.15 -37.67 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -8.33 Total: -4.21 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.68 Total: -11.53 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.51 Total: -43.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.52 -8.15 -37.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361541543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.873 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds