Wall clock time and date at job start Tue Mar 31 2020 00:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47499 * 2 1 4 4 C 1.53002 * 109.46671 * 240.00021 * 2 1 3 5 5 C 1.53000 * 109.47358 * 120.00212 * 2 1 3 6 6 H 1.09000 * 109.50872 * 180.02562 * 5 2 1 7 7 C 1.53115 * 109.53698 * 300.17664 * 5 2 1 8 8 C 1.53093 * 109.15806 * 177.61200 * 7 5 2 9 9 C 1.53032 * 109.29313 * 302.33892 * 8 7 5 10 10 N 1.46843 * 109.51708 * 59.18003 * 9 8 7 11 11 C 1.46897 * 111.00255 * 174.16657 * 10 9 8 12 12 C 1.52997 * 109.47504 * 294.09657 * 11 10 9 13 13 H 1.09006 * 109.47022 * 56.94872 * 12 11 10 14 14 C 1.47202 * 109.46695 * 296.95454 * 12 11 10 15 15 N 6.74454 * 120.42454 * 146.56086 * 2 1 3 16 16 C 1.52995 * 109.47350 * 176.95086 * 12 11 10 17 17 C 1.50701 * 109.47134 * 184.99678 * 16 12 11 18 18 H 1.07996 * 119.99814 * 0.02562 * 17 16 12 19 19 C 1.37883 * 119.99964 * 179.97438 * 17 16 12 20 20 N 1.31509 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46944 * 120.00569 * 21 19 17 24 24 H 1.48502 * 109.46925 * 240.00403 * 21 19 17 25 25 C 1.46846 * 111.20039 * 298.26789 * 10 9 8 26 26 H 1.09006 * 109.46314 * 299.99616 * 1 2 3 27 27 H 1.08990 * 109.47236 * 59.99490 * 1 2 3 28 28 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47665 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47390 * 300.00308 * 3 2 1 31 31 H 1.09005 * 109.47155 * 60.00045 * 3 2 1 32 32 H 1.08998 * 109.47169 * 299.99650 * 4 2 1 33 33 H 1.09000 * 109.47424 * 60.00152 * 4 2 1 34 34 H 1.09004 * 109.46951 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.52207 * 297.52266 * 7 5 2 36 36 H 1.09007 * 109.52357 * 57.64025 * 7 5 2 37 37 H 1.09008 * 109.49117 * 182.39371 * 8 7 5 38 38 H 1.08999 * 109.50382 * 62.28942 * 8 7 5 39 39 H 1.09005 * 109.46107 * 299.17289 * 9 8 7 40 40 H 1.08998 * 109.46361 * 179.19697 * 9 8 7 41 41 H 1.08997 * 109.47052 * 54.10054 * 11 10 9 42 42 H 1.09005 * 109.47139 * 174.09440 * 11 10 9 43 43 H 1.08996 * 109.47158 * 304.99790 * 16 12 11 44 44 H 1.09008 * 109.47158 * 65.00107 * 16 12 11 45 45 H 0.97000 * 119.99911 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46748 * 181.75552 * 25 10 9 47 47 H 1.09007 * 109.46035 * 301.72372 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1301 -0.7212 1.2500 7 6 1.5269 -0.0033 2.5004 8 6 1.9924 -0.7658 3.7437 9 6 1.4841 -2.2075 3.6724 10 7 2.0029 -2.8512 2.4588 11 6 1.6494 -4.2766 2.4267 12 6 2.3669 -5.0059 3.5643 13 1 2.1046 -4.5425 4.5154 14 6 3.8223 -4.9196 3.3614 15 7 4.9455 -4.8531 3.2048 16 6 1.9400 -6.4750 3.5777 17 6 2.5504 -7.1646 4.7706 18 1 3.1795 -6.6103 5.4512 19 6 2.3048 -8.5029 4.9935 20 7 1.5382 -9.1777 4.1649 21 14 3.0609 -9.3575 6.4725 22 1 3.8758 -8.3844 7.2433 23 1 1.9813 -9.8946 7.3392 24 1 3.9261 -10.4727 6.0110 25 6 1.5303 -2.1644 1.2500 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2491 35 1 1.9230 1.0119 2.5261 36 1 0.4376 0.0313 2.4796 37 1 1.5945 -0.2833 4.6365 38 1 3.0816 -0.7656 3.7841 39 1 0.3943 -2.2074 3.6459 40 1 1.8259 -2.7569 4.5495 41 1 0.5717 -4.3864 2.5473 42 1 1.9535 -4.7049 1.4716 43 1 0.8535 -6.5371 3.6388 44 1 2.2809 -6.9608 2.6634 45 1 1.3658 -10.1193 4.3216 46 1 1.9056 -2.6826 0.3675 47 1 0.4403 -2.1645 1.2348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361541543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:01 Heat of formation + Delta-G solvation = -22.063034 kcal Electronic energy + Delta-G solvation = -22446.259714 eV Core-core repulsion = 19433.924926 eV Total energy + Delta-G solvation = -3012.334788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86913 -38.67324 -37.04454 -35.56206 -34.31153 -32.70148 -30.66936 -28.80822 -28.13630 -28.03650 -25.68276 -24.30894 -23.51689 -23.04993 -20.97131 -19.17278 -18.49936 -18.11928 -17.08271 -16.49379 -16.02951 -15.72458 -15.42222 -15.16837 -15.08590 -14.67887 -14.49693 -14.34356 -14.14519 -14.08924 -13.73262 -13.50844 -13.13104 -13.01813 -12.92809 -12.76258 -12.68011 -12.51071 -12.45538 -12.41346 -12.29209 -11.95782 -11.91675 -11.74991 -11.56032 -11.36534 -11.26641 -11.15989 -10.82811 -10.75620 -10.55816 -9.13527 -8.19934 -6.28161 1.38717 1.41757 1.52353 2.06824 2.14727 2.41175 2.95054 3.15514 3.35838 3.77758 3.85970 3.91496 4.09139 4.16154 4.25748 4.32017 4.37573 4.53692 4.55361 4.61590 4.68964 4.72997 4.78616 4.85048 4.87885 4.89555 4.93473 5.00948 5.01491 5.09081 5.12621 5.14765 5.17007 5.24173 5.27611 5.33457 5.45365 5.46008 5.46306 5.60829 5.62419 5.69933 5.78749 6.12862 6.24652 6.30259 6.82835 6.93634 7.40434 8.91240 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.003547 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.307309 B = 7892.548257 C = 8029.144711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.068 4.068 6 H 0.056 0.944 7 C -0.112 4.112 8 C -0.114 4.114 9 C 0.047 3.953 10 N -0.555 5.555 11 C 0.074 3.926 12 C 0.021 3.979 13 H 0.115 0.885 14 C 0.268 3.732 15 N -0.515 5.515 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.949 3.051 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.285 1.285 25 C 0.061 3.939 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.001 0.999 45 H 0.264 0.736 46 H 0.067 0.933 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 21.523 -6.986 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.087 4.087 6 H 0.074 0.926 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.080 4.080 10 N -0.280 5.280 11 C -0.055 4.055 12 C -0.001 4.001 13 H 0.132 0.868 14 C -0.048 4.048 15 N -0.192 5.192 16 C 0.000 4.000 17 C -0.576 4.576 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.775 3.225 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.211 1.211 25 C -0.066 4.066 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.150 21.502 -7.239 23.064 hybrid contribution -0.603 -1.242 0.716 1.555 sum -4.752 20.260 -6.523 21.808 Atomic orbital electron populations 1.21970 0.94053 1.01833 1.02157 1.20493 0.96063 0.95569 0.93939 1.21881 1.00621 0.94894 1.02237 1.21935 1.00613 1.00323 0.97306 1.21136 0.99593 0.93147 0.94827 0.92561 1.21707 1.01132 0.98908 0.93161 1.21563 1.00682 0.94053 0.98892 1.22223 0.97636 0.95635 0.92510 1.61871 1.61118 1.01619 1.03399 1.22016 0.98443 0.87446 0.97630 1.19203 0.80668 0.99121 1.01071 0.86769 1.29303 0.95260 0.89470 0.90786 1.80962 1.14315 1.12536 1.11408 1.18989 0.97132 0.88030 0.95890 1.21565 1.30123 0.95373 1.10556 0.92883 1.25712 0.95581 0.98364 0.99074 1.70037 1.38584 1.09416 1.38267 0.85637 0.78525 0.78472 0.79910 1.19397 1.19705 1.21102 1.22250 0.97961 0.94710 0.91704 0.91907 0.92218 0.92873 0.93324 0.92110 0.91839 0.92873 0.91932 0.93453 0.90852 0.90988 0.90106 0.93031 0.93709 0.91242 0.91490 0.90839 0.94704 0.98089 0.92693 0.91477 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.77 71.98 0.56 -1.41 16 2 C -0.06 -0.93 0.57 -52.18 -0.03 -0.96 16 3 C -0.14 -1.89 8.13 71.98 0.58 -1.31 16 4 C -0.14 -2.36 8.12 71.98 0.58 -1.78 16 5 C -0.07 -1.30 1.71 -10.74 -0.02 -1.32 16 6 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 7 C -0.11 -1.88 4.57 30.66 0.14 -1.74 16 8 C -0.11 -2.26 6.09 30.64 0.19 -2.08 16 9 C 0.05 1.10 5.30 86.32 0.46 1.56 16 10 N -0.56 -14.75 4.30 -896.36 -3.86 -18.61 16 11 C 0.07 2.19 4.34 86.30 0.37 2.57 16 12 C 0.02 0.79 2.11 -12.60 -0.03 0.76 16 13 H 0.11 3.94 6.30 -2.38 -0.02 3.92 16 14 C 0.27 11.45 13.62 89.44 1.22 12.67 16 15 N -0.51 -23.96 18.54 20.01 0.37 -23.59 16 16 C 0.04 1.80 4.42 29.85 0.13 1.93 16 17 C -0.54 -28.87 8.60 25.60 0.22 -28.65 16 18 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 19 C 0.01 0.64 5.46 84.66 0.46 1.10 16 20 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 21 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 C 0.06 1.34 4.04 86.33 0.35 1.69 16 26 H 0.06 0.80 6.38 -2.38 -0.02 0.79 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.79 6.41 -2.39 -0.02 0.78 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.79 6.50 -2.38 -0.02 0.77 16 32 H 0.05 0.92 6.45 -2.39 -0.02 0.91 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 1.09 6.58 -2.38 -0.02 1.08 16 36 H 0.07 1.10 6.31 -2.38 -0.02 1.08 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.07 1.75 6.16 -2.39 -0.01 1.73 16 41 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 42 H 0.07 2.26 7.99 -2.38 -0.02 2.24 16 43 H 0.03 1.64 8.14 -2.39 -0.02 1.63 16 44 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 45 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.07 1.57 6.35 -2.39 -0.02 1.55 16 47 H 0.05 0.93 6.39 -2.38 -0.02 0.91 16 Total: -1.00 -62.36 357.23 4.94 -57.42 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.92 Total: 8.96 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 5.19 Total: -16.96 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -3.20 Total: -95.19 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -62.36 4.94 -57.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361541543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.359 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds