Wall clock time and date at job start Tue Mar 31 2020 00:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.52995 * 109.47428 * 240.00376 * 2 1 3 5 5 C 1.52995 * 109.47233 * 119.99478 * 2 1 3 6 6 H 1.09001 * 109.50262 * 180.02562 * 5 2 1 7 7 C 1.53124 * 109.50291 * 60.00758 * 5 2 1 8 8 C 1.53119 * 109.16432 * 182.36300 * 7 5 2 9 9 C 1.53043 * 109.27676 * 57.64916 * 8 7 5 10 10 N 1.46847 * 109.52442 * 300.82630 * 9 8 7 11 11 C 1.46900 * 110.99629 * 185.84150 * 10 9 8 12 12 C 1.53004 * 109.47036 * 163.93150 * 11 10 9 13 13 H 1.09000 * 109.47285 * 54.93231 * 12 11 10 14 14 C 1.47205 * 109.47136 * 294.93271 * 12 11 10 15 15 N 6.40132 * 122.87043 * 83.60396 * 2 1 3 16 16 C 1.53000 * 109.47339 * 174.93434 * 12 11 10 17 17 C 1.50701 * 109.46972 * 184.99845 * 16 12 11 18 18 H 1.07999 * 120.00379 * 359.97438 * 17 16 12 19 19 C 1.37882 * 119.99646 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99851 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99805 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47269 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47376 * 59.99974 * 21 19 17 24 24 H 1.48503 * 109.47104 * 299.99866 * 21 19 17 25 25 C 1.46843 * 111.20063 * 61.73978 * 10 9 8 26 26 H 1.08997 * 109.47351 * 299.99769 * 1 2 3 27 27 H 1.08991 * 109.47310 * 60.00323 * 1 2 3 28 28 H 1.09004 * 109.46458 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47383 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47089 * 299.99960 * 3 2 1 31 31 H 1.08996 * 109.47336 * 59.99603 * 3 2 1 32 32 H 1.09004 * 109.46867 * 299.99218 * 4 2 1 33 33 H 1.08991 * 109.47445 * 59.99384 * 4 2 1 34 34 H 1.09000 * 109.47450 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.52317 * 62.45476 * 7 5 2 36 36 H 1.09004 * 109.57110 * 302.29738 * 7 5 2 37 37 H 1.09006 * 109.49881 * 297.71644 * 8 7 5 38 38 H 1.08989 * 109.50759 * 177.59275 * 8 7 5 39 39 H 1.08998 * 109.45880 * 180.80869 * 9 8 7 40 40 H 1.08997 * 109.46111 * 60.83910 * 9 8 7 41 41 H 1.08999 * 109.47556 * 43.93213 * 11 10 9 42 42 H 1.09001 * 109.46939 * 283.92759 * 11 10 9 43 43 H 1.08997 * 109.47116 * 64.99610 * 16 12 11 44 44 H 1.08999 * 109.46500 * 305.00062 * 16 12 11 45 45 H 0.97001 * 120.00278 * 359.97438 * 20 19 17 46 46 H 1.09001 * 109.46145 * 58.27676 * 25 10 9 47 47 H 1.08999 * 109.46110 * 178.24600 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1300 -0.7210 1.2500 7 6 1.5302 -2.1650 1.2500 8 6 1.9956 -2.8617 2.5316 9 6 1.4839 -2.0819 3.7450 10 7 1.9997 -0.7078 3.6985 11 6 1.6429 0.0300 4.9176 12 6 2.5088 1.2869 5.0249 13 1 2.4078 1.8765 4.1138 14 6 3.9173 0.8986 5.2045 15 7 5.0043 0.5989 5.3430 16 6 2.0525 2.1197 6.2245 17 6 2.8219 3.4150 6.2586 18 1 3.5626 3.6233 5.5007 19 6 2.5802 4.3343 7.2574 20 7 1.6786 4.0805 8.1806 21 14 3.5334 5.9402 7.2993 22 1 3.0907 6.7485 8.4637 23 1 3.2830 6.6973 6.0466 24 1 4.9850 5.6512 7.4213 25 6 1.5270 -0.0035 2.4998 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1391 34 1 3.1301 -0.7207 -1.2495 35 1 1.9286 -2.6925 0.3834 36 1 0.4409 -2.1676 1.2090 37 1 3.0849 -2.8943 2.5530 38 1 1.5999 -3.8769 2.5583 39 1 1.8256 -2.5674 4.6591 40 1 0.3942 -2.0614 3.7304 41 1 1.8125 -0.6034 5.7884 42 1 0.5918 0.3154 4.8751 43 1 2.2362 1.5636 7.1438 44 1 0.9871 2.3321 6.1351 45 1 1.1833 3.2467 8.1586 46 1 0.4371 0.0073 2.4910 47 1 1.9002 1.0206 2.5095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361541545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:07 Heat of formation + Delta-G solvation = -10.829938 kcal Electronic energy + Delta-G solvation = -22710.720328 eV Core-core repulsion = 19698.872643 eV Total energy + Delta-G solvation = -3011.847685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00697 -37.37249 -35.87056 -34.05027 -33.03903 -30.97731 -29.89473 -27.69442 -27.46006 -26.39906 -24.09689 -23.43520 -22.23084 -21.72793 -20.11134 -18.40410 -17.13444 -16.59733 -15.96672 -15.08453 -14.75476 -14.65660 -14.34046 -14.02252 -13.79680 -13.67636 -13.58106 -13.29364 -12.93258 -12.72777 -12.33857 -12.10586 -12.07912 -11.97661 -11.78689 -11.64991 -11.52361 -11.32163 -11.15503 -11.06945 -10.97584 -10.83106 -10.67916 -10.40474 -10.37292 -10.17638 -10.11290 -9.92481 -9.81553 -8.65327 -8.39732 -8.15807 -6.42030 -4.12892 3.43429 3.46562 3.63890 3.70216 3.80289 3.95133 4.51563 4.55330 4.63425 4.68650 4.84668 4.93186 5.01441 5.04756 5.25497 5.36400 5.37001 5.39670 5.47179 5.52723 5.54976 5.55894 5.60300 5.69300 5.71104 5.75520 5.81994 5.84069 5.88403 5.93247 5.96847 6.00156 6.03204 6.07559 6.19770 6.20334 6.30454 6.34784 6.42015 6.46709 7.10658 7.18999 7.21746 7.28745 8.05314 8.36832 8.57393 8.80600 9.58160 10.98741 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004363 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.247112 B = 6415.957061 C = 7018.731148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.072 4.072 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.117 4.117 9 C 0.057 3.943 10 N -0.541 5.541 11 C 0.062 3.938 12 C 0.020 3.980 13 H 0.099 0.901 14 C 0.257 3.743 15 N -0.478 5.478 16 C 0.018 3.982 17 C -0.605 4.605 18 H 0.050 0.950 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 1.065 2.935 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.288 1.288 25 C 0.054 3.946 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.027 0.973 45 H 0.269 0.731 46 H 0.037 0.963 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -11.646 -16.923 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.091 4.091 6 H 0.095 0.905 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.071 4.071 10 N -0.265 5.265 11 C -0.067 4.067 12 C -0.002 4.002 13 H 0.117 0.883 14 C -0.060 4.060 15 N -0.155 5.155 16 C -0.021 4.021 17 C -0.643 4.643 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.545 5.545 21 Si 0.893 3.107 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.214 1.214 25 C -0.073 4.073 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.055 -10.718 -15.886 19.405 hybrid contribution -1.438 -1.231 -0.842 2.072 sum -4.493 -11.949 -16.728 21.043 Atomic orbital electron populations 1.21997 0.94877 1.01656 1.01775 1.20514 0.95505 0.95573 0.94769 1.21946 1.01207 0.95247 1.01925 1.21902 1.00976 1.00148 0.96801 1.21180 1.00885 0.94122 0.92911 0.90482 1.21741 1.00602 0.95620 0.97510 1.21581 1.01753 0.97898 0.94217 1.22053 0.96878 0.89370 0.98776 1.61890 1.60342 1.02022 1.02278 1.22217 0.97542 0.94716 0.92176 1.19039 0.82604 0.95333 1.03249 0.88288 1.28762 0.94573 0.91168 0.91462 1.80975 1.12831 1.11090 1.10575 1.19287 0.97092 0.94722 0.90993 1.21961 1.24232 1.03119 1.14957 0.93132 1.25779 0.97008 1.03092 0.92472 1.70804 1.22715 1.26924 1.34044 0.83588 0.75613 0.75228 0.76253 1.20690 1.21270 1.21435 1.22324 0.97471 0.98361 0.89148 0.92250 0.92977 0.92590 0.92557 0.92901 0.91987 0.92560 0.92932 0.92734 0.91890 0.92015 0.91269 0.91905 0.91017 0.95083 0.90462 0.92999 0.96551 0.95494 0.92077 0.94477 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.77 37.16 0.29 -0.99 16 2 C -0.06 -0.59 0.57 -154.51 -0.09 -0.68 16 3 C -0.15 -1.46 8.13 37.16 0.30 -1.16 16 4 C -0.14 -1.17 8.12 37.16 0.30 -0.87 16 5 C -0.07 -0.77 1.71 -90.54 -0.15 -0.92 16 6 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.12 -1.11 4.56 -26.61 -0.12 -1.23 16 8 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 9 C 0.06 0.67 5.44 -3.83 -0.02 0.65 16 10 N -0.54 -7.45 4.31 -234.67 -1.01 -8.46 16 11 C 0.06 0.95 4.34 -3.82 -0.02 0.93 16 12 C 0.02 0.38 2.23 -93.40 -0.21 0.17 16 13 H 0.10 1.81 6.49 -51.93 -0.34 1.47 16 14 C 0.26 5.55 13.67 -20.76 -0.28 5.27 16 15 N -0.48 -11.14 18.54 42.15 0.78 -10.35 16 16 C 0.02 0.41 3.74 -27.88 -0.10 0.31 16 17 C -0.60 -16.40 8.60 -34.44 -0.30 -16.70 16 18 H 0.05 1.38 7.59 -52.49 -0.40 0.99 16 19 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 20 N -0.91 -26.86 13.65 55.43 0.76 -26.10 16 21 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.05 0.67 3.88 -3.84 -0.01 0.65 16 26 H 0.06 0.56 6.41 -51.93 -0.33 0.22 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.46 6.38 -51.93 -0.33 0.13 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 36 H 0.06 0.56 6.32 -51.93 -0.33 0.24 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.54 8.14 -51.94 -0.42 0.12 16 39 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 1.18 7.87 -51.93 -0.41 0.78 16 42 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 44 H 0.03 0.62 8.01 -51.93 -0.42 0.21 16 45 H 0.27 7.78 7.22 -40.82 -0.29 7.49 16 46 H 0.04 0.44 6.39 -51.93 -0.33 0.11 16 47 H 0.08 1.09 4.76 -51.93 -0.25 0.84 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -30.24 356.29 -8.15 -38.39 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -8.29 Total: -3.45 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.68 Total: -15.44 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.53 Total: -44.91 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.24 -8.15 -38.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361541545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.560 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds