Wall clock time and date at job start Tue Mar 31 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.52995 * 109.47428 * 240.00376 * 2 1 3 5 5 C 1.52995 * 109.47233 * 119.99478 * 2 1 3 6 6 H 1.09001 * 109.50262 * 180.02562 * 5 2 1 7 7 C 1.53124 * 109.50291 * 60.00758 * 5 2 1 8 8 C 1.53119 * 109.16432 * 182.36300 * 7 5 2 9 9 C 1.53043 * 109.27676 * 57.64916 * 8 7 5 10 10 N 1.46847 * 109.52442 * 300.82630 * 9 8 7 11 11 C 1.46900 * 110.99629 * 185.84150 * 10 9 8 12 12 C 1.53004 * 109.47036 * 163.93150 * 11 10 9 13 13 H 1.09000 * 109.47285 * 54.93231 * 12 11 10 14 14 C 1.47205 * 109.47136 * 294.93271 * 12 11 10 15 15 N 6.40132 * 122.87043 * 83.60396 * 2 1 3 16 16 C 1.53000 * 109.47339 * 174.93434 * 12 11 10 17 17 C 1.50701 * 109.46972 * 184.99845 * 16 12 11 18 18 H 1.07999 * 120.00379 * 359.97438 * 17 16 12 19 19 C 1.37882 * 119.99646 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99851 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99805 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47269 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47376 * 59.99974 * 21 19 17 24 24 H 1.48503 * 109.47104 * 299.99866 * 21 19 17 25 25 C 1.46843 * 111.20063 * 61.73978 * 10 9 8 26 26 H 1.08997 * 109.47351 * 299.99769 * 1 2 3 27 27 H 1.08991 * 109.47310 * 60.00323 * 1 2 3 28 28 H 1.09004 * 109.46458 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47383 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47089 * 299.99960 * 3 2 1 31 31 H 1.08996 * 109.47336 * 59.99603 * 3 2 1 32 32 H 1.09004 * 109.46867 * 299.99218 * 4 2 1 33 33 H 1.08991 * 109.47445 * 59.99384 * 4 2 1 34 34 H 1.09000 * 109.47450 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.52317 * 62.45476 * 7 5 2 36 36 H 1.09004 * 109.57110 * 302.29738 * 7 5 2 37 37 H 1.09006 * 109.49881 * 297.71644 * 8 7 5 38 38 H 1.08989 * 109.50759 * 177.59275 * 8 7 5 39 39 H 1.08998 * 109.45880 * 180.80869 * 9 8 7 40 40 H 1.08997 * 109.46111 * 60.83910 * 9 8 7 41 41 H 1.08999 * 109.47556 * 43.93213 * 11 10 9 42 42 H 1.09001 * 109.46939 * 283.92759 * 11 10 9 43 43 H 1.08997 * 109.47116 * 64.99610 * 16 12 11 44 44 H 1.08999 * 109.46500 * 305.00062 * 16 12 11 45 45 H 0.97001 * 120.00278 * 359.97438 * 20 19 17 46 46 H 1.09001 * 109.46145 * 58.27676 * 25 10 9 47 47 H 1.08999 * 109.46110 * 178.24600 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1300 -0.7210 1.2500 7 6 1.5302 -2.1650 1.2500 8 6 1.9956 -2.8617 2.5316 9 6 1.4839 -2.0819 3.7450 10 7 1.9997 -0.7078 3.6985 11 6 1.6429 0.0300 4.9176 12 6 2.5088 1.2869 5.0249 13 1 2.4078 1.8765 4.1138 14 6 3.9173 0.8986 5.2045 15 7 5.0043 0.5989 5.3430 16 6 2.0525 2.1197 6.2245 17 6 2.8219 3.4150 6.2586 18 1 3.5626 3.6233 5.5007 19 6 2.5802 4.3343 7.2574 20 7 1.6786 4.0805 8.1806 21 14 3.5334 5.9402 7.2993 22 1 3.0907 6.7485 8.4637 23 1 3.2830 6.6973 6.0466 24 1 4.9850 5.6512 7.4213 25 6 1.5270 -0.0035 2.4998 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1391 34 1 3.1301 -0.7207 -1.2495 35 1 1.9286 -2.6925 0.3834 36 1 0.4409 -2.1676 1.2090 37 1 3.0849 -2.8943 2.5530 38 1 1.5999 -3.8769 2.5583 39 1 1.8256 -2.5674 4.6591 40 1 0.3942 -2.0614 3.7304 41 1 1.8125 -0.6034 5.7884 42 1 0.5918 0.3154 4.8751 43 1 2.2362 1.5636 7.1438 44 1 0.9871 2.3321 6.1351 45 1 1.1833 3.2467 8.1586 46 1 0.4371 0.0073 2.4910 47 1 1.9002 1.0206 2.5095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361541545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:06 Heat of formation + Delta-G solvation = -26.760102 kcal Electronic energy + Delta-G solvation = -22711.411112 eV Core-core repulsion = 19698.872643 eV Total energy + Delta-G solvation = -3012.538469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92632 -38.68721 -37.17283 -35.87197 -34.48409 -32.46853 -30.76651 -28.66691 -28.15207 -27.86299 -25.52517 -24.37392 -23.95799 -22.99825 -20.98982 -19.23892 -19.04316 -18.22372 -17.02641 -16.17540 -15.96187 -15.65979 -15.51524 -15.23841 -15.15033 -15.02064 -14.55129 -14.52711 -14.09390 -13.95326 -13.82450 -13.59669 -13.33365 -13.15328 -12.89404 -12.75572 -12.70721 -12.49471 -12.42831 -12.34222 -12.15470 -11.98188 -11.89214 -11.81533 -11.64644 -11.56328 -11.19413 -10.94437 -10.86583 -10.62530 -10.52984 -9.20977 -8.64233 -6.35181 1.53364 1.59785 1.78979 1.96674 2.04458 2.55814 2.87866 3.17358 3.26136 3.74975 3.77770 3.88263 4.09854 4.12103 4.19048 4.24152 4.31284 4.46016 4.52027 4.54069 4.59246 4.65916 4.71801 4.77574 4.83763 4.86350 4.87007 4.94435 4.99734 5.01447 5.09823 5.12802 5.15452 5.18438 5.20462 5.25892 5.30199 5.36898 5.42708 5.44776 5.60997 5.67699 5.92993 6.13086 6.19540 6.24492 6.61910 6.81505 7.42397 8.77835 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004363 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.247112 B = 6415.957061 C = 7018.731148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.067 4.067 6 H 0.055 0.945 7 C -0.112 4.112 8 C -0.113 4.113 9 C 0.055 3.945 10 N -0.556 5.556 11 C 0.072 3.928 12 C 0.030 3.970 13 H 0.109 0.891 14 C 0.266 3.734 15 N -0.510 5.510 16 C 0.022 3.978 17 C -0.615 4.615 18 H 0.044 0.956 19 C -0.028 4.028 20 N -0.935 5.935 21 Si 1.105 2.895 22 H -0.281 1.281 23 H -0.264 1.264 24 H -0.283 1.283 25 C 0.055 3.945 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.067 0.933 43 H -0.002 1.002 44 H 0.030 0.970 45 H 0.261 0.739 46 H 0.047 0.953 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -12.299 -18.616 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.196 4.196 5 C -0.086 4.086 6 H 0.074 0.926 7 C -0.150 4.150 8 C -0.151 4.151 9 C -0.072 4.072 10 N -0.280 5.280 11 C -0.057 4.057 12 C 0.008 3.992 13 H 0.127 0.873 14 C -0.050 4.050 15 N -0.188 5.188 16 C -0.017 4.017 17 C -0.653 4.653 18 H 0.062 0.938 19 C -0.227 4.227 20 N -0.572 5.572 21 Si 0.927 3.073 22 H -0.207 1.207 23 H -0.189 1.189 24 H -0.210 1.210 25 C -0.072 4.072 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.969 -11.391 -17.602 21.339 hybrid contribution -1.142 -1.052 -0.329 1.588 sum -5.111 -12.443 -17.931 22.416 Atomic orbital electron populations 1.21972 0.94028 1.02256 1.01778 1.20488 0.96087 0.94877 0.94578 1.21956 1.00593 0.96018 1.01862 1.21878 1.00610 1.00641 0.96437 1.21121 0.99548 0.95187 0.92780 0.92638 1.21720 1.01177 0.94495 0.97563 1.21571 1.00764 0.98877 0.93896 1.22128 0.97590 0.88034 0.99445 1.61842 1.61197 1.03026 1.01945 1.22033 0.97278 0.93130 0.93223 1.19007 0.81709 0.96860 1.01618 0.87311 1.29265 0.94964 0.90261 0.90549 1.80966 1.13878 1.12392 1.11535 1.19148 0.96838 0.93722 0.91944 1.22345 1.24016 1.04552 1.14372 0.93800 1.27048 0.97260 1.06132 0.92250 1.70909 1.24077 1.26975 1.35225 0.83075 0.74614 0.72401 0.77187 1.20673 1.18907 1.20956 1.22345 0.97967 0.97674 0.89259 0.93020 0.92239 0.91653 0.93539 0.91914 0.93080 0.91605 0.92138 0.93348 0.90694 0.90949 0.92899 0.89829 0.91389 0.93851 0.90594 0.91472 0.98410 0.95133 0.92920 0.93512 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.77 71.98 0.56 -1.60 16 2 C -0.06 -1.01 0.57 -52.18 -0.03 -1.04 16 3 C -0.15 -2.82 8.13 71.98 0.58 -2.24 16 4 C -0.14 -2.01 8.12 71.98 0.58 -1.43 16 5 C -0.07 -1.35 1.71 -10.74 -0.02 -1.37 16 6 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 7 C -0.11 -1.84 4.56 30.68 0.14 -1.70 16 8 C -0.11 -2.07 6.09 30.65 0.19 -1.89 16 9 C 0.06 1.19 5.44 86.33 0.47 1.66 16 10 N -0.56 -14.67 4.31 -896.37 -3.87 -18.54 16 11 C 0.07 2.14 4.34 86.30 0.37 2.52 16 12 C 0.03 1.13 2.23 -12.60 -0.03 1.10 16 13 H 0.11 3.93 6.49 -2.39 -0.02 3.91 16 14 C 0.27 11.50 13.67 89.44 1.22 12.73 16 15 N -0.51 -23.94 18.54 20.01 0.37 -23.57 16 16 C 0.02 1.04 3.74 29.85 0.11 1.15 16 17 C -0.61 -33.43 8.60 25.60 0.22 -33.21 16 18 H 0.04 2.40 7.59 -2.91 -0.02 2.38 16 19 C -0.03 -1.57 5.46 84.66 0.46 -1.11 16 20 N -0.93 -55.61 13.65 21.45 0.29 -55.32 16 21 Si 1.10 50.20 29.90 68.60 2.05 52.25 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 C 0.05 1.28 3.88 86.32 0.34 1.62 16 26 H 0.05 0.86 6.41 -2.39 -0.02 0.84 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.87 6.38 -2.38 -0.02 0.85 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.08 6.46 -2.39 -0.02 1.06 16 32 H 0.07 0.83 6.49 -2.38 -0.02 0.82 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.08 6.57 -2.39 -0.02 1.06 16 36 H 0.07 1.07 6.32 -2.39 -0.02 1.05 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.50 7.96 -2.39 -0.02 1.49 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 2.27 7.87 -2.39 -0.02 2.25 16 42 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 43 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16 44 H 0.03 1.41 8.01 -2.39 -0.02 1.39 16 45 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 46 H 0.05 1.01 6.39 -2.39 -0.02 0.99 16 47 H 0.07 1.74 4.76 -2.39 -0.01 1.73 16 Total: -1.00 -64.27 356.29 5.05 -59.22 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.02 Total: 10.75 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 5.18 Total: -24.81 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -3.20 Total: -97.42 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -64.27 5.05 -59.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361541545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.460 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds