Wall clock time and date at job start Tue Mar 31 2020 00:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 N 1.46496 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99883 * 269.99329 * 4 3 2 6 6 H 1.08001 * 119.99549 * 141.48569 * 5 4 3 7 7 C 1.38804 * 120.00313 * 321.48542 * 5 4 3 8 8 N 1.31627 * 120.00017 * 160.03117 * 7 5 4 9 9 Si 1.86804 * 120.00035 * 340.03390 * 7 5 4 10 10 H 1.48496 * 109.46851 * 95.24194 * 9 7 5 11 11 H 1.48497 * 109.47020 * 215.23865 * 9 7 5 12 12 H 1.48492 * 109.47284 * 335.24087 * 9 7 5 13 13 C 1.46505 * 120.00100 * 90.00265 * 4 3 2 14 14 C 1.50701 * 109.46846 * 275.53521 * 13 4 3 15 15 N 1.30682 * 126.42873 * 276.70768 * 14 13 4 16 16 N 1.28754 * 109.69669 * 179.61490 * 15 14 13 17 17 C 1.30098 * 109.59144 * 359.69406 * 16 15 14 18 18 N 1.35130 * 126.42801 * 96.71023 * 14 13 4 19 19 C 1.46314 * 127.25275 * 1.29551 * 18 14 13 20 20 C 1.53126 * 109.39096 * 207.60244 * 19 18 14 21 21 C 1.52797 * 109.69595 * 270.76117 * 20 19 18 22 22 C 1.52566 * 110.51225 * 61.41323 * 21 20 19 23 23 C 1.50673 * 127.32186 * 180.94514 * 17 16 15 24 24 H 1.08998 * 109.47142 * 300.00294 * 1 2 3 25 25 H 1.08996 * 109.46800 * 60.00125 * 1 2 3 26 26 H 1.09000 * 109.46565 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47142 * 239.99706 * 2 1 3 28 28 H 1.09004 * 109.46838 * 119.99570 * 2 1 3 29 29 H 1.09001 * 109.46967 * 59.99702 * 3 2 1 30 30 H 1.08993 * 109.46901 * 299.99966 * 3 2 1 31 31 H 0.97002 * 119.99838 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.46893 * 155.53380 * 13 4 3 33 33 H 1.09000 * 109.46634 * 35.53354 * 13 4 3 34 34 H 1.08997 * 109.48130 * 87.62883 * 19 18 14 35 35 H 1.08995 * 109.49724 * 327.59035 * 19 18 14 36 36 H 1.08999 * 109.43240 * 150.68991 * 20 19 18 37 37 H 1.08996 * 109.39378 * 30.80395 * 20 19 18 38 38 H 1.09004 * 109.26947 * 301.14914 * 21 20 19 39 39 H 1.08994 * 109.26656 * 181.68282 * 21 20 19 40 40 H 1.09001 * 109.46059 * 273.40287 * 22 21 20 41 41 H 1.09004 * 109.45809 * 153.45264 * 22 21 20 42 42 H 1.09001 * 109.52903 * 107.00716 * 23 17 16 43 43 H 1.09000 * 109.53313 * 346.85538 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4428 1.1869 6 1 5.0929 0.8603 1.2891 7 6 3.7212 2.1916 2.2578 8 7 4.1160 1.9086 3.4812 9 14 2.5311 3.6010 1.9630 10 1 1.1388 3.1213 2.1543 11 1 2.8137 4.6968 2.9245 12 1 2.6948 4.1051 0.5758 13 6 4.2381 1.4424 -1.2678 14 6 4.3707 0.0281 -1.7711 15 7 5.2775 -0.8416 -1.4119 16 7 5.0856 -1.9515 -2.0357 17 6 4.0479 -1.8414 -2.8126 18 7 3.5742 -0.5787 -2.6786 19 6 2.4341 0.0041 -3.3865 20 6 1.4411 -1.1034 -3.7498 21 6 1.7963 -1.6854 -5.1172 22 6 3.1907 -2.3039 -5.0891 23 6 3.4581 -2.9027 -3.7049 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7887 2.4317 4.2296 32 1 5.2297 1.8679 -1.1144 33 1 3.6958 2.0396 -2.0009 34 1 2.7824 0.4929 -4.2964 35 1 1.9435 0.7364 -2.7454 36 1 0.4330 -0.6902 -3.7823 37 1 1.4862 -1.8910 -2.9977 38 1 1.7700 -0.8916 -5.8639 39 1 1.0681 -2.4518 -5.3821 40 1 3.9334 -1.5350 -5.3017 41 1 3.2550 -3.0888 -5.8427 42 1 2.5223 -3.2607 -3.2758 43 1 4.1585 -3.7328 -3.7959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365083712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:54 Heat of formation + Delta-G solvation = 92.242941 kcal Electronic energy + Delta-G solvation = -23414.478635 eV Core-core repulsion = 20303.560182 eV Total energy + Delta-G solvation = -3110.918453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77271 -37.75854 -36.72238 -33.96683 -32.80136 -31.83937 -31.38666 -29.66492 -27.03920 -25.95792 -25.61834 -24.56157 -22.26361 -21.01949 -20.37592 -20.15637 -20.00242 -16.88371 -16.60221 -16.27775 -15.51164 -15.21774 -15.07732 -14.50468 -14.37082 -13.85946 -13.71138 -13.27689 -13.00676 -12.94540 -12.62649 -12.35239 -12.15156 -11.91697 -11.78843 -11.37954 -11.36189 -11.14918 -11.10886 -10.88502 -10.76515 -10.73439 -10.52640 -10.29103 -9.77662 -9.67384 -9.63745 -9.50672 -8.70192 -8.36895 -7.00176 -5.98414 -3.46756 2.31283 2.88213 3.26196 3.42406 3.45456 3.47644 4.30478 4.40898 4.47564 4.48479 4.56395 4.90109 4.92511 5.01266 5.02502 5.08097 5.25668 5.32833 5.40202 5.49381 5.50724 5.53580 5.59164 5.61601 5.73343 5.80923 5.86834 5.89338 5.96675 6.03557 6.23277 6.24525 6.34751 6.38535 6.44623 6.52700 6.74007 6.77339 6.99651 7.38297 8.01425 8.38891 8.94485 9.38649 9.67138 9.99688 11.16317 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.006242 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.211856 B = 4484.418502 C = 5050.941126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.134 3.866 4 N -0.588 5.588 5 C -0.269 4.269 6 H 0.087 0.913 7 C 0.040 3.960 8 N -0.896 5.896 9 Si 0.880 3.120 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.270 1.270 13 C 0.225 3.775 14 C 0.186 3.814 15 N -0.289 5.289 16 N -0.300 5.300 17 C 0.154 3.846 18 N -0.468 5.468 19 C 0.105 3.895 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.031 4.031 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 -4.609 -18.729 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.009 3.991 4 N -0.308 5.308 5 C -0.398 4.398 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.194 1.194 13 C 0.094 3.906 14 C -0.085 4.085 15 N -0.128 5.128 16 N -0.140 5.140 17 C -0.113 4.113 18 N -0.161 5.161 19 C -0.018 4.018 20 C -0.177 4.177 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.070 4.070 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.894 -5.112 -17.799 20.131 hybrid contribution -1.918 1.233 -0.550 2.345 sum -9.812 -3.880 -18.349 21.166 Atomic orbital electron populations 1.21742 0.97148 1.00631 1.01057 1.22101 0.93849 1.00185 1.02215 1.21326 0.84381 0.94302 0.99118 1.44128 1.00123 1.84901 1.01632 1.18863 1.10039 1.23946 0.86923 0.89545 1.25437 0.97877 0.97536 0.95227 1.69861 1.46036 1.39708 0.98029 0.86897 0.80391 0.83765 0.77895 1.21523 1.22891 1.19448 1.19342 0.99298 0.83894 0.88043 1.26751 0.89844 1.01201 0.90680 1.74399 1.21887 0.96510 1.20011 1.74098 1.13893 1.17873 1.08093 1.24418 0.96847 0.86903 1.03151 1.46147 1.25548 1.11223 1.33177 1.21916 0.85657 0.97002 0.97221 1.22000 0.98811 0.98457 0.98419 1.21584 0.97066 1.00608 0.96651 1.21596 0.97202 1.00806 0.96397 1.20066 1.00913 0.94017 0.92024 0.92951 0.93625 0.93528 0.93152 0.91402 0.92423 0.94641 0.92642 0.88516 0.92948 0.89966 0.88660 0.89764 0.89998 0.91494 0.91223 0.91673 0.90629 0.89628 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.71 6.06 -26.73 -0.16 -2.87 16 3 C 0.13 2.75 4.33 -4.04 -0.02 2.74 16 4 N -0.59 -13.52 2.06 -174.61 -0.36 -13.88 16 5 C -0.27 -7.51 9.90 -15.06 -0.15 -7.66 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 7 C 0.04 1.14 5.34 -17.43 -0.09 1.05 16 8 N -0.90 -27.43 13.97 55.49 0.78 -26.65 16 9 Si 0.88 21.66 24.92 -169.99 -4.24 17.43 16 10 H -0.29 -6.87 6.70 56.52 0.38 -6.49 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.22 4.40 6.02 -5.19 -0.03 4.36 16 14 C 0.19 3.63 6.85 -155.18 -1.06 2.57 16 15 N -0.29 -6.60 12.22 32.75 0.40 -6.20 16 16 N -0.30 -6.24 12.21 32.73 0.40 -5.84 16 17 C 0.15 2.50 6.93 -155.32 -1.08 1.43 16 18 N -0.47 -7.31 2.29 -110.89 -0.25 -7.56 16 19 C 0.11 1.18 5.20 -4.08 -0.02 1.15 16 20 C -0.14 -1.21 5.55 -26.77 -0.15 -1.36 16 21 C -0.12 -0.85 5.67 -27.06 -0.15 -1.00 16 22 C -0.12 -1.01 5.68 -26.87 -0.15 -1.17 16 23 C -0.03 -0.34 5.54 -27.81 -0.15 -0.49 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.90 5.29 -51.93 -0.27 0.63 16 28 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.06 1.32 3.20 -51.93 -0.17 1.16 16 30 H 0.04 0.62 7.37 -51.93 -0.38 0.24 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.10 1.95 7.99 -51.93 -0.42 1.53 16 33 H 0.05 0.85 7.41 -51.93 -0.39 0.46 16 34 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 35 H 0.10 1.11 6.58 -51.93 -0.34 0.77 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.85 5.69 -51.93 -0.30 0.56 16 38 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.86 6.33 -51.93 -0.33 0.53 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -33.81 326.71 -7.99 -41.80 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.79 Total: -0.90 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.85 Total: -3.11 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.96 Total: -60.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.24 Total: 17.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.81 -7.99 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365083712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.042 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds