Wall clock time and date at job start Tue Mar 31 2020 00:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 N 1.46496 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99883 * 269.99329 * 4 3 2 6 6 H 1.08001 * 119.99549 * 141.48569 * 5 4 3 7 7 C 1.38804 * 120.00313 * 321.48542 * 5 4 3 8 8 N 1.31627 * 120.00017 * 160.03117 * 7 5 4 9 9 Si 1.86804 * 120.00035 * 340.03390 * 7 5 4 10 10 H 1.48496 * 109.46851 * 95.24194 * 9 7 5 11 11 H 1.48497 * 109.47020 * 215.23865 * 9 7 5 12 12 H 1.48492 * 109.47284 * 335.24087 * 9 7 5 13 13 C 1.46505 * 120.00100 * 90.00265 * 4 3 2 14 14 C 1.50701 * 109.46846 * 275.53521 * 13 4 3 15 15 N 1.30682 * 126.42873 * 276.70768 * 14 13 4 16 16 N 1.28754 * 109.69669 * 179.61490 * 15 14 13 17 17 C 1.30098 * 109.59144 * 359.69406 * 16 15 14 18 18 N 1.35130 * 126.42801 * 96.71023 * 14 13 4 19 19 C 1.46314 * 127.25275 * 1.29551 * 18 14 13 20 20 C 1.53126 * 109.39096 * 207.60244 * 19 18 14 21 21 C 1.52797 * 109.69595 * 270.76117 * 20 19 18 22 22 C 1.52566 * 110.51225 * 61.41323 * 21 20 19 23 23 C 1.50673 * 127.32186 * 180.94514 * 17 16 15 24 24 H 1.08998 * 109.47142 * 300.00294 * 1 2 3 25 25 H 1.08996 * 109.46800 * 60.00125 * 1 2 3 26 26 H 1.09000 * 109.46565 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47142 * 239.99706 * 2 1 3 28 28 H 1.09004 * 109.46838 * 119.99570 * 2 1 3 29 29 H 1.09001 * 109.46967 * 59.99702 * 3 2 1 30 30 H 1.08993 * 109.46901 * 299.99966 * 3 2 1 31 31 H 0.97002 * 119.99838 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.46893 * 155.53380 * 13 4 3 33 33 H 1.09000 * 109.46634 * 35.53354 * 13 4 3 34 34 H 1.08997 * 109.48130 * 87.62883 * 19 18 14 35 35 H 1.08995 * 109.49724 * 327.59035 * 19 18 14 36 36 H 1.08999 * 109.43240 * 150.68991 * 20 19 18 37 37 H 1.08996 * 109.39378 * 30.80395 * 20 19 18 38 38 H 1.09004 * 109.26947 * 301.14914 * 21 20 19 39 39 H 1.08994 * 109.26656 * 181.68282 * 21 20 19 40 40 H 1.09001 * 109.46059 * 273.40287 * 22 21 20 41 41 H 1.09004 * 109.45809 * 153.45264 * 22 21 20 42 42 H 1.09001 * 109.52903 * 107.00716 * 23 17 16 43 43 H 1.09000 * 109.53313 * 346.85538 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4428 1.1869 6 1 5.0929 0.8603 1.2891 7 6 3.7212 2.1916 2.2578 8 7 4.1160 1.9086 3.4812 9 14 2.5311 3.6010 1.9630 10 1 1.1388 3.1213 2.1543 11 1 2.8137 4.6968 2.9245 12 1 2.6948 4.1051 0.5758 13 6 4.2381 1.4424 -1.2678 14 6 4.3707 0.0281 -1.7711 15 7 5.2775 -0.8416 -1.4119 16 7 5.0856 -1.9515 -2.0357 17 6 4.0479 -1.8414 -2.8126 18 7 3.5742 -0.5787 -2.6786 19 6 2.4341 0.0041 -3.3865 20 6 1.4411 -1.1034 -3.7498 21 6 1.7963 -1.6854 -5.1172 22 6 3.1907 -2.3039 -5.0891 23 6 3.4581 -2.9027 -3.7049 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7887 2.4317 4.2296 32 1 5.2297 1.8679 -1.1144 33 1 3.6958 2.0396 -2.0009 34 1 2.7824 0.4929 -4.2964 35 1 1.9435 0.7364 -2.7454 36 1 0.4330 -0.6902 -3.7823 37 1 1.4862 -1.8910 -2.9977 38 1 1.7700 -0.8916 -5.8639 39 1 1.0681 -2.4518 -5.3821 40 1 3.9334 -1.5350 -5.3017 41 1 3.2550 -3.0888 -5.8427 42 1 2.5223 -3.2607 -3.2758 43 1 4.1585 -3.7328 -3.7959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365083712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:53 Heat of formation + Delta-G solvation = 70.728697 kcal Electronic energy + Delta-G solvation = -23415.411563 eV Core-core repulsion = 20303.560182 eV Total energy + Delta-G solvation = -3111.851380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.13289 -38.62845 -38.43438 -35.14934 -34.43769 -33.64409 -32.53636 -31.00320 -28.36160 -27.44369 -26.98444 -25.52104 -24.01147 -22.54023 -21.74296 -21.36009 -20.80827 -18.82883 -17.77018 -17.71066 -17.13824 -16.29075 -16.10407 -15.90199 -15.71455 -15.24901 -14.93904 -14.84128 -14.30195 -14.13935 -13.98289 -13.74674 -13.41178 -13.09172 -12.95446 -12.84145 -12.71357 -12.39982 -12.26736 -12.19889 -11.99471 -11.86172 -11.82675 -11.72076 -11.41863 -11.35541 -10.99949 -10.84393 -10.66440 -9.93637 -8.93108 -8.18730 -5.65784 0.98335 1.30726 1.42631 1.54586 1.70606 1.98869 2.41874 3.03304 3.34197 3.36538 3.58222 3.68017 3.76217 3.88248 4.03618 4.10178 4.18935 4.24483 4.25536 4.36149 4.48641 4.55006 4.60234 4.67619 4.71605 4.74947 4.85015 4.91677 4.98851 5.01329 5.08379 5.12111 5.16493 5.19551 5.29070 5.33192 5.37887 5.41170 5.48342 5.93399 6.16727 6.19911 6.91731 7.55220 7.91402 7.95072 9.01099 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.006242 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.211856 B = 4484.418502 C = 5050.941126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.128 3.872 4 N -0.598 5.598 5 C -0.258 4.258 6 H 0.025 0.975 7 C -0.022 4.022 8 N -0.954 5.954 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.311 1.311 12 H -0.242 1.242 13 C 0.226 3.774 14 C 0.176 3.824 15 N -0.351 5.351 16 N -0.356 5.356 17 C 0.174 3.826 18 N -0.458 5.458 19 C 0.091 3.909 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.032 4.032 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.012 0.988 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.263 0.737 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 -3.779 -22.908 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.004 3.996 4 N -0.319 5.319 5 C -0.388 4.388 6 H 0.042 0.958 7 C -0.218 4.218 8 N -0.598 5.598 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.240 1.240 12 H -0.165 1.165 13 C 0.097 3.903 14 C -0.096 4.096 15 N -0.190 5.190 16 N -0.195 5.195 17 C -0.095 4.095 18 N -0.149 5.149 19 C -0.030 4.030 20 C -0.173 4.173 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.071 4.071 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.985 -4.292 -22.047 25.459 hybrid contribution -0.598 0.808 0.668 1.207 sum -12.583 -3.484 -21.379 25.051 Atomic orbital electron populations 1.21689 0.93513 1.02117 1.02438 1.21969 0.96928 0.98637 0.99926 1.21500 0.82465 0.95435 1.00192 1.44128 1.01361 1.85340 1.01072 1.18499 1.08508 1.22493 0.89329 0.95750 1.26180 1.00892 1.00291 0.94432 1.70037 1.49100 1.41345 0.99288 0.85647 0.78162 0.78917 0.78734 1.19921 1.23961 1.16492 1.19445 0.98846 0.84512 0.87544 1.26438 0.90447 1.00853 0.91851 1.74265 1.24535 0.98062 1.22149 1.73969 1.17059 1.17996 1.10457 1.25328 0.94979 0.87884 1.01302 1.46314 1.25856 1.10633 1.32114 1.22444 0.84673 0.98176 0.97706 1.22041 0.99329 0.97133 0.98795 1.21585 0.96155 1.01584 0.95950 1.21594 0.97987 1.01100 0.94660 1.20384 1.01240 0.92622 0.92888 0.93856 0.89869 0.92118 0.92314 0.96912 0.94531 0.89880 0.92783 0.90429 0.88061 0.87459 0.88410 0.87010 0.91831 0.89759 0.89159 0.93202 0.88200 0.87949 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.13 -4.90 6.06 30.60 0.19 -4.71 16 3 C 0.13 4.96 4.33 86.38 0.37 5.34 16 4 N -0.60 -27.57 2.06 -706.35 -1.46 -29.03 16 5 C -0.26 -15.21 9.90 84.03 0.83 -14.38 16 6 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 7 C -0.02 -1.31 5.34 84.86 0.45 -0.86 16 8 N -0.95 -61.75 13.97 21.65 0.30 -61.45 16 9 Si 0.96 45.10 24.92 68.60 1.71 46.81 16 10 H -0.27 -12.06 6.70 99.48 0.67 -11.40 16 11 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 12 H -0.24 -10.19 7.11 99.48 0.71 -9.48 16 13 C 0.23 8.74 6.02 85.63 0.52 9.25 16 14 C 0.18 6.98 6.85 138.05 0.95 7.92 16 15 N -0.35 -16.98 12.22 -50.28 -0.61 -17.59 16 16 N -0.36 -15.44 12.21 -50.36 -0.61 -16.06 16 17 C 0.17 5.55 6.93 138.08 0.96 6.51 16 18 N -0.46 -13.53 2.29 -504.75 -1.16 -14.69 16 19 C 0.09 1.62 5.20 86.46 0.45 2.07 16 20 C -0.14 -1.64 5.55 30.57 0.17 -1.47 16 21 C -0.12 -0.95 5.67 30.38 0.17 -0.78 16 22 C -0.12 -1.45 5.68 30.51 0.17 -1.28 16 23 C -0.03 -0.63 5.54 29.89 0.17 -0.47 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 2.00 5.29 -2.39 -0.01 1.99 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.04 1.59 3.20 -2.39 -0.01 1.58 16 30 H 0.08 2.46 7.37 -2.39 -0.02 2.44 16 31 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 32 H 0.08 3.25 7.99 -2.39 -0.02 3.23 16 33 H 0.10 2.91 7.41 -2.39 -0.02 2.89 16 34 H 0.11 1.44 7.82 -2.39 -0.02 1.42 16 35 H 0.10 1.73 6.58 -2.39 -0.02 1.71 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 1.05 5.69 -2.39 -0.01 1.03 16 38 H 0.08 0.49 8.09 -2.38 -0.02 0.47 16 39 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.05 0.81 7.84 -2.39 -0.02 0.79 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.74 6.33 -2.39 -0.02 1.73 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -83.38 326.71 5.23 -78.15 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.95 Total: 9.67 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.11 Total: 4.18 kcal Atomic # 7 Polarization: -135.27 SS G_CDS: -3.54 Total: -138.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.71 Total: 46.81 kcal Total: -83.38 5.23 -78.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365083712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.882 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds