Wall clock time and date at job start Tue Mar 31 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47022 * 245.00107 * 3 2 1 5 5 H 1.48497 * 109.47153 * 4.99834 * 3 2 1 6 6 H 1.48492 * 109.47270 * 124.99943 * 3 2 1 7 7 C 1.37880 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00261 * 170.13379 * 7 2 1 9 9 C 1.50697 * 119.99460 * 350.12798 * 7 2 1 10 10 C 1.52997 * 115.55254 * 324.42023 * 9 7 2 11 11 N 1.46899 * 109.47253 * 305.78356 * 10 9 7 12 12 C 1.46844 * 110.99852 * 308.84957 * 11 10 9 13 13 C 1.53034 * 109.52501 * 174.16003 * 12 11 10 14 14 C 1.53118 * 109.27717 * 59.17857 * 13 12 11 15 15 C 1.53112 * 109.16366 * 302.34734 * 14 13 12 16 16 H 1.08999 * 109.50588 * 297.71405 * 15 14 13 17 17 N 1.46896 * 109.50487 * 177.63404 * 15 14 13 18 18 C 1.48530 * 111.00191 * 63.49972 * 17 15 14 19 19 C 1.54934 * 103.23073 * 159.72376 * 18 17 15 20 20 C 1.54601 * 102.91819 * 322.58126 * 19 18 17 21 21 C 1.47906 * 111.00070 * 180.89493 * 17 15 14 22 22 C 1.46849 * 110.99891 * 184.64466 * 11 10 9 23 23 C 1.53007 * 117.49896 * 110.08937 * 9 7 2 24 24 C 1.52999 * 117.49814 * 178.75016 * 9 7 2 25 25 H 0.96998 * 120.00392 * 5.03720 * 1 2 3 26 26 H 1.09005 * 109.47352 * 185.78515 * 10 9 7 27 27 H 1.09003 * 109.47113 * 65.78424 * 10 9 7 28 28 H 1.08999 * 109.46700 * 294.17611 * 12 11 10 29 29 H 1.09006 * 109.46252 * 54.15811 * 12 11 10 30 30 H 1.09006 * 109.50408 * 299.23876 * 13 12 11 31 31 H 1.08998 * 109.50856 * 179.12401 * 13 12 11 32 32 H 1.09003 * 109.52567 * 182.44284 * 14 13 12 33 33 H 1.08999 * 109.52419 * 62.25744 * 14 13 12 34 34 H 1.09006 * 110.66474 * 278.15645 * 18 17 15 35 35 H 1.08998 * 110.66820 * 41.27898 * 18 17 15 36 36 H 1.09003 * 110.72329 * 204.23017 * 19 18 17 37 37 H 1.08998 * 110.88300 * 81.00845 * 19 18 17 38 38 H 1.08998 * 110.31173 * 263.04244 * 20 19 18 39 39 H 1.09004 * 110.38942 * 140.92145 * 20 19 18 40 40 H 1.08996 * 109.91835 * 333.50698 * 21 17 15 41 41 H 1.08996 * 109.91743 * 94.80328 * 21 17 15 42 42 H 1.08992 * 109.46755 * 65.82463 * 22 11 10 43 43 H 1.08997 * 109.45955 * 305.84989 * 22 11 10 44 44 H 1.08995 * 117.49981 * 215.00164 * 23 9 7 45 45 H 1.08998 * 117.49247 * 0.02703 * 23 9 7 46 46 H 1.09003 * 117.49937 * 359.97438 * 24 9 7 47 47 H 1.09004 * 117.50395 * 144.97677 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0089 1.7507 -1.2689 5 1 1.2887 2.7438 0.1220 6 1 3.1920 1.6451 1.1468 7 6 2.0046 -1.1940 0.0005 8 1 3.0726 -1.2009 -0.1597 9 6 1.2678 -2.4893 0.2249 10 6 0.0994 -2.4218 1.2103 11 7 0.5662 -1.8622 2.4858 12 6 1.7611 -2.5687 2.9645 13 6 2.3027 -1.8695 4.2134 14 6 1.2219 -1.8631 5.2980 15 6 -0.0285 -1.1642 4.7572 16 1 0.2084 -0.1274 4.5187 17 7 -1.0900 -1.2038 5.7720 18 6 -0.6943 -0.4449 6.9860 19 6 -2.0494 -0.1483 7.6760 20 6 -2.9922 0.1276 6.4822 21 6 -2.3228 -0.5551 5.2750 22 6 -0.5026 -1.8840 3.4926 23 6 1.1339 -3.4413 -0.9655 24 6 2.0844 -3.7826 0.1849 25 1 -0.4850 0.8367 -0.0738 26 1 -0.2945 -3.4246 1.3761 27 1 -0.6855 -1.7863 0.8002 28 1 1.5006 -3.5985 3.2091 29 1 2.5235 -2.5622 2.1854 30 1 2.5765 -0.8437 3.9663 31 1 3.1806 -2.4032 4.5776 32 1 1.5881 -1.3279 6.1741 33 1 0.9758 -2.8886 5.5731 34 1 -0.0597 -1.0535 7.6302 35 1 -0.1905 0.4823 6.7129 36 1 -1.9718 0.7298 8.3171 37 1 -2.3921 -1.0116 8.2465 38 1 -3.0801 1.2002 6.3095 39 1 -3.9748 -0.3071 6.6658 40 1 -2.0720 0.1894 4.5195 41 1 -2.9927 -1.3045 4.8537 42 1 -0.7525 -2.9169 3.7347 43 1 -1.3845 -1.3802 3.0969 44 1 0.2135 -4.0194 -1.0466 45 1 1.5792 -3.1307 -1.9107 46 1 3.1545 -3.6965 -0.0041 47 1 1.7895 -4.5852 0.8609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382508284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:26 Heat of formation + Delta-G solvation = 35.117621 kcal Electronic energy + Delta-G solvation = -23484.843335 eV Core-core repulsion = 20474.988086 eV Total energy + Delta-G solvation = -3009.855249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46031 -37.78565 -35.91787 -32.59392 -31.97533 -31.41842 -28.87752 -27.86493 -25.94472 -25.16606 -22.67463 -22.30941 -21.13088 -20.63247 -20.28149 -19.09269 -18.76706 -16.36471 -15.84637 -15.71320 -14.66417 -14.58307 -14.21084 -13.86079 -13.76989 -13.54510 -13.33117 -12.92858 -12.76700 -12.56645 -12.23666 -11.77604 -11.60132 -11.31985 -11.28335 -11.10951 -11.00176 -10.85830 -10.82409 -10.58183 -10.53921 -10.43709 -10.24502 -10.03918 -9.85985 -9.69004 -9.18536 -8.92844 -8.52985 -8.21967 -7.93169 -7.07470 -5.85303 -3.88792 3.37235 3.41897 3.46275 4.05995 4.49805 4.67476 4.71907 4.91191 5.02349 5.24431 5.27280 5.36079 5.39446 5.51894 5.61200 5.68254 5.75041 5.79199 5.81380 5.83435 5.94388 6.04725 6.06935 6.11121 6.14657 6.20187 6.27904 6.29024 6.38427 6.44500 6.48501 6.52334 6.65030 6.73464 6.79727 6.88790 6.93689 7.00571 7.10450 7.23293 7.32630 7.40522 7.69130 8.09495 8.28004 8.33346 8.60468 9.04265 9.71142 11.16025 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.005822 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.824583 B = 4808.000078 C = 5318.332055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.093 3.907 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.481 4.481 8 H 0.053 0.947 9 C 0.066 3.934 10 C 0.106 3.894 11 N -0.498 5.498 12 C 0.058 3.942 13 C -0.115 4.115 14 C -0.106 4.106 15 C 0.082 3.918 16 H 0.050 0.950 17 N -0.515 5.515 18 C 0.036 3.964 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.035 3.965 22 C 0.071 3.929 23 C -0.206 4.206 24 C -0.219 4.219 25 H 0.257 0.743 26 H -0.017 1.017 27 H 0.116 0.884 28 H 0.009 0.991 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 -1.152 12.567 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.111 4.111 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.021 4.021 11 N -0.222 5.222 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.026 4.026 16 H 0.068 0.932 17 N -0.240 5.240 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.093 4.093 22 C -0.058 4.058 23 C -0.245 4.245 24 C -0.257 4.257 25 H 0.067 0.933 26 H 0.001 0.999 27 H 0.133 0.867 28 H 0.027 0.973 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.246 -1.068 12.656 13.109 hybrid contribution 0.418 0.790 -0.172 0.910 sum -2.828 -0.279 12.484 12.804 Atomic orbital electron populations 1.69760 1.05983 1.26192 1.48768 1.24711 0.94488 0.98315 0.93611 0.86748 0.79753 0.83589 0.78275 1.20873 1.21570 1.20177 1.20209 0.93125 0.88971 1.49454 0.92881 1.18957 0.93601 0.88436 0.92520 1.21745 0.98940 0.93888 0.87480 1.61631 1.03536 1.55019 1.01988 1.22124 0.95233 0.92963 0.96693 1.21582 0.96760 1.01903 0.95120 1.21576 0.94693 1.00434 0.97703 1.21814 0.90685 0.99012 0.91104 0.93202 1.64767 1.04022 1.49864 1.05344 1.23184 0.96847 0.96498 0.92657 1.22462 0.95073 1.01289 0.97246 1.22404 0.99160 1.00325 0.95015 1.22836 0.92484 0.97431 0.96567 1.21915 0.95144 0.97649 0.91119 1.22990 0.99142 1.07703 0.94678 1.22988 0.96730 1.02607 1.03326 0.93266 0.99930 0.86668 0.97313 0.88630 0.91312 0.92395 0.92930 0.92022 0.90328 0.93909 0.91487 0.90991 0.91765 0.91295 0.93217 0.90505 0.95975 0.91480 0.92049 0.90492 0.90857 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.65 10.74 55.43 0.60 -23.05 16 2 C 0.09 2.47 5.18 -17.82 -0.09 2.38 16 3 Si 0.89 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.48 -12.80 8.15 -34.44 -0.28 -13.08 16 8 H 0.05 1.43 7.83 -52.49 -0.41 1.02 16 9 C 0.07 1.60 1.06 -155.66 -0.17 1.43 16 10 C 0.11 2.50 4.23 -3.83 -0.02 2.49 16 11 N -0.50 -10.80 4.37 -234.67 -1.03 -11.83 16 12 C 0.06 1.15 4.70 -3.84 -0.02 1.14 16 13 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 14 C -0.11 -1.65 5.17 -26.61 -0.14 -1.79 16 15 C 0.08 1.38 1.78 -67.63 -0.12 1.26 16 16 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 17 N -0.52 -7.54 5.11 -222.41 -1.14 -8.67 16 18 C 0.04 0.45 5.57 -1.90 -0.01 0.43 16 19 C -0.12 -1.27 7.06 -24.87 -0.18 -1.44 16 20 C -0.13 -1.43 6.93 -25.37 -0.18 -1.61 16 21 C 0.03 0.48 5.41 -2.75 -0.01 0.46 16 22 C 0.07 1.35 4.61 -3.83 -0.02 1.33 16 23 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 24 C -0.22 -4.76 8.16 -26.69 -0.22 -4.98 16 25 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 26 H -0.02 -0.40 8.08 -51.93 -0.42 -0.82 16 27 H 0.12 3.01 6.00 -51.93 -0.31 2.69 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 2.09 5.24 -51.93 -0.27 1.82 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.73 7.16 -51.93 -0.37 0.36 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 35 H 0.04 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.76 7.49 -51.93 -0.39 0.37 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 1.33 7.03 -51.93 -0.36 0.97 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 46 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -26.75 349.98 -12.01 -38.76 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.82 Total: 2.41 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.87 Total: -19.09 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -1.57 Total: -43.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.75 -12.01 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382508284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.878 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds