Wall clock time and date at job start Tue Mar 31 2020 00:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00280 * 2 1 4 4 H 1.48500 * 109.47164 * 264.49156 * 3 2 1 5 5 H 1.48506 * 109.47158 * 24.48734 * 3 2 1 6 6 H 1.48497 * 109.47416 * 144.49183 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99694 * 342.15732 * 7 2 1 9 9 C 1.50689 * 120.00038 * 162.15636 * 7 2 1 10 10 C 1.53006 * 115.55274 * 294.72269 * 9 7 2 11 11 N 1.46902 * 109.47157 * 270.48622 * 10 9 7 12 12 C 1.46854 * 110.99745 * 71.76140 * 11 10 9 13 13 C 1.53032 * 109.52209 * 185.80300 * 12 11 10 14 14 C 1.53124 * 109.30915 * 300.88062 * 13 12 11 15 15 C 1.53121 * 109.15789 * 57.64188 * 14 13 12 16 16 H 1.08991 * 109.50544 * 62.28031 * 15 14 13 17 17 N 1.46902 * 109.49926 * 182.40310 * 15 14 13 18 18 C 1.48533 * 110.99680 * 177.60000 * 17 15 14 19 19 C 1.54935 * 103.22572 * 159.72199 * 18 17 15 20 20 C 1.54597 * 102.92157 * 322.58367 * 19 18 17 21 21 C 1.47900 * 111.00180 * 294.99453 * 17 15 14 22 22 C 1.46838 * 111.00317 * 196.01575 * 11 10 9 23 23 C 1.53000 * 117.52077 * 80.42215 * 9 7 2 24 24 C 1.53004 * 117.50141 * 149.05612 * 9 7 2 25 25 H 0.97002 * 119.99389 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47169 * 150.48687 * 10 9 7 27 27 H 1.08997 * 109.46530 * 30.48360 * 10 9 7 28 28 H 1.08997 * 109.42521 * 65.80754 * 12 11 10 29 29 H 1.09003 * 109.49722 * 305.83991 * 12 11 10 30 30 H 1.09000 * 109.50336 * 180.92444 * 13 12 11 31 31 H 1.08997 * 109.50618 * 60.84416 * 13 12 11 32 32 H 1.09006 * 109.51741 * 177.54122 * 14 13 12 33 33 H 1.08991 * 109.52467 * 297.73070 * 14 13 12 34 34 H 1.08997 * 110.67132 * 278.15164 * 18 17 15 35 35 H 1.09002 * 110.67123 * 41.28477 * 18 17 15 36 36 H 1.09004 * 110.72380 * 204.23006 * 19 18 17 37 37 H 1.08997 * 110.87861 * 81.01603 * 19 18 17 38 38 H 1.09000 * 110.30974 * 263.04047 * 20 19 18 39 39 H 1.09001 * 110.39392 * 140.91947 * 20 19 18 40 40 H 1.09002 * 109.91382 * 333.51560 * 21 17 15 41 41 H 1.08996 * 109.91343 * 94.80199 * 21 17 15 42 42 H 1.09007 * 109.46076 * 54.13987 * 22 11 10 43 43 H 1.09001 * 109.45502 * 294.17784 * 22 11 10 44 44 H 1.08995 * 117.50468 * 214.97045 * 23 9 7 45 45 H 1.09002 * 117.49466 * 359.97438 * 23 9 7 46 46 H 1.09005 * 117.49642 * 359.97029 * 24 9 7 47 47 H 1.09002 * 117.50379 * 144.99925 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6132 1.9791 -1.3936 5 1 1.3933 2.6835 0.5803 6 1 3.4837 1.4765 0.8132 7 6 2.0045 -1.1941 -0.0005 8 1 1.5034 -2.1070 0.2857 9 6 3.4571 -1.2254 -0.4004 10 6 3.7485 -0.8602 -1.8574 11 7 3.7027 -2.0732 -2.6848 12 6 2.3233 -2.5524 -2.8402 13 6 2.3274 -3.8908 -3.5822 14 6 2.9823 -3.7072 -4.9541 15 6 4.4007 -3.1623 -4.7650 16 1 4.9965 -3.8843 -4.2067 17 7 5.0155 -2.9289 -6.0786 18 6 6.3736 -2.3450 -5.9344 19 6 7.0409 -2.6590 -7.2970 20 6 6.4935 -4.0649 -7.6343 21 6 5.1990 -4.2004 -6.8114 22 6 4.3363 -1.8445 -3.9896 23 6 4.4889 -0.8126 0.6512 24 6 4.3475 -2.2835 0.2542 25 1 -0.4849 0.8401 0.0004 26 1 4.7383 -0.4094 -1.9280 27 1 3.0001 -0.1509 -2.2108 28 1 1.7481 -1.8229 -3.4103 29 1 1.8708 -2.6835 -1.8572 30 1 1.3024 -4.2382 -3.7118 31 1 2.8903 -4.6249 -3.0056 32 1 3.0264 -4.6675 -5.4680 33 1 2.3973 -3.0030 -5.5456 34 1 6.3146 -1.2686 -5.7740 35 1 6.9153 -2.8272 -5.1206 36 1 8.1263 -2.6810 -7.1989 37 1 6.7381 -1.9353 -8.0537 38 1 7.2109 -4.8309 -7.3399 39 1 6.2746 -4.1418 -8.6993 40 1 5.2924 -5.0257 -6.1054 41 1 4.3524 -4.3712 -7.4763 42 1 5.3458 -1.4610 -3.8408 43 1 3.7518 -1.1186 -4.5548 44 1 5.3752 -0.2809 0.3051 45 1 4.1171 -0.5178 1.6325 46 1 3.8826 -2.9567 0.9746 47 1 5.1409 -2.7194 -0.3530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382508298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:29 Heat of formation + Delta-G solvation = 30.623409 kcal Electronic energy + Delta-G solvation = -23127.744936 eV Core-core repulsion = 20117.694803 eV Total energy + Delta-G solvation = -3010.050133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65865 -37.92690 -36.20042 -32.90213 -32.12306 -31.58358 -29.07325 -28.11527 -26.46422 -25.27351 -22.84657 -22.46962 -21.35911 -20.76911 -20.50314 -19.31226 -18.70085 -16.58212 -16.07269 -15.88547 -14.99174 -14.72128 -14.41584 -14.11007 -13.86387 -13.75794 -13.46973 -13.09578 -12.75778 -12.68607 -12.51226 -12.32279 -11.90930 -11.62518 -11.45381 -11.40488 -11.16464 -10.99333 -10.94752 -10.73550 -10.67682 -10.41465 -10.27074 -10.16999 -9.93416 -9.84510 -9.37806 -8.95014 -8.59104 -8.40769 -8.22591 -7.55091 -6.12864 -4.05673 3.30237 3.40382 3.49113 3.85207 4.45224 4.48723 4.55603 4.64801 4.83698 5.04552 5.07485 5.17383 5.18973 5.36503 5.41916 5.47588 5.57848 5.60753 5.64863 5.69448 5.74465 5.85719 5.88212 5.90527 5.93040 6.04161 6.08832 6.17143 6.20475 6.26401 6.29514 6.34312 6.39951 6.50547 6.62580 6.69304 6.80536 6.88639 6.91937 7.07355 7.09678 7.24313 7.29496 7.75398 7.90012 7.93613 8.54750 8.94481 9.55472 10.98657 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.004706 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.430684 B = 5949.038937 C = 6221.607174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.485 4.485 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.093 3.907 11 N -0.526 5.526 12 C 0.057 3.943 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.084 3.916 16 H 0.049 0.951 17 N -0.516 5.516 18 C 0.034 3.966 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.038 3.962 22 C 0.061 3.939 23 C -0.201 4.201 24 C -0.163 4.163 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 -6.569 -12.969 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.121 4.121 3 Si 0.689 3.311 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.522 4.522 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.035 4.035 11 N -0.250 5.250 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.024 4.024 16 H 0.067 0.933 17 N -0.240 5.240 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.090 4.090 22 C -0.067 4.067 23 C -0.239 4.239 24 C -0.200 4.200 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.236 -6.464 -12.999 18.358 hybrid contribution 0.463 1.105 0.043 1.199 sum 11.699 -5.359 -12.955 18.260 Atomic orbital electron populations 1.69997 1.06484 1.27138 1.48950 1.24894 0.94287 0.98961 0.93943 0.87094 0.81321 0.83774 0.78922 1.20512 1.22031 1.17598 1.20243 0.90921 0.95215 1.45834 0.90668 1.19316 0.92441 0.99428 0.88278 1.21891 0.98206 0.89607 0.93773 1.61844 1.18738 1.32257 1.12168 1.22205 0.88379 0.93951 1.02533 1.21605 1.00037 0.98698 0.94995 1.21607 0.95012 1.00167 0.97869 1.21794 0.95761 0.97021 0.87840 0.93307 1.64768 1.19182 1.22293 1.17794 1.23217 0.89013 1.00624 0.96536 1.22472 0.99474 0.96845 0.97347 1.22401 0.96760 0.97381 1.00386 1.22816 0.97693 0.91500 0.96995 1.22042 0.99115 0.95222 0.90352 1.23101 1.01368 0.97922 1.01547 1.22552 1.02962 0.91113 1.03418 0.92682 0.93586 0.94521 0.95690 0.87265 0.91742 0.91665 0.92712 0.91686 0.90072 0.93637 0.91319 0.90876 0.91741 0.91217 0.93798 0.90557 0.91824 0.94846 0.91788 0.89904 0.90484 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.29 5.29 -17.82 -0.09 2.20 16 3 Si 0.86 21.20 25.76 -169.99 -4.38 16.83 16 4 H -0.28 -6.80 7.00 56.52 0.40 -6.40 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.25 -5.92 5.81 56.52 0.33 -5.60 16 7 C -0.49 -13.04 7.42 -34.45 -0.26 -13.30 16 8 H 0.08 2.21 7.98 -52.48 -0.42 1.80 16 9 C 0.01 0.15 0.67 -155.66 -0.10 0.05 16 10 C 0.09 1.99 4.38 -3.82 -0.02 1.97 16 11 N -0.53 -10.03 4.42 -234.67 -1.04 -11.06 16 12 C 0.06 1.11 5.21 -3.83 -0.02 1.09 16 13 C -0.11 -1.81 6.09 -26.65 -0.16 -1.98 16 14 C -0.11 -1.54 5.22 -26.60 -0.14 -1.68 16 15 C 0.08 1.21 1.81 -67.63 -0.12 1.09 16 16 H 0.05 0.74 7.96 -51.93 -0.41 0.33 16 17 N -0.52 -6.57 5.11 -222.41 -1.14 -7.71 16 18 C 0.03 0.38 5.32 -1.90 -0.01 0.37 16 19 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 20 C -0.13 -1.15 6.93 -25.38 -0.18 -1.33 16 21 C 0.04 0.41 5.59 -2.76 -0.02 0.39 16 22 C 0.06 1.01 4.51 -3.84 -0.02 1.00 16 23 C -0.20 -4.31 7.73 -26.73 -0.21 -4.52 16 24 C -0.16 -3.39 9.75 -26.72 -0.26 -3.65 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.05 0.92 7.61 -51.93 -0.39 0.52 16 27 H 0.04 0.87 6.48 -51.93 -0.34 0.53 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.11 2.49 5.80 -51.93 -0.30 2.19 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.69 7.44 -51.93 -0.39 0.30 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 35 H 0.05 0.53 8.02 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.48 7.66 -51.93 -0.40 0.08 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.00 6.75 -51.92 -0.35 0.65 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 45 H 0.08 1.84 7.95 -51.93 -0.41 1.43 16 46 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -27.99 347.51 -11.25 -39.24 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.93 Total: 2.60 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.78 Total: -19.59 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -1.40 Total: -44.32 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.38 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.99 -11.25 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382508298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.862 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds