Wall clock time and date at job start Tue Mar 31 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00280 * 2 1 4 4 H 1.48500 * 109.47164 * 264.49156 * 3 2 1 5 5 H 1.48506 * 109.47158 * 24.48734 * 3 2 1 6 6 H 1.48497 * 109.47416 * 144.49183 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99694 * 342.15732 * 7 2 1 9 9 C 1.50689 * 120.00038 * 162.15636 * 7 2 1 10 10 C 1.53006 * 115.55274 * 294.72269 * 9 7 2 11 11 N 1.46902 * 109.47157 * 270.48622 * 10 9 7 12 12 C 1.46854 * 110.99745 * 71.76140 * 11 10 9 13 13 C 1.53032 * 109.52209 * 185.80300 * 12 11 10 14 14 C 1.53124 * 109.30915 * 300.88062 * 13 12 11 15 15 C 1.53121 * 109.15789 * 57.64188 * 14 13 12 16 16 H 1.08991 * 109.50544 * 62.28031 * 15 14 13 17 17 N 1.46902 * 109.49926 * 182.40310 * 15 14 13 18 18 C 1.48533 * 110.99680 * 177.60000 * 17 15 14 19 19 C 1.54935 * 103.22572 * 159.72199 * 18 17 15 20 20 C 1.54597 * 102.92157 * 322.58367 * 19 18 17 21 21 C 1.47900 * 111.00180 * 294.99453 * 17 15 14 22 22 C 1.46838 * 111.00317 * 196.01575 * 11 10 9 23 23 C 1.53000 * 117.52077 * 80.42215 * 9 7 2 24 24 C 1.53004 * 117.50141 * 149.05612 * 9 7 2 25 25 H 0.97002 * 119.99389 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47169 * 150.48687 * 10 9 7 27 27 H 1.08997 * 109.46530 * 30.48360 * 10 9 7 28 28 H 1.08997 * 109.42521 * 65.80754 * 12 11 10 29 29 H 1.09003 * 109.49722 * 305.83991 * 12 11 10 30 30 H 1.09000 * 109.50336 * 180.92444 * 13 12 11 31 31 H 1.08997 * 109.50618 * 60.84416 * 13 12 11 32 32 H 1.09006 * 109.51741 * 177.54122 * 14 13 12 33 33 H 1.08991 * 109.52467 * 297.73070 * 14 13 12 34 34 H 1.08997 * 110.67132 * 278.15164 * 18 17 15 35 35 H 1.09002 * 110.67123 * 41.28477 * 18 17 15 36 36 H 1.09004 * 110.72380 * 204.23006 * 19 18 17 37 37 H 1.08997 * 110.87861 * 81.01603 * 19 18 17 38 38 H 1.09000 * 110.30974 * 263.04047 * 20 19 18 39 39 H 1.09001 * 110.39392 * 140.91947 * 20 19 18 40 40 H 1.09002 * 109.91382 * 333.51560 * 21 17 15 41 41 H 1.08996 * 109.91343 * 94.80199 * 21 17 15 42 42 H 1.09007 * 109.46076 * 54.13987 * 22 11 10 43 43 H 1.09001 * 109.45502 * 294.17784 * 22 11 10 44 44 H 1.08995 * 117.50468 * 214.97045 * 23 9 7 45 45 H 1.09002 * 117.49466 * 359.97438 * 23 9 7 46 46 H 1.09005 * 117.49642 * 359.97029 * 24 9 7 47 47 H 1.09002 * 117.50379 * 144.99925 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6132 1.9791 -1.3936 5 1 1.3933 2.6835 0.5803 6 1 3.4837 1.4765 0.8132 7 6 2.0045 -1.1941 -0.0005 8 1 1.5034 -2.1070 0.2857 9 6 3.4571 -1.2254 -0.4004 10 6 3.7485 -0.8602 -1.8574 11 7 3.7027 -2.0732 -2.6848 12 6 2.3233 -2.5524 -2.8402 13 6 2.3274 -3.8908 -3.5822 14 6 2.9823 -3.7072 -4.9541 15 6 4.4007 -3.1623 -4.7650 16 1 4.9965 -3.8843 -4.2067 17 7 5.0155 -2.9289 -6.0786 18 6 6.3736 -2.3450 -5.9344 19 6 7.0409 -2.6590 -7.2970 20 6 6.4935 -4.0649 -7.6343 21 6 5.1990 -4.2004 -6.8114 22 6 4.3363 -1.8445 -3.9896 23 6 4.4889 -0.8126 0.6512 24 6 4.3475 -2.2835 0.2542 25 1 -0.4849 0.8401 0.0004 26 1 4.7383 -0.4094 -1.9280 27 1 3.0001 -0.1509 -2.2108 28 1 1.7481 -1.8229 -3.4103 29 1 1.8708 -2.6835 -1.8572 30 1 1.3024 -4.2382 -3.7118 31 1 2.8903 -4.6249 -3.0056 32 1 3.0264 -4.6675 -5.4680 33 1 2.3973 -3.0030 -5.5456 34 1 6.3146 -1.2686 -5.7740 35 1 6.9153 -2.8272 -5.1206 36 1 8.1263 -2.6810 -7.1989 37 1 6.7381 -1.9353 -8.0537 38 1 7.2109 -4.8309 -7.3399 39 1 6.2746 -4.1418 -8.6993 40 1 5.2924 -5.0257 -6.1054 41 1 4.3524 -4.3712 -7.4763 42 1 5.3458 -1.4610 -3.8408 43 1 3.7518 -1.1186 -4.5548 44 1 5.3752 -0.2809 0.3051 45 1 4.1171 -0.5178 1.6325 46 1 3.8826 -2.9567 0.9746 47 1 5.1409 -2.7194 -0.3530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382508298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:28 Heat of formation + Delta-G solvation = 13.015898 kcal Electronic energy + Delta-G solvation = -23128.508455 eV Core-core repulsion = 20117.694803 eV Total energy + Delta-G solvation = -3010.813652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.82032 -39.30058 -37.70898 -34.30687 -34.12502 -32.78899 -29.95023 -29.28242 -28.19259 -27.11552 -24.06751 -23.80465 -23.05059 -21.85081 -21.37639 -20.60115 -20.57314 -18.37886 -17.25154 -16.91433 -16.82050 -16.09397 -15.82501 -15.57595 -15.17420 -15.05021 -14.73710 -14.66159 -14.44372 -13.94450 -13.81652 -13.58082 -13.27737 -13.09773 -12.91015 -12.65411 -12.46714 -12.26830 -12.20869 -12.08118 -11.99911 -11.90484 -11.70738 -11.45837 -11.39427 -11.27867 -11.10949 -10.87465 -10.49440 -10.16700 -9.36464 -9.16727 -8.29674 -6.24587 1.33132 1.38905 1.51323 2.39351 2.71077 2.98338 3.22078 3.60099 3.67155 3.76376 3.94671 4.01443 4.07651 4.16354 4.19533 4.36148 4.39666 4.43815 4.46913 4.55147 4.60614 4.63750 4.66167 4.70489 4.77783 4.85126 4.90991 4.93393 4.98668 4.99875 5.01682 5.06805 5.09391 5.13728 5.20446 5.22953 5.34348 5.39397 5.43663 5.47249 5.60154 5.76285 5.98155 6.06871 6.22333 6.37280 6.40982 6.78328 7.38377 8.85623 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.004706 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.430684 B = 5949.038937 C = 6221.607174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.030 3.970 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.228 1.228 7 C -0.476 4.476 8 H 0.031 0.969 9 C -0.018 4.018 10 C 0.100 3.900 11 N -0.522 5.522 12 C 0.063 3.937 13 C -0.106 4.106 14 C -0.101 4.101 15 C 0.094 3.906 16 H 0.047 0.953 17 N -0.527 5.527 18 C 0.029 3.971 19 C -0.118 4.118 20 C -0.127 4.127 21 C 0.035 3.965 22 C 0.064 3.936 23 C -0.191 4.191 24 C -0.146 4.146 25 H 0.263 0.737 26 H 0.068 0.932 27 H 0.006 0.994 28 H 0.001 0.999 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.018 0.982 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 -6.995 -14.461 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.169 4.169 3 Si 0.742 3.258 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.151 1.151 7 C -0.514 4.514 8 H 0.049 0.951 9 C -0.019 4.019 10 C -0.028 4.028 11 N -0.246 5.246 12 C -0.065 4.065 13 C -0.145 4.145 14 C -0.139 4.139 15 C -0.015 4.015 16 H 0.065 0.935 17 N -0.252 5.252 18 C -0.098 4.098 19 C -0.156 4.156 20 C -0.165 4.165 21 C -0.093 4.093 22 C -0.064 4.064 23 C -0.229 4.229 24 C -0.183 4.183 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.037 0.963 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.481 -6.906 -14.495 21.621 hybrid contribution -0.573 1.146 0.502 1.376 sum 13.908 -5.760 -13.993 20.552 Atomic orbital electron populations 1.70129 1.08274 1.27827 1.51571 1.25627 0.94833 1.02380 0.94020 0.86204 0.80787 0.79456 0.79355 1.20020 1.22471 1.15072 1.20337 0.93143 0.93388 1.44493 0.95056 1.19217 0.90562 1.02468 0.89700 1.21725 0.98287 0.89883 0.92945 1.61865 1.18084 1.31061 1.13597 1.22024 0.88411 0.95610 1.00432 1.21528 1.01044 0.96230 0.95670 1.21533 0.94692 1.01164 0.96517 1.21615 0.95871 0.95365 0.88613 0.93488 1.64751 1.20230 1.23651 1.16597 1.23280 0.88458 1.00156 0.97953 1.22462 1.00312 0.96997 0.95863 1.22400 0.95893 0.97423 1.00751 1.22899 0.98958 0.90426 0.97035 1.22090 0.98953 0.96428 0.88933 1.23124 1.01110 0.98439 1.00187 1.22545 1.02255 0.90853 1.02644 0.92827 0.91332 0.97568 0.98051 0.91223 0.90928 0.91176 0.90348 0.92644 0.90689 0.93707 0.89669 0.90916 0.90614 0.90074 0.93739 0.90345 0.90569 0.96344 0.89000 0.90816 0.91214 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 2 C 0.03 1.71 5.29 84.65 0.45 2.16 16 3 Si 0.92 44.05 25.76 68.60 1.77 45.82 16 4 H -0.27 -12.91 7.00 99.48 0.70 -12.21 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.23 -9.97 5.81 99.48 0.58 -9.39 16 7 C -0.48 -26.56 7.42 25.60 0.19 -26.37 16 8 H 0.03 1.97 7.98 -2.91 -0.02 1.94 16 9 C -0.02 -0.83 0.67 -52.93 -0.04 -0.86 16 10 C 0.10 4.19 4.38 86.30 0.38 4.57 16 11 N -0.52 -19.65 4.42 -896.37 -3.96 -23.61 16 12 C 0.06 2.55 5.21 86.32 0.45 3.00 16 13 C -0.11 -3.31 6.09 30.65 0.19 -3.13 16 14 C -0.10 -2.72 5.22 30.68 0.16 -2.56 16 15 C 0.09 2.53 1.81 44.97 0.08 2.61 16 16 H 0.05 1.30 7.96 -2.39 -0.02 1.28 16 17 N -0.53 -12.25 5.11 -857.59 -4.38 -16.63 16 18 C 0.03 0.59 5.32 86.65 0.46 1.05 16 19 C -0.12 -1.79 7.06 31.80 0.22 -1.56 16 20 C -0.13 -1.80 6.93 31.47 0.22 -1.58 16 21 C 0.03 0.64 5.59 86.44 0.48 1.12 16 22 C 0.06 2.04 4.51 86.33 0.39 2.43 16 23 C -0.19 -7.69 7.73 30.60 0.24 -7.45 16 24 C -0.15 -5.80 9.75 30.60 0.30 -5.50 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.07 2.56 7.61 -2.39 -0.02 2.54 16 27 H 0.01 0.29 6.48 -2.39 -0.02 0.28 16 28 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.07 3.36 5.80 -2.39 -0.01 3.35 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 1.77 7.44 -2.38 -0.02 1.75 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.58 7.68 -2.39 -0.02 1.56 16 35 H 0.04 0.91 8.02 -2.39 -0.02 0.89 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 0.83 7.66 -2.39 -0.02 0.81 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.23 6.75 -2.38 -0.02 2.21 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 45 H 0.07 3.11 7.95 -2.39 -0.02 3.09 16 46 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 47 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -62.65 347.51 -1.34 -63.99 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.76 Total: 20.41 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.17 Total: -32.07 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -8.04 Total: -98.14 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.77 Total: 45.82 kcal Total: -62.65 -1.34 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382508298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds