Wall clock time and date at job start Tue Mar 31 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47341 * 2 1 4 4 C 1.44658 * 111.00114 * 184.26691 * 3 2 1 5 5 C 1.51092 * 112.82431 * 213.28215 * 4 3 2 6 6 C 1.51200 * 113.75720 * 278.05135 * 5 4 3 7 7 H 1.09006 * 112.93097 * 186.64746 * 6 5 4 8 8 C 1.55346 * 103.35912 * 308.99932 * 6 5 4 9 9 C 1.54120 * 105.03142 * 92.45511 * 8 6 5 10 10 C 1.49658 * 105.11116 * 1.01198 * 9 8 6 11 11 H 1.08994 * 104.12226 * 127.79387 * 10 9 8 12 12 C 1.51020 * 121.96773 * 244.90548 * 10 9 8 13 13 N 1.48524 * 109.88807 * 18.45232 * 10 9 8 14 14 C 1.46901 * 111.00155 * 88.25814 * 13 10 9 15 15 C 1.52991 * 109.46955 * 62.95592 * 14 13 10 16 16 C 1.50704 * 115.55259 * 55.09125 * 15 14 13 17 17 H 1.07999 * 119.99826 * 264.76877 * 16 15 14 18 18 C 1.37873 * 119.99859 * 84.75995 * 16 15 14 19 19 N 1.31516 * 119.99523 * 180.46608 * 18 16 15 20 20 Si 1.86796 * 120.00241 * 0.47337 * 18 16 15 21 21 H 1.48505 * 109.47298 * 91.95159 * 20 18 16 22 22 H 1.48509 * 109.47254 * 211.95028 * 20 18 16 23 23 H 1.48494 * 109.47135 * 331.95012 * 20 18 16 24 24 C 1.53009 * 117.50217 * 269.41633 * 15 14 13 25 25 C 1.53008 * 117.49981 * 200.75920 * 15 14 13 26 26 H 1.09011 * 109.47019 * 186.07224 * 1 2 3 27 27 H 1.09000 * 109.46896 * 306.06860 * 1 2 3 28 28 H 1.08997 * 109.47214 * 66.07522 * 1 2 3 29 29 H 1.08999 * 109.47152 * 239.99913 * 2 1 3 30 30 H 1.08998 * 109.47333 * 120.00286 * 2 1 3 31 31 H 1.09003 * 108.81101 * 92.41984 * 4 3 2 32 32 H 1.08990 * 108.81368 * 334.14587 * 4 3 2 33 33 H 1.09004 * 108.62549 * 156.94768 * 5 4 3 34 34 H 1.08999 * 108.63072 * 39.15724 * 5 4 3 35 35 H 1.09004 * 110.32910 * 333.56858 * 8 6 5 36 36 H 1.08994 * 110.33495 * 211.34403 * 8 6 5 37 37 H 1.08999 * 110.31019 * 119.92092 * 9 8 6 38 38 H 1.09004 * 110.31269 * 242.09924 * 9 8 6 39 39 H 1.08998 * 109.33025 * 316.33129 * 12 10 9 40 40 H 1.08999 * 109.18393 * 196.77291 * 12 10 9 41 41 H 1.08992 * 109.47316 * 182.95968 * 14 13 10 42 42 H 1.09002 * 109.46887 * 302.95567 * 14 13 10 43 43 H 0.97001 * 120.00089 * 180.02562 * 19 18 16 44 44 H 1.08992 * 117.49399 * 0.02562 * 24 15 14 45 45 H 1.08993 * 117.49725 * 145.02363 * 24 15 14 46 46 H 1.09000 * 117.49678 * 214.98257 * 25 15 14 47 47 H 1.08999 * 117.49464 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4622 1.4247 -0.1005 5 6 4.0704 2.5853 0.6519 6 6 4.0390 3.8899 -0.1117 7 1 4.5816 4.6900 0.3919 8 6 4.6539 3.5150 -1.4882 9 6 3.4499 3.1450 -2.3764 10 6 2.2481 3.3435 -1.5069 11 1 1.5963 3.9876 -2.0972 12 6 1.3598 2.1934 -1.0958 13 7 2.5982 4.2072 -0.3505 14 6 2.4196 5.6274 -0.6808 15 6 0.9455 5.8979 -0.9883 16 6 -0.0282 5.4911 0.0876 17 1 -0.5162 4.5289 0.0385 18 6 -0.2959 6.3472 1.1347 19 7 -1.1387 5.9883 2.0784 20 14 0.5382 8.0167 1.2128 21 1 -0.3185 9.0299 0.5457 22 1 0.7451 8.4008 2.6324 23 1 1.8511 7.9469 0.5225 24 6 0.4900 5.7595 -2.4424 25 6 0.6122 7.1468 -1.8071 26 1 -0.3634 -1.0220 0.1087 27 1 -0.3633 0.6050 0.8307 28 1 -0.3633 0.4167 -0.9393 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7393 1.5035 -1.1518 32 1 3.8682 0.4955 0.2990 33 1 5.1072 2.3437 0.8858 34 1 3.5271 2.7166 1.5878 35 1 5.3239 2.6615 -1.3838 36 1 5.1875 4.3669 -1.9093 37 1 3.4028 3.8038 -3.2434 38 1 3.5196 2.1046 -2.6940 39 1 1.1782 1.5517 -1.9579 40 1 0.4104 2.5863 -0.7323 41 1 2.7327 6.2393 0.1650 42 1 3.0243 5.8763 -1.5529 43 1 -1.3274 6.5907 2.8149 44 1 1.2405 5.4752 -3.1799 45 1 -0.5139 5.3745 -2.6208 46 1 -0.3114 7.6738 -1.5678 47 1 1.4432 7.7758 -2.1264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394346024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:49 Heat of formation + Delta-G solvation = 66.471755 kcal Electronic energy + Delta-G solvation = -24313.847602 eV Core-core repulsion = 21305.351970 eV Total energy + Delta-G solvation = -3008.495632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56431 -37.16018 -35.87795 -32.55348 -31.86880 -31.14544 -30.37839 -27.21410 -25.95345 -25.66425 -24.06214 -22.17464 -21.77041 -20.82691 -19.32135 -19.02109 -18.56301 -16.64865 -15.68991 -15.47753 -15.09982 -14.70153 -14.63169 -13.98363 -13.83951 -13.09895 -13.02356 -12.88698 -12.73086 -12.40314 -12.29829 -12.12652 -11.72562 -11.61347 -11.24236 -11.10752 -11.02970 -10.92785 -10.86918 -10.70213 -10.47003 -10.44732 -10.22374 -10.03936 -9.80338 -9.58895 -9.36436 -8.94851 -8.38752 -8.34877 -7.69017 -7.51749 -5.90294 -3.88347 3.38940 3.48314 3.51022 4.18008 4.56296 4.57898 4.88642 4.89949 5.05747 5.12735 5.23714 5.38000 5.40837 5.47513 5.60019 5.64552 5.73650 5.75633 5.78273 5.86083 5.90104 5.96176 5.98475 6.03321 6.07808 6.15490 6.19996 6.24957 6.30139 6.35336 6.36904 6.44484 6.44762 6.54415 6.57985 6.62954 6.74516 6.83892 6.89118 7.10526 7.22308 7.47930 7.67163 7.76972 7.85857 8.00725 8.70666 9.14679 9.73381 11.22441 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.007518 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.906108 B = 3723.473775 C = 4246.646712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 N -0.526 5.526 4 C 0.058 3.942 5 C -0.103 4.103 6 C 0.055 3.945 7 H 0.087 0.913 8 C -0.149 4.149 9 C -0.126 4.126 10 C 0.027 3.973 11 H 0.081 0.919 12 C 0.098 3.902 13 N -0.441 5.441 14 C 0.079 3.921 15 C 0.014 3.986 16 C -0.452 4.452 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.901 5.901 20 Si 0.876 3.124 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.261 1.261 24 C -0.189 4.189 25 C -0.203 4.203 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.005 0.995 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -8.239 -7.500 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.071 4.071 3 N -0.252 5.252 4 C -0.070 4.070 5 C -0.141 4.141 6 C -0.055 4.055 7 H 0.105 0.895 8 C -0.188 4.188 9 C -0.165 4.165 10 C -0.082 4.082 11 H 0.099 0.901 12 C -0.028 4.028 13 N -0.162 5.162 14 C -0.049 4.049 15 C 0.013 3.987 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.124 4.124 19 N -0.540 5.540 20 Si 0.705 3.295 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.185 1.185 24 C -0.226 4.226 25 C -0.241 4.241 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.023 0.977 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.407 -8.055 -6.385 13.934 hybrid contribution 1.198 0.933 -1.436 2.090 sum 10.606 -7.123 -7.821 14.979 Atomic orbital electron populations 1.21833 0.94983 1.01101 1.03042 1.22084 0.96050 0.89708 0.99304 1.62277 1.05334 1.10136 1.47458 1.21353 0.88593 0.97418 0.99640 1.20864 0.98623 0.93782 1.00840 1.22959 0.90616 0.97121 0.94769 0.89458 1.23204 0.97882 1.00632 0.97090 1.21795 0.95484 1.00952 0.98252 1.21526 0.97000 0.97087 0.92617 0.90148 1.22396 0.98176 0.91734 0.90467 1.65826 1.13171 1.03686 1.33506 1.22113 0.96112 0.88996 0.97674 1.19446 0.92815 0.95865 0.90561 1.20047 1.21290 1.03478 1.04099 0.90360 1.24867 0.94558 0.97782 0.95230 1.69891 1.35434 1.36634 1.12025 0.86944 0.81043 0.85208 0.76331 1.21107 1.22401 1.18546 1.22852 1.01295 1.00581 0.97879 1.23001 1.01980 0.91209 1.07879 0.93028 0.91023 0.92789 0.96380 0.91510 0.93763 0.93107 0.93033 0.90452 0.91318 0.92718 0.92035 0.91657 0.95358 0.88659 0.91075 0.97735 0.93003 0.91486 0.89575 0.89410 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.39 37.16 0.35 -1.73 16 2 C 0.06 0.78 5.47 -3.83 -0.02 0.76 16 3 N -0.53 -8.59 4.77 -234.96 -1.12 -9.71 16 4 C 0.06 0.85 4.82 -5.99 -0.03 0.82 16 5 C -0.10 -1.55 4.76 -28.60 -0.14 -1.68 16 6 C 0.05 0.87 3.75 -65.95 -0.25 0.62 16 7 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 8 C -0.15 -2.00 5.84 -24.90 -0.15 -2.14 16 9 C -0.13 -1.78 5.71 -27.80 -0.16 -1.94 16 10 C 0.03 0.46 1.65 -69.46 -0.11 0.34 16 11 H 0.08 1.48 3.51 -51.93 -0.18 1.30 16 12 C 0.10 1.69 4.55 -2.31 -0.01 1.68 16 13 N -0.44 -8.52 4.54 -218.11 -0.99 -9.51 16 14 C 0.08 1.65 4.43 -3.83 -0.02 1.63 16 15 C 0.01 0.32 0.47 -155.65 -0.07 0.25 16 16 C -0.45 -12.28 9.11 -34.44 -0.31 -12.59 16 17 H 0.08 2.36 7.63 -52.49 -0.40 1.96 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 20 Si 0.88 21.95 25.04 -169.99 -4.26 17.69 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.26 -6.16 5.45 56.52 0.31 -5.85 16 24 C -0.19 -3.75 8.10 -26.69 -0.22 -3.97 16 25 C -0.20 -4.29 7.64 -26.69 -0.20 -4.50 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.74 6.95 -51.93 -0.36 0.38 16 29 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 30 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.04 0.62 3.39 -51.93 -0.18 0.44 16 32 H 0.05 0.66 7.64 -51.93 -0.40 0.27 16 33 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.07 0.82 6.99 -51.93 -0.36 0.45 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.84 6.77 -51.93 -0.35 0.49 16 39 H 0.03 0.43 7.52 -51.93 -0.39 0.04 16 40 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 41 H 0.07 1.59 6.28 -51.93 -0.33 1.26 16 42 H 0.00 0.09 7.99 -51.93 -0.41 -0.33 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 45 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 46 H 0.09 1.96 7.38 -51.93 -0.38 1.58 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -29.39 333.89 -10.39 -39.79 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.40 Total: 3.94 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.43 Total: -20.36 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.34 Total: -46.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.26 Total: 17.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.39 -10.39 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394346024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.258 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds