Wall clock time and date at job start Tue Mar 31 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47341 * 2 1 4 4 C 1.44658 * 111.00114 * 184.26691 * 3 2 1 5 5 C 1.51092 * 112.82431 * 213.28215 * 4 3 2 6 6 C 1.51200 * 113.75720 * 278.05135 * 5 4 3 7 7 H 1.09006 * 112.93097 * 186.64746 * 6 5 4 8 8 C 1.55346 * 103.35912 * 308.99932 * 6 5 4 9 9 C 1.54120 * 105.03142 * 92.45511 * 8 6 5 10 10 C 1.49658 * 105.11116 * 1.01198 * 9 8 6 11 11 H 1.08994 * 104.12226 * 127.79387 * 10 9 8 12 12 C 1.51020 * 121.96773 * 244.90548 * 10 9 8 13 13 N 1.48524 * 109.88807 * 18.45232 * 10 9 8 14 14 C 1.46901 * 111.00155 * 88.25814 * 13 10 9 15 15 C 1.52991 * 109.46955 * 62.95592 * 14 13 10 16 16 C 1.50704 * 115.55259 * 55.09125 * 15 14 13 17 17 H 1.07999 * 119.99826 * 264.76877 * 16 15 14 18 18 C 1.37873 * 119.99859 * 84.75995 * 16 15 14 19 19 N 1.31516 * 119.99523 * 180.46608 * 18 16 15 20 20 Si 1.86796 * 120.00241 * 0.47337 * 18 16 15 21 21 H 1.48505 * 109.47298 * 91.95159 * 20 18 16 22 22 H 1.48509 * 109.47254 * 211.95028 * 20 18 16 23 23 H 1.48494 * 109.47135 * 331.95012 * 20 18 16 24 24 C 1.53009 * 117.50217 * 269.41633 * 15 14 13 25 25 C 1.53008 * 117.49981 * 200.75920 * 15 14 13 26 26 H 1.09011 * 109.47019 * 186.07224 * 1 2 3 27 27 H 1.09000 * 109.46896 * 306.06860 * 1 2 3 28 28 H 1.08997 * 109.47214 * 66.07522 * 1 2 3 29 29 H 1.08999 * 109.47152 * 239.99913 * 2 1 3 30 30 H 1.08998 * 109.47333 * 120.00286 * 2 1 3 31 31 H 1.09003 * 108.81101 * 92.41984 * 4 3 2 32 32 H 1.08990 * 108.81368 * 334.14587 * 4 3 2 33 33 H 1.09004 * 108.62549 * 156.94768 * 5 4 3 34 34 H 1.08999 * 108.63072 * 39.15724 * 5 4 3 35 35 H 1.09004 * 110.32910 * 333.56858 * 8 6 5 36 36 H 1.08994 * 110.33495 * 211.34403 * 8 6 5 37 37 H 1.08999 * 110.31019 * 119.92092 * 9 8 6 38 38 H 1.09004 * 110.31269 * 242.09924 * 9 8 6 39 39 H 1.08998 * 109.33025 * 316.33129 * 12 10 9 40 40 H 1.08999 * 109.18393 * 196.77291 * 12 10 9 41 41 H 1.08992 * 109.47316 * 182.95968 * 14 13 10 42 42 H 1.09002 * 109.46887 * 302.95567 * 14 13 10 43 43 H 0.97001 * 120.00089 * 180.02562 * 19 18 16 44 44 H 1.08992 * 117.49399 * 0.02562 * 24 15 14 45 45 H 1.08993 * 117.49725 * 145.02363 * 24 15 14 46 46 H 1.09000 * 117.49678 * 214.98257 * 25 15 14 47 47 H 1.08999 * 117.49464 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4622 1.4247 -0.1005 5 6 4.0704 2.5853 0.6519 6 6 4.0390 3.8899 -0.1117 7 1 4.5816 4.6900 0.3919 8 6 4.6539 3.5150 -1.4882 9 6 3.4499 3.1450 -2.3764 10 6 2.2481 3.3435 -1.5069 11 1 1.5963 3.9876 -2.0972 12 6 1.3598 2.1934 -1.0958 13 7 2.5982 4.2072 -0.3505 14 6 2.4196 5.6274 -0.6808 15 6 0.9455 5.8979 -0.9883 16 6 -0.0282 5.4911 0.0876 17 1 -0.5162 4.5289 0.0385 18 6 -0.2959 6.3472 1.1347 19 7 -1.1387 5.9883 2.0784 20 14 0.5382 8.0167 1.2128 21 1 -0.3185 9.0299 0.5457 22 1 0.7451 8.4008 2.6324 23 1 1.8511 7.9469 0.5225 24 6 0.4900 5.7595 -2.4424 25 6 0.6122 7.1468 -1.8071 26 1 -0.3634 -1.0220 0.1087 27 1 -0.3633 0.6050 0.8307 28 1 -0.3633 0.4167 -0.9393 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7393 1.5035 -1.1518 32 1 3.8682 0.4955 0.2990 33 1 5.1072 2.3437 0.8858 34 1 3.5271 2.7166 1.5878 35 1 5.3239 2.6615 -1.3838 36 1 5.1875 4.3669 -1.9093 37 1 3.4028 3.8038 -3.2434 38 1 3.5196 2.1046 -2.6940 39 1 1.1782 1.5517 -1.9579 40 1 0.4104 2.5863 -0.7323 41 1 2.7327 6.2393 0.1650 42 1 3.0243 5.8763 -1.5529 43 1 -1.3274 6.5907 2.8149 44 1 1.2405 5.4752 -3.1799 45 1 -0.5139 5.3745 -2.6208 46 1 -0.3114 7.6738 -1.5678 47 1 1.4432 7.7758 -2.1264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394346024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:48 Heat of formation + Delta-G solvation = 46.341517 kcal Electronic energy + Delta-G solvation = -24314.720515 eV Core-core repulsion = 21305.351970 eV Total energy + Delta-G solvation = -3009.368545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84086 -38.76220 -37.18002 -34.12906 -33.74944 -32.46006 -31.53687 -28.54698 -27.75033 -27.04035 -25.67121 -23.49965 -23.23892 -21.99962 -20.91290 -20.30788 -20.10554 -18.30005 -17.29753 -16.81845 -16.60956 -16.23554 -15.82179 -15.59718 -15.12491 -14.75645 -14.55689 -14.35906 -14.23034 -13.91269 -13.61486 -13.46522 -13.10400 -12.89842 -12.82746 -12.63022 -12.43869 -12.19249 -12.13468 -12.05961 -12.03064 -11.88285 -11.64533 -11.56348 -11.35535 -11.07763 -10.95440 -10.72837 -10.41466 -10.15016 -9.00578 -8.78035 -8.12966 -6.13484 1.37447 1.40294 1.51433 2.46183 2.92123 3.13011 3.23194 3.46553 3.69770 3.81848 4.00097 4.09442 4.18776 4.29840 4.34091 4.35890 4.42537 4.43257 4.49430 4.56844 4.60882 4.67683 4.70366 4.77899 4.79893 4.83481 4.89539 4.91863 4.97075 5.05090 5.07779 5.11372 5.17311 5.19742 5.29617 5.37426 5.39139 5.44405 5.49746 5.54673 5.62878 5.83083 6.24007 6.39064 6.43635 6.59402 6.63001 6.91560 7.51127 9.03896 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.007518 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.906108 B = 3723.473775 C = 4246.646712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 N -0.554 5.554 4 C 0.058 3.942 5 C -0.099 4.099 6 C 0.046 3.954 7 H 0.086 0.914 8 C -0.136 4.136 9 C -0.121 4.121 10 C 0.034 3.966 11 H 0.062 0.938 12 C 0.106 3.894 13 N -0.478 5.478 14 C 0.091 3.909 15 C -0.011 4.011 16 C -0.434 4.434 17 H 0.028 0.972 18 C 0.014 3.986 19 N -0.957 5.957 20 Si 0.935 3.065 21 H -0.277 1.277 22 H -0.306 1.306 23 H -0.233 1.233 24 C -0.165 4.165 25 C -0.200 4.200 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.029 0.971 43 H 0.257 0.743 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -8.599 -10.098 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 N -0.281 5.281 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.063 4.063 7 H 0.104 0.896 8 C -0.175 4.175 9 C -0.159 4.159 10 C -0.075 4.075 11 H 0.080 0.920 12 C -0.021 4.021 13 N -0.200 5.200 14 C -0.037 4.037 15 C -0.012 4.012 16 C -0.473 4.473 17 H 0.046 0.954 18 C -0.181 4.181 19 N -0.599 5.599 20 Si 0.761 3.239 21 H -0.204 1.204 22 H -0.234 1.234 23 H -0.156 1.156 24 C -0.202 4.202 25 C -0.237 4.237 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.793 -8.424 -9.016 17.774 hybrid contribution 0.061 0.903 -0.607 1.090 sum 12.855 -7.522 -9.623 17.732 Atomic orbital electron populations 1.21792 0.95622 1.01896 1.01216 1.22120 0.95493 0.88673 1.00651 1.62167 1.06811 1.11540 1.47569 1.21407 0.87207 0.97878 1.00489 1.20893 0.99898 0.93994 0.98995 1.23063 0.88985 0.97390 0.96852 0.89588 1.23105 0.97671 1.02010 0.94728 1.21769 0.93866 1.02448 0.97855 1.21560 0.97999 0.96046 0.91918 0.91991 1.22108 0.96398 0.92474 0.91126 1.65753 1.15986 1.03159 1.35107 1.21837 0.94378 0.89912 0.97612 1.19329 0.93136 0.98118 0.90611 1.20145 1.20952 1.00999 1.05159 0.95370 1.25684 0.95515 1.01860 0.95070 1.70068 1.38219 1.38299 1.13330 0.85975 0.81334 0.80544 0.76001 1.20354 1.23400 1.15596 1.22822 1.01500 0.99312 0.96550 1.23040 1.02223 0.91447 1.07028 0.90415 0.94487 0.93416 0.94165 0.90676 0.92273 0.91258 0.89987 0.94370 0.88997 0.91578 0.90968 0.89848 0.93491 0.93793 0.93173 0.95307 0.93374 0.88203 0.90740 0.91051 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.39 71.98 0.68 -3.45 16 2 C 0.06 1.53 5.47 86.30 0.47 2.01 16 3 N -0.55 -17.87 4.77 -897.26 -4.28 -22.16 16 4 C 0.06 1.53 4.82 86.10 0.42 1.94 16 5 C -0.10 -2.81 4.76 29.38 0.14 -2.67 16 6 C 0.05 1.36 3.75 44.64 0.17 1.53 16 7 H 0.09 2.54 8.07 -2.38 -0.02 2.52 16 8 C -0.14 -3.03 5.84 31.78 0.19 -2.85 16 9 C -0.12 -2.89 5.71 29.90 0.17 -2.72 16 10 C 0.03 1.10 1.65 42.89 0.07 1.17 16 11 H 0.06 2.20 3.51 -2.39 -0.01 2.19 16 12 C 0.11 3.64 4.55 84.78 0.39 4.03 16 13 N -0.48 -18.16 4.54 -843.96 -3.83 -22.00 16 14 C 0.09 3.65 4.43 86.30 0.38 4.03 16 15 C -0.01 -0.49 0.47 -52.92 -0.02 -0.51 16 16 C -0.43 -24.77 9.11 25.60 0.23 -24.53 16 17 H 0.03 1.84 7.63 -2.91 -0.02 1.82 16 18 C 0.01 0.82 5.47 84.65 0.46 1.29 16 19 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 20 Si 0.93 46.14 25.04 68.60 1.72 47.86 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.31 -15.47 7.11 99.48 0.71 -14.77 16 23 H -0.23 -10.35 5.45 99.48 0.54 -9.80 16 24 C -0.16 -6.28 8.10 30.62 0.25 -6.03 16 25 C -0.20 -8.02 7.64 30.62 0.23 -7.78 16 26 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.36 6.95 -2.39 -0.02 1.34 16 29 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 31 H 0.06 1.39 3.39 -2.39 -0.01 1.38 16 32 H 0.07 1.57 7.64 -2.39 -0.02 1.55 16 33 H 0.08 1.80 8.13 -2.38 -0.02 1.78 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.66 6.99 -2.38 -0.02 1.64 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.73 6.77 -2.38 -0.02 1.71 16 39 H 0.05 1.40 7.52 -2.39 -0.02 1.38 16 40 H 0.04 1.94 7.54 -2.39 -0.02 1.92 16 41 H 0.05 2.18 6.28 -2.39 -0.02 2.16 16 42 H 0.03 1.01 7.99 -2.39 -0.02 0.99 16 43 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.10 3.18 7.44 -2.39 -0.02 3.16 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.07 3.10 7.38 -2.39 -0.02 3.08 16 47 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -68.76 333.89 -1.12 -69.88 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.76 Total: 22.91 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 4.22 Total: -34.55 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -7.82 Total: -106.09 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.72 Total: 47.86 kcal Total: -68.76 -1.12 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394346024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.220 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds