Wall clock time and date at job start Tue Mar 31 2020 00:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 C 1.47196 * 109.47081 * 239.99977 * 2 1 3 5 5 N 2.60798 * 109.47138 * 239.99844 * 2 1 3 6 6 C 1.52997 * 109.47232 * 119.99873 * 2 1 3 7 7 C 1.53006 * 109.47127 * 300.00122 * 6 2 1 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 2 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47327 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99404 * 294.20455 * 10 9 8 12 12 C 1.53035 * 109.52033 * 174.15823 * 11 10 9 13 13 C 1.53117 * 109.27632 * 59.18530 * 12 11 10 14 14 C 1.50705 * 109.57647 * 182.40795 * 13 12 11 15 15 H 1.07997 * 120.00160 * 119.71293 * 14 13 12 16 16 C 1.37882 * 119.99498 * 299.71409 * 14 13 12 17 17 N 1.31511 * 120.00336 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47098 * 89.99656 * 18 16 14 20 20 H 1.48497 * 109.47059 * 209.99710 * 18 16 14 21 21 H 1.48499 * 109.47225 * 329.99713 * 18 16 14 22 22 C 1.53125 * 109.16116 * 302.34057 * 13 12 11 23 23 C 1.46847 * 111.00382 * 169.99981 * 10 9 8 24 24 H 1.09002 * 109.47045 * 300.00068 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99976 * 1 2 3 26 26 H 1.08998 * 109.47624 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46986 * 300.00118 * 3 2 1 29 29 H 1.09002 * 109.47075 * 59.99390 * 3 2 1 30 30 H 1.09001 * 109.47502 * 180.02562 * 6 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 6 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 7 6 2 33 33 H 1.08993 * 109.46955 * 60.00011 * 7 6 2 34 34 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 35 35 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 36 36 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 37 37 H 1.08992 * 109.47534 * 59.99520 * 9 8 7 38 38 H 1.08998 * 109.46338 * 294.17854 * 11 10 9 39 39 H 1.09001 * 109.46277 * 54.14866 * 11 10 9 40 40 H 1.08996 * 109.50754 * 299.24032 * 12 11 10 41 41 H 1.09001 * 109.50317 * 179.11892 * 12 11 10 42 42 H 1.08998 * 109.52887 * 62.24447 * 13 12 11 43 43 H 0.97002 * 120.00192 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.50048 * 297.71551 * 22 13 12 45 45 H 1.08997 * 109.50203 * 177.59887 * 22 13 12 46 46 H 1.08997 * 109.45965 * 305.85403 * 23 10 9 47 47 H 1.08998 * 109.45940 * 65.82643 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 6 2.0400 -0.7212 1.2492 7 6 1.5300 0.0001 2.4985 8 6 2.0405 -0.7208 3.7477 9 6 1.5300 0.0001 4.9969 10 7 2.0207 -0.6916 6.1964 11 6 1.4415 -2.0370 6.3019 12 6 2.0827 -2.7791 7.4767 13 6 1.8339 -1.9936 8.7672 14 6 2.5129 -2.6877 9.9197 15 1 3.2749 -2.1735 10.4866 16 6 2.1611 -3.9792 10.2505 17 7 1.2329 -4.6051 9.5605 18 14 3.0032 -4.8398 11.6786 19 1 2.2473 -4.5777 12.9297 20 1 3.0431 -6.3018 11.4214 21 1 4.3886 -4.3241 11.8200 22 6 2.4038 -0.5807 8.6133 23 6 1.7534 0.0977 7.4056 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 1.8933 1.0277 2.4985 33 1 0.4400 0.0000 2.4985 34 1 1.6776 -1.7486 3.7480 35 1 3.1305 -0.7204 3.7475 36 1 1.8926 1.0280 4.9969 37 1 0.4401 -0.0006 4.9970 38 1 0.3667 -1.9580 6.4652 39 1 1.6291 -2.5865 5.3794 40 1 3.1555 -2.8707 7.3074 41 1 1.6415 -3.7720 7.5643 42 1 0.7622 -1.9352 8.9573 43 1 0.9852 -5.5136 9.7934 44 1 3.4818 -0.6376 8.4620 45 1 2.1921 -0.0029 9.5130 46 1 2.1674 1.0987 7.2846 47 1 0.6772 0.1665 7.5638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397191151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:51 Heat of formation + Delta-G solvation = -24.129552 kcal Electronic energy + Delta-G solvation = -21536.738772 eV Core-core repulsion = 18524.314373 eV Total energy + Delta-G solvation = -3012.424399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95983 -39.41313 -36.88668 -35.92493 -34.20862 -32.44868 -31.41315 -29.04616 -28.19436 -27.21248 -25.32473 -23.99715 -23.49570 -21.98268 -21.15505 -20.29496 -18.42074 -17.80557 -16.82410 -16.50190 -16.26245 -15.81164 -15.61501 -15.24659 -14.89721 -14.74332 -14.63302 -14.32236 -14.11604 -13.90686 -13.84550 -13.26905 -13.13747 -13.11404 -12.86352 -12.74844 -12.63094 -12.55303 -12.43066 -12.19518 -12.14587 -11.93480 -11.81909 -11.69874 -11.57964 -11.41828 -11.28675 -11.07536 -10.75146 -10.56291 -10.34460 -9.07161 -8.06416 -6.19549 1.41311 1.42375 1.52510 1.73987 1.76353 2.44841 2.87733 3.15617 3.20695 3.83257 3.92710 4.09247 4.13018 4.25079 4.29907 4.39355 4.45239 4.57219 4.63529 4.66304 4.78685 4.85953 4.87112 4.88271 4.93741 4.99080 5.02916 5.03681 5.04822 5.08381 5.16618 5.17716 5.25639 5.29892 5.36819 5.41114 5.44915 5.60251 5.61624 5.65144 5.67285 6.04301 6.08636 6.38030 6.43606 6.48343 6.55447 6.92556 7.48037 8.98007 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002732 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.430632 B =10244.912443 C =10709.705062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 C -0.144 4.144 4 C 0.239 3.761 5 N -0.500 5.500 6 C -0.106 4.106 7 C -0.108 4.108 8 C -0.114 4.114 9 C 0.055 3.945 10 N -0.546 5.546 11 C 0.070 3.930 12 C -0.096 4.096 13 C 0.043 3.957 14 C -0.533 4.533 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.101 4.101 23 C 0.067 3.933 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.058 0.942 42 H -0.014 1.014 43 H 0.259 0.741 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 14.035 -16.398 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 C -0.202 4.202 4 C -0.078 4.078 5 N -0.175 5.175 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.073 4.073 10 N -0.271 5.271 11 C -0.058 4.058 12 C -0.135 4.135 13 C 0.024 3.976 14 C -0.571 4.571 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.139 4.139 23 C -0.061 4.061 24 H 0.120 0.880 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.004 0.996 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.263 13.005 -17.867 22.134 hybrid contribution -0.608 -0.945 1.298 1.717 sum -1.871 12.059 -16.568 20.578 Atomic orbital electron populations 1.22014 0.90239 1.03389 1.04711 1.18553 0.97669 0.95387 0.84927 1.22011 1.01911 0.91546 1.04749 1.29952 0.91611 0.92126 0.94143 1.81231 1.11129 1.11426 1.13743 1.21630 1.01423 0.99371 0.92087 1.21613 1.01835 1.00153 0.91001 1.21564 1.01197 0.99097 0.93320 1.22207 0.97254 0.98555 0.89239 1.61961 1.59539 1.02565 1.03058 1.22032 0.94877 0.90182 0.98728 1.21417 0.97975 0.99903 0.94175 1.18672 0.93700 0.92035 0.93171 1.21610 1.21285 0.99137 1.15039 0.93163 1.25743 0.95762 0.98232 0.98986 1.70016 1.31909 1.12726 1.41115 0.85651 0.79151 0.77602 0.79820 1.20173 1.20935 1.19384 1.21553 0.99597 0.96555 0.96200 1.22026 0.97356 0.96895 0.89810 0.88044 0.91325 0.92297 0.91931 0.91416 0.87896 0.91230 0.91800 0.89170 0.90070 0.93215 0.91917 0.89347 0.95129 0.97085 0.90705 0.95310 0.92371 0.99558 0.93142 0.93163 0.92989 0.89209 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.08 71.98 0.58 -0.53 16 2 C 0.04 0.39 0.72 -53.99 -0.04 0.35 16 3 C -0.14 -0.97 8.08 71.98 0.58 -0.38 16 4 C 0.24 4.35 13.86 89.44 1.24 5.59 16 5 N -0.50 -12.59 18.54 20.00 0.37 -12.21 16 6 C -0.11 -1.25 4.22 30.60 0.13 -1.12 16 7 C -0.11 -1.16 4.51 30.60 0.14 -1.02 16 8 C -0.11 -2.13 5.14 30.59 0.16 -1.97 16 9 C 0.05 1.23 4.96 86.30 0.43 1.65 16 10 N -0.55 -17.63 4.66 -896.37 -4.17 -21.81 16 11 C 0.07 2.64 5.29 86.32 0.46 3.09 16 12 C -0.10 -4.64 5.12 30.65 0.16 -4.48 16 13 C 0.04 2.18 2.16 -11.46 -0.02 2.15 16 14 C -0.53 -29.93 8.57 25.60 0.22 -29.71 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 16 C 0.01 0.62 5.31 84.66 0.45 1.07 16 17 N -0.92 -53.64 11.37 21.45 0.24 -53.39 16 18 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.10 -4.19 5.32 30.65 0.16 -4.03 16 23 C 0.07 2.22 5.46 86.32 0.47 2.69 16 24 H 0.10 0.43 6.43 -2.39 -0.02 0.42 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.31 6.43 -2.39 -0.02 0.30 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.65 6.43 -2.39 -0.02 0.64 16 33 H 0.08 0.71 6.43 -2.39 -0.02 0.70 16 34 H 0.05 1.08 6.43 -2.39 -0.02 1.07 16 35 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.63 7.99 -2.39 -0.02 1.61 16 37 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.07 2.56 6.21 -2.39 -0.01 2.55 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.06 3.16 6.18 -2.39 -0.01 3.15 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 2.42 8.01 -2.39 -0.02 2.40 16 47 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -67.24 362.78 4.49 -62.75 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.91 Total: 5.10 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 5.11 Total: -26.64 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.56 Total: -87.41 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.24 4.49 -62.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397191151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.623 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds