Wall clock time and date at job start Tue Mar 31 2020 00:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47058 * 2 1 4 4 C 1.53000 * 109.46973 * 240.00038 * 2 1 3 5 5 C 1.50694 * 109.47141 * 175.54773 * 4 2 1 6 6 H 1.07996 * 120.00479 * 5.02159 * 5 4 2 7 7 C 1.37881 * 120.00069 * 185.02528 * 5 4 2 8 8 N 1.31520 * 120.00120 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47329 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47275 * 210.00520 * 9 7 5 12 12 H 1.48498 * 109.47320 * 330.00032 * 9 7 5 13 13 N 1.46905 * 109.47459 * 120.00190 * 2 1 3 14 14 C 1.46842 * 110.99839 * 58.42499 * 13 2 1 15 15 C 1.53041 * 109.52170 * 174.16467 * 14 13 2 16 16 C 1.53117 * 109.28059 * 59.17606 * 15 14 13 17 17 C 1.53121 * 109.16051 * 302.35027 * 16 15 14 18 18 H 1.09000 * 109.50022 * 297.70789 * 17 16 15 19 19 C 1.52998 * 109.50104 * 177.63199 * 17 16 15 20 20 N 1.46508 * 109.47203 * 65.07578 * 19 17 16 21 21 C 1.35314 * 125.86653 * 124.71035 * 20 19 17 22 22 C 1.35346 * 106.17500 * 179.90711 * 21 20 19 23 23 N 1.33772 * 106.49438 * 0.35800 * 22 21 20 24 24 N 1.28635 * 108.88750 * 359.76729 * 23 22 21 25 25 C 1.46848 * 110.99741 * 294.21876 * 13 2 1 26 26 H 1.08996 * 109.47547 * 60.00240 * 1 2 3 27 27 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46999 * 299.99747 * 1 2 3 29 29 H 1.09004 * 109.47149 * 295.54833 * 4 2 1 30 30 H 1.08998 * 109.47405 * 55.54621 * 4 2 1 31 31 H 0.96998 * 119.99597 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46479 * 54.14547 * 14 13 2 33 33 H 1.09006 * 109.45684 * 294.16895 * 14 13 2 34 34 H 1.09002 * 109.49958 * 299.23597 * 15 14 13 35 35 H 1.09003 * 109.53392 * 179.14320 * 15 14 13 36 36 H 1.09000 * 109.52234 * 182.44191 * 16 15 14 37 37 H 1.09002 * 109.57018 * 62.28259 * 16 15 14 38 38 H 1.09001 * 109.47232 * 185.07409 * 19 17 16 39 39 H 1.08998 * 109.47548 * 305.08071 * 19 17 16 40 40 H 1.08002 * 126.91305 * 0.02562 * 21 20 19 41 41 H 1.07998 * 126.75626 * 180.12622 * 22 21 20 42 42 H 1.08999 * 109.46587 * 65.81967 * 25 13 2 43 43 H 1.09002 * 109.45774 * 305.85094 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5429 -0.6265 -1.3057 6 1 4.0866 -0.1756 -0.4888 7 6 4.2239 -1.1153 -2.4004 8 7 5.5356 -1.0331 -2.4494 9 14 3.2836 -1.8958 -3.8132 10 1 2.9317 -0.8526 -4.8098 11 1 4.1296 -2.9317 -4.4586 12 1 2.0419 -2.5237 -3.2944 13 7 2.0198 -0.6925 1.1994 14 6 1.5184 -2.0717 1.2523 15 6 2.1621 -2.8050 2.4313 16 6 1.8233 -2.0688 3.7304 17 6 2.3131 -0.6215 3.6303 18 1 3.3970 -0.6113 3.5161 19 6 1.9262 0.1377 4.9010 20 7 2.6393 -0.4324 6.0468 21 6 3.4304 0.2493 6.9074 22 6 3.8805 -0.6580 7.8052 23 7 3.3562 -1.8363 7.4498 24 7 2.6257 -1.6687 6.4044 25 6 1.6650 0.0484 2.4166 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.7432 -1.7694 -1.2103 30 1 1.6130 -0.2556 -2.1375 31 1 6.0146 -1.3774 -3.2194 32 1 1.7696 -2.5853 0.3243 33 1 0.4359 -2.0599 1.3793 34 1 3.2437 -2.8291 2.2982 35 1 1.7786 -3.8242 2.4799 36 1 2.3155 -2.5628 4.5681 37 1 0.7443 -2.0783 3.8848 38 1 2.1945 1.1886 4.7924 39 1 0.8517 0.0519 5.0627 40 1 3.6555 1.3053 6.8838 41 1 4.5371 -0.4688 8.6415 42 1 0.5818 0.0502 2.5380 43 1 2.0227 1.0748 2.3342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411395396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:41 Heat of formation + Delta-G solvation = 100.557166 kcal Electronic energy + Delta-G solvation = -22347.669443 eV Core-core repulsion = 19237.111522 eV Total energy + Delta-G solvation = -3110.557921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31547 -39.30223 -36.15024 -33.98045 -32.38177 -31.22882 -31.12830 -29.97371 -27.82209 -26.74960 -24.25399 -22.94388 -22.66097 -22.20550 -21.35717 -19.86338 -18.70161 -17.57692 -16.58738 -16.52289 -15.53528 -15.14070 -14.75980 -14.65385 -14.24592 -14.15874 -13.86154 -13.50690 -13.28914 -12.83119 -12.49572 -12.28798 -12.08719 -12.02875 -11.72355 -11.51172 -11.31828 -11.16619 -10.96554 -10.71661 -10.49045 -10.39245 -10.25133 -10.07227 -9.87928 -9.63400 -9.53495 -9.43503 -9.04791 -8.44882 -7.58066 -5.93675 -3.88219 1.53250 2.25749 2.52056 3.32942 3.41605 3.43411 4.16785 4.28135 4.46095 4.51667 4.74554 4.84772 4.89434 5.08363 5.13035 5.18826 5.39056 5.39996 5.46668 5.59034 5.62774 5.67433 5.71804 5.79872 5.82931 5.96377 6.01973 6.04978 6.11819 6.23490 6.31643 6.35448 6.45768 6.54524 6.66558 6.68388 6.77183 7.07251 7.32445 7.75188 7.77595 7.92312 8.45630 8.69385 9.19897 9.69437 11.20254 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.004074 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.060467 B = 6870.428538 C = 7214.207312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.076 0.924 4 C -0.007 4.007 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.507 5.507 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.096 4.096 18 H 0.089 0.911 19 C 0.117 3.883 20 N -0.283 5.283 21 C -0.052 4.052 22 C -0.056 4.056 23 N -0.280 5.280 24 N -0.077 5.077 25 C 0.065 3.935 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.189 0.811 41 H 0.187 0.813 42 H 0.030 0.970 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 4.405 16.046 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.011 4.011 3 H 0.094 0.906 4 C -0.045 4.045 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.230 5.230 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.116 4.116 18 H 0.107 0.893 19 C -0.004 4.004 20 N -0.076 5.076 21 C -0.203 4.203 22 C -0.214 4.214 23 N -0.145 5.145 24 N -0.057 5.057 25 C -0.065 4.065 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.206 0.794 41 H 0.204 0.796 42 H 0.048 0.952 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.176 2.935 15.576 18.315 hybrid contribution -0.843 0.911 -0.688 1.419 sum -10.019 3.846 14.888 18.353 Atomic orbital electron populations 1.22570 0.99728 1.01416 1.00954 1.21689 0.89833 0.98531 0.91035 0.90603 1.19705 0.98038 0.95255 0.91459 1.21057 0.89300 1.38170 1.04630 0.90186 1.25020 0.94663 0.95965 0.98089 1.69910 1.06591 1.47781 1.30405 0.86912 0.80269 0.79543 0.83254 1.20580 1.21591 1.19384 1.61920 1.59262 1.01366 1.00415 1.22134 0.95495 0.90067 0.99658 1.21563 1.02210 0.97914 0.93604 1.21833 1.00539 0.94260 0.99227 1.21484 1.02708 0.96061 0.91334 0.89262 1.22301 0.97139 0.98355 0.82596 1.47550 1.31834 1.06889 1.21375 1.23712 1.00379 1.01464 0.94780 1.23593 1.05407 0.89349 1.03004 1.75136 1.09055 1.23707 1.06639 1.78251 1.18884 0.98606 1.09938 1.21940 0.96861 0.97603 0.90063 0.92500 0.92870 0.93762 0.96552 0.96756 0.93035 0.89479 0.95875 0.90892 0.91996 0.89608 0.92730 0.87488 0.88413 0.79422 0.79605 0.95212 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 8.50 37.16 0.32 -2.53 16 2 C 0.10 1.80 2.30 -67.71 -0.16 1.65 16 3 H 0.08 1.44 8.07 -51.93 -0.42 1.03 16 4 C -0.01 -0.17 3.34 -27.89 -0.09 -0.26 16 5 C -0.49 -13.67 9.38 -34.44 -0.32 -14.00 16 6 H 0.08 2.43 7.97 -52.49 -0.42 2.02 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.87 21.66 27.37 -169.99 -4.65 17.00 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.41 6.69 56.52 0.38 -6.03 16 13 N -0.51 -8.86 4.32 -226.69 -0.98 -9.84 16 14 C 0.05 0.91 4.63 -3.83 -0.02 0.89 16 15 C -0.12 -1.75 6.09 -26.65 -0.16 -1.92 16 16 C -0.12 -1.61 4.92 -26.61 -0.13 -1.74 16 17 C -0.10 -1.18 2.55 -90.54 -0.23 -1.41 16 18 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.12 1.05 5.94 -4.04 -0.02 1.03 16 20 N -0.28 -3.13 3.44 -61.26 -0.21 -3.34 16 21 C -0.05 -0.47 11.57 -17.05 -0.20 -0.67 16 22 C -0.06 -0.58 12.05 -17.74 -0.21 -0.80 16 23 N -0.28 -3.98 12.41 30.23 0.38 -3.61 16 24 N -0.08 -1.08 10.28 60.35 0.62 -0.46 16 25 C 0.06 0.86 4.33 -3.84 -0.02 0.84 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.81 6.51 -51.93 -0.34 0.47 16 28 H 0.04 0.58 6.67 -51.92 -0.35 0.23 16 29 H 0.02 0.38 5.50 -51.93 -0.29 0.10 16 30 H 0.01 0.33 7.29 -51.93 -0.38 -0.05 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 32 H 0.09 1.68 5.97 -51.93 -0.31 1.37 16 33 H 0.02 0.36 6.61 -51.93 -0.34 0.01 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.24 5.64 -51.93 -0.29 0.94 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 0.66 8.07 -51.93 -0.42 0.25 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.03 0.36 6.75 -51.93 -0.35 0.01 16 43 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -33.08 330.14 -7.31 -40.39 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.86 Total: -0.64 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.35 Total: -17.20 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.58 Total: -44.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.08 -7.31 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411395396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.947 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds