Wall clock time and date at job start Tue Mar 31 2020 00:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47058 * 2 1 4 4 C 1.53000 * 109.46973 * 240.00038 * 2 1 3 5 5 C 1.50694 * 109.47141 * 175.54773 * 4 2 1 6 6 H 1.07996 * 120.00479 * 5.02159 * 5 4 2 7 7 C 1.37881 * 120.00069 * 185.02528 * 5 4 2 8 8 N 1.31520 * 120.00120 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47329 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47275 * 210.00520 * 9 7 5 12 12 H 1.48498 * 109.47320 * 330.00032 * 9 7 5 13 13 N 1.46905 * 109.47459 * 120.00190 * 2 1 3 14 14 C 1.46842 * 110.99839 * 58.42499 * 13 2 1 15 15 C 1.53041 * 109.52170 * 174.16467 * 14 13 2 16 16 C 1.53117 * 109.28059 * 59.17606 * 15 14 13 17 17 C 1.53121 * 109.16051 * 302.35027 * 16 15 14 18 18 H 1.09000 * 109.50022 * 297.70789 * 17 16 15 19 19 C 1.52998 * 109.50104 * 177.63199 * 17 16 15 20 20 N 1.46508 * 109.47203 * 65.07578 * 19 17 16 21 21 C 1.35314 * 125.86653 * 124.71035 * 20 19 17 22 22 C 1.35346 * 106.17500 * 179.90711 * 21 20 19 23 23 N 1.33772 * 106.49438 * 0.35800 * 22 21 20 24 24 N 1.28635 * 108.88750 * 359.76729 * 23 22 21 25 25 C 1.46848 * 110.99741 * 294.21876 * 13 2 1 26 26 H 1.08996 * 109.47547 * 60.00240 * 1 2 3 27 27 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46999 * 299.99747 * 1 2 3 29 29 H 1.09004 * 109.47149 * 295.54833 * 4 2 1 30 30 H 1.08998 * 109.47405 * 55.54621 * 4 2 1 31 31 H 0.96998 * 119.99597 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46479 * 54.14547 * 14 13 2 33 33 H 1.09006 * 109.45684 * 294.16895 * 14 13 2 34 34 H 1.09002 * 109.49958 * 299.23597 * 15 14 13 35 35 H 1.09003 * 109.53392 * 179.14320 * 15 14 13 36 36 H 1.09000 * 109.52234 * 182.44191 * 16 15 14 37 37 H 1.09002 * 109.57018 * 62.28259 * 16 15 14 38 38 H 1.09001 * 109.47232 * 185.07409 * 19 17 16 39 39 H 1.08998 * 109.47548 * 305.08071 * 19 17 16 40 40 H 1.08002 * 126.91305 * 0.02562 * 21 20 19 41 41 H 1.07998 * 126.75626 * 180.12622 * 22 21 20 42 42 H 1.08999 * 109.46587 * 65.81967 * 25 13 2 43 43 H 1.09002 * 109.45774 * 305.85094 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5429 -0.6265 -1.3057 6 1 4.0866 -0.1756 -0.4888 7 6 4.2239 -1.1153 -2.4004 8 7 5.5356 -1.0331 -2.4494 9 14 3.2836 -1.8958 -3.8132 10 1 2.9317 -0.8526 -4.8098 11 1 4.1296 -2.9317 -4.4586 12 1 2.0419 -2.5237 -3.2944 13 7 2.0198 -0.6925 1.1994 14 6 1.5184 -2.0717 1.2523 15 6 2.1621 -2.8050 2.4313 16 6 1.8233 -2.0688 3.7304 17 6 2.3131 -0.6215 3.6303 18 1 3.3970 -0.6113 3.5161 19 6 1.9262 0.1377 4.9010 20 7 2.6393 -0.4324 6.0468 21 6 3.4304 0.2493 6.9074 22 6 3.8805 -0.6580 7.8052 23 7 3.3562 -1.8363 7.4498 24 7 2.6257 -1.6687 6.4044 25 6 1.6650 0.0484 2.4166 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.7432 -1.7694 -1.2103 30 1 1.6130 -0.2556 -2.1375 31 1 6.0146 -1.3774 -3.2194 32 1 1.7696 -2.5853 0.3243 33 1 0.4359 -2.0599 1.3793 34 1 3.2437 -2.8291 2.2982 35 1 1.7786 -3.8242 2.4799 36 1 2.3155 -2.5628 4.5681 37 1 0.7443 -2.0783 3.8848 38 1 2.1945 1.1886 4.7924 39 1 0.8517 0.0519 5.0627 40 1 3.6555 1.3053 6.8838 41 1 4.5371 -0.4688 8.6415 42 1 0.5818 0.0502 2.5380 43 1 2.0227 1.0748 2.3342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411395396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:40 Heat of formation + Delta-G solvation = 77.607783 kcal Electronic energy + Delta-G solvation = -22348.664603 eV Core-core repulsion = 19237.111522 eV Total energy + Delta-G solvation = -3111.553081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.12731 -40.52515 -37.29422 -35.24854 -34.30993 -32.31887 -31.96340 -31.44108 -29.43358 -27.69679 -25.58843 -24.27288 -23.92278 -23.24896 -22.33972 -21.05666 -20.04352 -18.76322 -18.38746 -17.49040 -16.74550 -16.40761 -15.91824 -15.71367 -15.53395 -15.31540 -15.00228 -14.84005 -14.36958 -14.29448 -14.03769 -13.86775 -13.31523 -13.18158 -12.97700 -12.78451 -12.61846 -12.50474 -12.22346 -12.02626 -11.83984 -11.69974 -11.60162 -11.40064 -11.29963 -11.12492 -11.10380 -10.78675 -10.66224 -10.23033 -8.84823 -8.17784 -6.16340 0.75504 1.35341 1.37930 1.48174 1.54878 1.70256 2.41235 3.04442 3.21092 3.53868 3.69776 3.75149 3.94568 4.07729 4.16539 4.25885 4.30254 4.35305 4.40640 4.43276 4.46816 4.52002 4.57903 4.68790 4.80283 4.85459 4.87199 4.93765 5.01024 5.10095 5.16756 5.18729 5.19838 5.23714 5.33836 5.45139 5.49919 5.61479 5.76221 5.80183 6.38765 6.47328 6.58684 6.93428 7.44773 7.61430 8.99676 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.004074 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.060467 B = 6870.428538 C = 7214.207312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 H 0.067 0.933 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.037 0.963 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.251 1.251 13 N -0.540 5.540 14 C 0.061 3.939 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.089 4.089 18 H 0.056 0.944 19 C 0.120 3.880 20 N -0.286 5.286 21 C -0.038 4.038 22 C -0.070 4.070 23 N -0.322 5.322 24 N -0.117 5.117 25 C 0.068 3.932 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.233 0.767 41 H 0.214 0.786 42 H 0.056 0.944 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 5.919 16.835 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.008 4.008 3 H 0.085 0.915 4 C -0.044 4.044 5 C -0.527 4.527 6 H 0.056 0.944 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.219 1.219 12 H -0.175 1.175 13 N -0.264 5.264 14 C -0.067 4.067 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.108 4.108 18 H 0.074 0.926 19 C 0.000 4.000 20 N -0.080 5.080 21 C -0.189 4.189 22 C -0.228 4.228 23 N -0.187 5.187 24 N -0.096 5.096 25 C -0.061 4.061 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.250 0.750 41 H 0.231 0.769 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.974 4.443 16.375 20.767 hybrid contribution 0.127 0.502 -0.848 0.993 sum -11.847 4.945 15.527 20.147 Atomic orbital electron populations 1.22422 0.96365 1.01994 1.02719 1.21473 0.92401 0.97223 0.89675 0.91497 1.19667 0.94555 0.95905 0.94270 1.21320 0.91996 1.36472 1.02899 0.94441 1.25942 0.95483 0.96975 1.01400 1.70085 1.08650 1.49870 1.31572 0.85791 0.79250 0.78702 0.79621 1.19290 1.21858 1.17461 1.61784 1.60735 1.02025 1.01812 1.22009 0.96700 0.89682 0.98328 1.21526 0.99899 0.98983 0.94674 1.21744 1.01401 0.94695 0.97168 1.21322 1.00546 0.95889 0.93079 0.92593 1.22440 0.98184 0.99294 0.80115 1.47759 1.31911 1.06473 1.21809 1.24439 0.98278 1.03068 0.93136 1.24215 1.05704 0.88597 1.04243 1.75068 1.10243 1.25931 1.07465 1.78193 1.20409 1.00264 1.10749 1.21991 0.98403 0.97435 0.88240 0.91834 0.92799 0.90958 0.96652 0.96235 0.93143 0.92872 0.93658 0.94380 0.90924 0.90798 0.90963 0.83900 0.86369 0.75049 0.76905 0.92641 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.72 8.50 71.98 0.61 -4.11 16 2 C 0.10 3.60 2.30 44.91 0.10 3.70 16 3 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 4 C -0.01 -0.30 3.34 29.85 0.10 -0.20 16 5 C -0.49 -27.90 9.38 25.60 0.24 -27.65 16 6 H 0.04 2.40 7.97 -2.91 -0.02 2.37 16 7 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 8 N -0.96 -61.56 13.96 21.45 0.30 -61.26 16 9 Si 0.94 45.07 27.37 68.60 1.88 46.95 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.25 -11.16 6.69 99.48 0.67 -10.49 16 13 N -0.54 -18.55 4.32 -871.11 -3.76 -22.31 16 14 C 0.06 2.00 4.63 86.33 0.40 2.40 16 15 C -0.11 -3.50 6.09 30.65 0.19 -3.32 16 16 C -0.11 -2.89 4.92 30.67 0.15 -2.74 16 17 C -0.09 -2.04 2.55 -10.74 -0.03 -2.07 16 18 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 19 C 0.12 1.75 5.94 86.38 0.51 2.26 16 20 N -0.29 -5.72 3.44 -347.72 -1.20 -6.92 16 21 C -0.04 -0.57 11.57 83.49 0.97 0.39 16 22 C -0.07 -1.34 12.05 83.73 1.01 -0.33 16 23 N -0.32 -9.12 12.41 -58.26 -0.72 -9.84 16 24 N -0.12 -3.23 10.28 37.02 0.38 -2.85 16 25 C 0.07 1.63 4.33 86.32 0.37 2.00 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.44 6.51 -2.39 -0.02 1.43 16 28 H 0.07 1.55 6.67 -2.38 -0.02 1.53 16 29 H 0.02 0.71 5.50 -2.38 -0.01 0.69 16 30 H 0.02 0.86 7.29 -2.39 -0.02 0.84 16 31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.05 2.08 5.97 -2.39 -0.01 2.07 16 33 H 0.05 1.28 6.61 -2.38 -0.02 1.27 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.14 5.64 -2.39 -0.01 2.13 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.14 1.08 8.07 -2.39 -0.02 1.06 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.23 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.06 1.08 6.75 -2.39 -0.02 1.07 16 43 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 Total: -1.00 -77.00 330.14 2.91 -74.09 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.94 Total: 11.53 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 5.09 Total: -29.39 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.00 Total: -103.18 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -77.00 2.91 -74.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411395396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.703 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds