Wall clock time and date at job start Tue Mar 31 2020 00:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47665 * 2 1 4 4 C 1.53005 * 109.46693 * 119.99922 * 2 1 3 5 5 C 1.50702 * 109.46921 * 183.99777 * 4 2 1 6 6 H 1.08003 * 120.00101 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99940 * 179.97438 * 5 4 2 8 8 N 1.31505 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 179.72575 * 7 5 4 10 10 H 1.48500 * 109.47053 * 270.27365 * 9 7 5 11 11 H 1.48498 * 109.46990 * 30.27928 * 9 7 5 12 12 H 1.48502 * 109.46840 * 150.27751 * 9 7 5 13 13 N 1.46904 * 109.46960 * 239.99353 * 2 1 3 14 14 C 1.46846 * 111.00280 * 306.40525 * 13 2 1 15 15 C 1.53039 * 109.52130 * 185.83375 * 14 13 2 16 16 C 1.53114 * 109.28027 * 300.82278 * 15 14 13 17 17 C 1.53117 * 109.16044 * 57.65817 * 16 15 14 18 18 H 1.08997 * 109.50703 * 62.28216 * 17 16 15 19 19 C 1.53002 * 109.50176 * 182.40178 * 17 16 15 20 20 N 1.46497 * 109.47000 * 294.80101 * 19 17 16 21 21 C 1.35317 * 125.86646 * 124.72108 * 20 19 17 22 22 C 1.35357 * 106.17143 * 179.90245 * 21 20 19 23 23 N 1.33768 * 106.49751 * 0.34907 * 22 21 20 24 24 N 1.28628 * 108.88486 * 359.77237 * 23 22 21 25 25 C 1.46855 * 110.99582 * 70.61643 * 13 2 1 26 26 H 1.09004 * 109.46519 * 59.99929 * 1 2 3 27 27 H 1.09000 * 109.47665 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46886 * 300.00367 * 1 2 3 29 29 H 1.08996 * 109.46775 * 64.00318 * 4 2 1 30 30 H 1.08996 * 109.46984 * 303.99924 * 4 2 1 31 31 H 0.97000 * 120.00244 * 359.71922 * 8 7 5 32 32 H 1.08995 * 109.46122 * 305.85630 * 14 13 2 33 33 H 1.09004 * 109.45933 * 65.82131 * 14 13 2 34 34 H 1.08998 * 109.49794 * 180.87984 * 15 14 13 35 35 H 1.08999 * 109.52859 * 60.78899 * 15 14 13 36 36 H 1.08996 * 109.52364 * 297.74671 * 16 15 14 37 37 H 1.09007 * 109.51841 * 177.55960 * 16 15 14 38 38 H 1.09007 * 109.46970 * 54.80018 * 19 17 16 39 39 H 1.09002 * 109.47015 * 174.79622 * 19 17 16 40 40 H 1.07995 * 126.91351 * 359.97438 * 21 20 19 41 41 H 1.07998 * 126.74651 * 180.12278 * 22 21 20 42 42 H 1.08994 * 109.46062 * 294.17702 * 25 13 2 43 43 H 1.09003 * 109.46192 * 54.14486 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5437 -0.6361 1.2999 6 1 4.0818 -0.1189 0.5193 7 6 4.2324 -1.2176 2.3433 8 7 3.5771 -1.8469 3.2940 9 14 6.0969 -1.1186 2.4019 10 1 6.6772 -2.2845 1.6885 11 1 6.5467 0.1363 1.7476 12 1 6.5488 -1.1288 3.8165 13 7 2.0196 -0.6927 -1.1994 14 6 1.4280 -2.0319 -1.3122 15 6 2.0675 -2.7763 -2.4865 16 6 1.8326 -1.9839 -3.7755 17 6 2.4157 -0.5773 -3.6140 18 1 3.4922 -0.6453 -3.4576 19 6 2.1326 0.2408 -4.8755 20 7 2.8527 -0.3446 -6.0090 21 6 2.3008 -0.7433 -7.1784 22 6 3.3192 -1.2165 -7.9340 23 7 4.4285 -1.0930 -7.1967 24 7 4.1183 -0.5732 -6.0618 25 6 1.7660 0.1034 -2.4071 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7363 -1.7675 1.2141 30 1 1.6192 -0.2505 2.1378 31 1 2.6090 -1.8986 3.2634 32 1 1.6057 -2.5862 -0.3906 33 1 0.3548 -1.9418 -1.4804 34 1 1.6170 -3.7645 -2.5795 35 1 3.1385 -2.8795 -2.3126 36 1 0.7625 -1.9146 -3.9706 37 1 2.3236 -2.4885 -4.6077 38 1 1.0622 0.2323 -5.0815 39 1 2.4654 1.2678 -4.7248 40 1 1.2577 -0.6928 -7.4539 41 1 3.2493 -1.6184 -8.9340 42 1 0.6913 0.1835 -2.5702 43 1 2.1893 1.0999 -2.2808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411395397.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:43 Heat of formation + Delta-G solvation = 66.164460 kcal Electronic energy + Delta-G solvation = -22361.795135 eV Core-core repulsion = 19249.745834 eV Total energy + Delta-G solvation = -3112.049301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.13083 -40.59514 -37.38750 -35.48681 -34.41064 -32.36640 -31.87347 -31.21045 -28.83452 -27.70709 -25.56155 -24.73605 -23.85645 -23.47549 -22.51571 -20.98297 -20.23756 -18.79123 -18.36424 -17.42685 -16.97008 -16.09923 -15.76873 -15.72322 -15.55229 -15.33883 -15.19237 -14.98532 -14.62798 -14.31809 -14.20821 -13.37563 -13.15103 -13.09098 -12.98044 -12.94775 -12.60907 -12.55613 -12.24506 -12.14580 -11.94111 -11.84509 -11.69207 -11.62269 -11.34842 -11.14623 -10.87018 -10.59823 -10.46445 -10.26284 -8.91452 -8.56636 -6.21740 0.76308 1.51434 1.54393 1.59727 1.70633 1.77342 2.59379 2.98440 3.27361 3.48285 3.68185 3.75845 3.78093 4.03379 4.11962 4.16789 4.25833 4.31697 4.36711 4.37786 4.39836 4.45230 4.49102 4.59943 4.67257 4.75689 4.80325 4.86424 4.95283 5.00285 5.08454 5.13321 5.14614 5.18062 5.30535 5.34611 5.42965 5.53018 5.75397 6.12390 6.33663 6.39380 6.46552 6.75149 7.54543 7.62037 8.84454 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.004491 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.461791 B = 6232.599066 C = 7048.479301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 H 0.064 0.936 4 C 0.020 3.980 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.045 4.045 8 N -0.950 5.950 9 Si 1.112 2.888 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.284 1.284 13 N -0.537 5.537 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.098 4.098 17 C -0.091 4.091 18 H 0.058 0.942 19 C 0.121 3.879 20 N -0.282 5.282 21 C -0.032 4.032 22 C -0.070 4.070 23 N -0.322 5.322 24 N -0.131 5.131 25 C 0.067 3.933 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.054 0.946 29 H -0.009 1.009 30 H -0.013 1.013 31 H 0.253 0.747 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.150 0.850 39 H 0.110 0.890 40 H 0.238 0.762 41 H 0.215 0.785 42 H 0.060 0.940 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 4.028 -22.054 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.006 4.006 3 H 0.082 0.918 4 C -0.017 4.017 5 C -0.612 4.612 6 H 0.065 0.935 7 C -0.241 4.241 8 N -0.590 5.590 9 Si 0.936 3.064 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.210 1.210 13 N -0.261 5.261 14 C -0.064 4.064 15 C -0.151 4.151 16 C -0.136 4.136 17 C -0.111 4.111 18 H 0.077 0.923 19 C 0.000 4.000 20 N -0.075 5.075 21 C -0.184 4.184 22 C -0.228 4.228 23 N -0.186 5.186 24 N -0.110 5.110 25 C -0.061 4.061 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.005 0.995 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.168 0.832 39 H 0.128 0.872 40 H 0.254 0.746 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.246 3.662 -20.348 22.259 hybrid contribution -2.863 0.147 -0.766 2.968 sum -11.109 3.809 -21.115 24.161 Atomic orbital electron populations 1.22393 0.96591 1.01770 1.02439 1.21449 0.92313 0.96863 0.89930 0.91767 1.19222 0.95800 0.94058 0.92641 1.22299 0.93216 1.36551 1.09107 0.93522 1.27117 1.10580 0.93545 0.92810 1.70892 1.09235 1.43389 1.35454 0.82975 0.70333 0.77048 0.76092 1.20831 1.19740 1.20974 1.61756 1.59853 1.02593 1.01895 1.21951 0.96278 0.90210 0.97929 1.21511 1.00216 0.98821 0.94514 1.21498 1.01573 0.94242 0.96245 1.21352 1.01119 0.95499 0.93099 0.92316 1.22412 0.98519 0.97737 0.81306 1.47720 1.06219 1.39405 1.14198 1.24450 1.03734 1.04010 0.86209 1.24260 0.88317 1.06623 1.03647 1.75081 1.28140 1.15860 0.99560 1.78346 0.97120 1.18700 1.16860 1.22000 0.99092 0.96586 0.88442 0.90525 0.92988 0.92665 0.99134 0.99531 0.93777 0.94042 0.93375 0.90515 0.94300 0.89246 0.93269 0.83184 0.87155 0.74613 0.76808 0.92213 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.44 71.98 0.61 -4.56 16 2 C 0.10 3.97 2.26 44.92 0.10 4.07 16 3 H 0.06 2.54 7.98 -2.39 -0.02 2.52 16 4 C 0.02 1.02 3.68 29.85 0.11 1.13 16 5 C -0.57 -33.20 8.81 25.60 0.23 -32.98 16 6 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 7 C -0.04 -2.68 5.46 84.66 0.46 -2.22 16 8 N -0.95 -60.59 13.65 21.45 0.29 -60.30 16 9 Si 1.11 53.76 29.90 68.60 2.05 55.81 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 N -0.54 -18.89 4.29 -871.08 -3.74 -22.62 16 14 C 0.06 2.12 4.53 86.33 0.39 2.51 16 15 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 16 C -0.10 -2.12 5.14 30.67 0.16 -1.97 16 17 C -0.09 -2.03 2.40 -10.74 -0.03 -2.05 16 18 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 19 C 0.12 1.68 5.85 86.38 0.51 2.19 16 20 N -0.28 -5.42 2.95 -347.72 -1.03 -6.44 16 21 C -0.03 -0.42 11.57 83.49 0.97 0.54 16 22 C -0.07 -1.26 12.05 83.73 1.01 -0.25 16 23 N -0.32 -9.19 12.41 -58.26 -0.72 -9.91 16 24 N -0.13 -3.80 12.82 37.02 0.47 -3.33 16 25 C 0.07 1.63 4.42 86.32 0.38 2.01 16 26 H 0.08 1.76 6.84 -2.38 -0.02 1.74 16 27 H 0.05 1.56 6.46 -2.39 -0.02 1.55 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H -0.01 -0.52 6.15 -2.39 -0.01 -0.54 16 30 H -0.01 -0.74 8.00 -2.39 -0.02 -0.76 16 31 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 32 H 0.04 1.72 6.17 -2.39 -0.01 1.70 16 33 H 0.05 1.34 6.57 -2.38 -0.02 1.33 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.15 7.84 -2.38 -0.02 1.13 16 38 H 0.15 0.74 8.07 -2.38 -0.02 0.72 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.24 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.06 1.11 6.89 -2.39 -0.02 1.09 16 43 H 0.07 1.81 8.01 -2.39 -0.02 1.80 16 Total: -1.00 -79.17 336.82 3.49 -75.68 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.08 Total: 5.77 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 5.08 Total: -34.65 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -4.72 Total: -102.61 kcal Atomic # 14 Polarization: 53.76 SS G_CDS: 2.05 Total: 55.81 kcal Total: -79.17 3.49 -75.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411395397.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.841 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds