Wall clock time and date at job start Tue Mar 31 2020 00:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48503 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47365 * 300.00617 * 3 2 1 6 6 H 1.48506 * 109.46985 * 60.00671 * 3 2 1 7 7 C 1.37882 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 184.87094 * 7 2 1 9 9 C 1.50704 * 119.99562 * 4.86905 * 7 2 1 10 10 C 1.52999 * 115.54979 * 84.85095 * 9 7 2 11 11 N 1.46896 * 109.47332 * 63.28275 * 10 9 7 12 12 C 1.46907 * 110.99876 * 184.37495 * 11 10 9 13 13 H 1.08995 * 110.05408 * 34.96706 * 12 11 10 14 14 C 1.53868 * 110.03310 * 273.54612 * 12 11 10 15 15 C 1.54269 * 106.60006 * 240.71576 * 14 12 11 16 16 C 1.54888 * 104.19611 * 336.38975 * 15 14 12 17 17 C 1.54467 * 110.12038 * 156.22133 * 12 11 10 18 18 H 1.09007 * 110.40589 * 24.14475 * 17 12 11 19 19 C 1.53001 * 110.66080 * 261.43953 * 17 12 11 20 20 H 1.08996 * 109.90623 * 66.37839 * 19 17 12 21 21 C 1.53994 * 109.91827 * 187.47915 * 19 17 12 22 22 C 1.54593 * 105.13903 * 120.57525 * 21 19 17 23 23 C 1.54932 * 102.92473 * 21.95961 * 22 21 19 24 24 N 1.47898 * 109.91454 * 305.06808 * 19 17 12 25 25 C 1.53006 * 117.49678 * 230.51374 * 9 7 2 26 26 C 1.52998 * 117.50430 * 299.17388 * 9 7 2 27 27 H 0.96997 * 120.00174 * 4.99599 * 1 2 3 28 28 H 1.09003 * 109.47357 * 303.28447 * 10 9 7 29 29 H 1.09000 * 109.47347 * 183.28885 * 10 9 7 30 30 H 1.00898 * 111.00351 * 308.32696 * 11 10 9 31 31 H 1.08998 * 110.03028 * 121.43101 * 14 12 11 32 32 H 1.09000 * 110.03369 * 0.02562 * 14 12 11 33 33 H 1.09003 * 110.48688 * 217.71285 * 15 14 12 34 34 H 1.08998 * 110.48822 * 95.07255 * 15 14 12 35 35 H 1.08996 * 110.75535 * 156.25450 * 16 15 14 36 36 H 1.08996 * 110.75742 * 279.44858 * 16 15 14 37 37 H 1.08998 * 110.31083 * 239.49228 * 21 19 17 38 38 H 1.09004 * 110.30816 * 1.56461 * 21 19 17 39 39 H 1.09003 * 110.72524 * 140.31590 * 22 21 19 40 40 H 1.09001 * 110.72918 * 263.59612 * 22 21 19 41 41 H 1.09000 * 110.66672 * 81.01463 * 23 22 21 42 42 H 1.08999 * 110.66989 * 203.98279 * 23 22 21 43 43 H 1.00897 * 111.00479 * 335.82932 * 24 19 17 44 44 H 1.08999 * 117.49672 * 215.00658 * 25 9 7 45 45 H 1.09000 * 117.49743 * 0.02562 * 25 9 7 46 46 H 1.09001 * 117.49304 * 359.97438 * 26 9 7 47 47 H 1.08994 * 117.49944 * 144.97510 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0816 -1.1958 0.0789 9 6 1.2551 -2.4968 -0.1119 10 6 0.9208 -2.9461 -1.5357 11 7 2.1653 -3.1933 -2.2760 12 6 1.8857 -3.5269 -3.6792 13 1 1.0210 -2.9648 -4.0318 14 6 1.6262 -5.0369 -3.8204 15 6 2.7077 -5.5826 -4.7756 16 6 3.1428 -4.3471 -5.6022 17 6 3.1150 -3.2041 -4.5571 18 1 4.0244 -3.2144 -3.9563 19 6 2.9438 -1.8502 -5.2488 20 1 2.9457 -1.0516 -4.5070 21 6 4.0843 -1.6297 -6.2598 22 6 3.3838 -1.4546 -7.6268 23 6 1.9500 -1.0231 -7.2287 24 7 1.6774 -1.8311 -6.0125 25 6 1.5728 -3.5847 0.9160 26 6 0.2447 -2.8269 0.9886 27 1 -0.4850 0.8368 -0.0732 28 1 0.3482 -2.1664 -2.0379 29 1 0.3319 -3.8626 -1.4987 30 1 2.7887 -2.4028 -2.2096 31 1 0.6355 -5.2077 -4.2416 32 1 1.7072 -5.5223 -2.8478 33 1 2.2893 -6.3495 -5.4274 34 1 3.5509 -5.9795 -4.2102 35 1 4.1487 -4.4828 -5.9994 36 1 2.4343 -4.1518 -6.4071 37 1 4.6471 -0.7316 -6.0054 38 1 4.7450 -2.4965 -6.2798 39 1 3.8719 -0.6764 -8.2135 40 1 3.3651 -2.3971 -8.1742 41 1 1.9189 0.0417 -6.9981 42 1 1.2416 -1.2648 -8.0210 43 1 1.3884 -2.7663 -6.2570 44 1 1.5436 -4.6205 0.5778 45 1 2.3236 -3.3580 1.6730 46 1 0.1225 -2.1021 1.7934 47 1 -0.6583 -3.3638 0.6982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423098291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:50 Heat of formation + Delta-G solvation = 12.554220 kcal Electronic energy + Delta-G solvation = -23062.726917 eV Core-core repulsion = 20051.893245 eV Total energy + Delta-G solvation = -3010.833672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84885 -37.22933 -36.24038 -32.86028 -31.82548 -30.53050 -29.96775 -27.31726 -26.27382 -25.34794 -23.45004 -22.27953 -20.96016 -20.87465 -19.48503 -19.17144 -18.71815 -16.56471 -15.86212 -15.65341 -15.21633 -14.57863 -14.33391 -14.18992 -13.83039 -13.78664 -13.54025 -13.30072 -12.51593 -12.38170 -12.07683 -11.90470 -11.62667 -11.43694 -11.28962 -11.08014 -10.97773 -10.88198 -10.84669 -10.73348 -10.45840 -10.39482 -10.33261 -10.26973 -10.04886 -9.99288 -9.16858 -8.82875 -8.49603 -8.28748 -7.97824 -7.35830 -5.97001 -4.03451 3.30476 3.39453 3.42451 4.23126 4.44857 4.63234 4.67469 4.80677 4.83270 4.94965 5.07708 5.22295 5.32598 5.39268 5.47330 5.49886 5.63849 5.66167 5.69502 5.74905 5.81125 5.84750 5.89087 5.93248 6.01969 6.12122 6.14591 6.25673 6.30028 6.37365 6.48738 6.51784 6.61338 6.67406 6.68683 6.89119 6.94229 6.97719 7.04858 7.28645 7.46158 7.61196 7.70342 7.93322 8.15499 8.43946 8.56201 9.00519 9.62556 11.11188 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.006046 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.430045 B = 4629.804770 C = 5914.512055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.491 4.491 8 H 0.059 0.941 9 C 0.044 3.956 10 C 0.109 3.891 11 N -0.674 5.674 12 C 0.085 3.915 13 H 0.057 0.943 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.097 4.097 18 H 0.088 0.912 19 C 0.078 3.922 20 H 0.088 0.912 21 C -0.147 4.147 22 C -0.156 4.156 23 C 0.041 3.959 24 N -0.666 5.666 25 C -0.203 4.203 26 C -0.156 4.156 27 H 0.258 0.742 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.346 0.654 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.336 0.664 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -6.462 -14.476 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.020 4.020 11 N -0.306 5.306 12 C -0.025 4.025 13 H 0.075 0.925 14 C -0.155 4.155 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.116 4.116 18 H 0.106 0.894 19 C -0.032 4.032 20 H 0.106 0.894 21 C -0.187 4.187 22 C -0.195 4.195 23 C -0.089 4.089 24 N -0.295 5.295 25 C -0.240 4.240 26 C -0.194 4.194 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.166 0.834 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.155 0.845 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.747 -6.467 -13.798 15.961 hybrid contribution 0.689 1.286 -0.892 1.710 sum 5.436 -5.181 -14.690 16.498 Atomic orbital electron populations 1.70035 1.05790 1.26415 1.49153 1.24977 0.94733 0.98708 0.94739 0.86689 0.80357 0.84380 0.77526 1.19702 1.21073 1.21181 1.20486 0.92629 0.88942 1.50842 0.92308 1.18816 0.97830 0.92658 0.86354 1.21425 0.89479 0.96341 0.94793 1.60692 1.16122 1.45172 1.08629 1.22204 0.96074 0.94987 0.89284 0.92528 1.22222 0.97272 0.96183 0.99803 1.22285 0.99036 0.96745 0.97580 1.22507 1.00467 0.95314 0.97365 1.22474 0.99981 0.92915 0.96259 0.89396 1.22372 0.87239 0.97830 0.95743 0.89426 1.22878 0.98829 1.02138 0.94813 1.23099 0.97755 1.01274 0.97412 1.23109 0.94420 0.99481 0.91880 1.62880 1.29713 1.18147 1.18797 1.22874 0.99782 0.95895 1.05436 1.22485 0.90817 1.01773 1.04328 0.93248 0.95132 0.94592 0.83384 0.92892 0.90736 0.92464 0.91677 0.92009 0.92127 0.91476 0.91171 0.91336 0.91843 0.90355 0.91169 0.84537 0.91825 0.91065 0.90078 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 12.65 55.43 0.70 -24.35 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 3 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.49 -13.23 8.07 -34.44 -0.28 -13.51 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.04 1.09 1.66 -155.66 -0.26 0.84 16 10 C 0.11 2.46 5.44 -3.83 -0.02 2.44 16 11 N -0.67 -13.15 6.19 -105.43 -0.65 -13.80 16 12 C 0.09 1.37 2.57 -66.49 -0.17 1.20 16 13 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 14 C -0.12 -1.67 6.52 -25.62 -0.17 -1.84 16 15 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 16 C -0.12 -1.31 5.29 -24.74 -0.13 -1.44 16 17 C -0.10 -1.30 2.13 -88.85 -0.19 -1.49 16 18 H 0.09 1.25 7.98 -51.93 -0.41 0.84 16 19 C 0.08 1.05 3.27 -66.64 -0.22 0.83 16 20 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 21 C -0.15 -1.63 6.16 -25.38 -0.16 -1.78 16 22 C -0.16 -1.51 7.06 -24.87 -0.18 -1.69 16 23 C 0.04 0.45 7.55 -1.90 -0.01 0.44 16 24 N -0.67 -8.82 6.37 -103.13 -0.66 -9.48 16 25 C -0.20 -4.63 9.96 -26.69 -0.27 -4.90 16 26 C -0.16 -3.81 9.16 -26.69 -0.24 -4.06 16 27 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 28 H 0.03 0.78 7.96 -51.93 -0.41 0.36 16 29 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.35 7.20 7.60 -39.29 -0.30 6.90 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.62 7.44 -51.93 -0.39 0.24 16 36 H 0.06 0.64 6.16 -51.93 -0.32 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.73 6.58 -51.93 -0.34 0.38 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.34 4.16 6.04 -39.29 -0.24 3.92 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 46 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 47 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -27.60 357.47 -11.42 -39.03 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.62 Total: 11.76 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.56 Total: -24.67 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.61 Total: -47.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.60 -11.42 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423098291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.579 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds