Wall clock time and date at job start Tue Mar 31 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48503 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47365 * 300.00617 * 3 2 1 6 6 H 1.48506 * 109.46985 * 60.00671 * 3 2 1 7 7 C 1.37882 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 184.87094 * 7 2 1 9 9 C 1.50704 * 119.99562 * 4.86905 * 7 2 1 10 10 C 1.52999 * 115.54979 * 84.85095 * 9 7 2 11 11 N 1.46896 * 109.47332 * 63.28275 * 10 9 7 12 12 C 1.46907 * 110.99876 * 184.37495 * 11 10 9 13 13 H 1.08995 * 110.05408 * 34.96706 * 12 11 10 14 14 C 1.53868 * 110.03310 * 273.54612 * 12 11 10 15 15 C 1.54269 * 106.60006 * 240.71576 * 14 12 11 16 16 C 1.54888 * 104.19611 * 336.38975 * 15 14 12 17 17 C 1.54467 * 110.12038 * 156.22133 * 12 11 10 18 18 H 1.09007 * 110.40589 * 24.14475 * 17 12 11 19 19 C 1.53001 * 110.66080 * 261.43953 * 17 12 11 20 20 H 1.08996 * 109.90623 * 66.37839 * 19 17 12 21 21 C 1.53994 * 109.91827 * 187.47915 * 19 17 12 22 22 C 1.54593 * 105.13903 * 120.57525 * 21 19 17 23 23 C 1.54932 * 102.92473 * 21.95961 * 22 21 19 24 24 N 1.47898 * 109.91454 * 305.06808 * 19 17 12 25 25 C 1.53006 * 117.49678 * 230.51374 * 9 7 2 26 26 C 1.52998 * 117.50430 * 299.17388 * 9 7 2 27 27 H 0.96997 * 120.00174 * 4.99599 * 1 2 3 28 28 H 1.09003 * 109.47357 * 303.28447 * 10 9 7 29 29 H 1.09000 * 109.47347 * 183.28885 * 10 9 7 30 30 H 1.00898 * 111.00351 * 308.32696 * 11 10 9 31 31 H 1.08998 * 110.03028 * 121.43101 * 14 12 11 32 32 H 1.09000 * 110.03369 * 0.02562 * 14 12 11 33 33 H 1.09003 * 110.48688 * 217.71285 * 15 14 12 34 34 H 1.08998 * 110.48822 * 95.07255 * 15 14 12 35 35 H 1.08996 * 110.75535 * 156.25450 * 16 15 14 36 36 H 1.08996 * 110.75742 * 279.44858 * 16 15 14 37 37 H 1.08998 * 110.31083 * 239.49228 * 21 19 17 38 38 H 1.09004 * 110.30816 * 1.56461 * 21 19 17 39 39 H 1.09003 * 110.72524 * 140.31590 * 22 21 19 40 40 H 1.09001 * 110.72918 * 263.59612 * 22 21 19 41 41 H 1.09000 * 110.66672 * 81.01463 * 23 22 21 42 42 H 1.08999 * 110.66989 * 203.98279 * 23 22 21 43 43 H 1.00897 * 111.00479 * 335.82932 * 24 19 17 44 44 H 1.08999 * 117.49672 * 215.00658 * 25 9 7 45 45 H 1.09000 * 117.49743 * 0.02562 * 25 9 7 46 46 H 1.09001 * 117.49304 * 359.97438 * 26 9 7 47 47 H 1.08994 * 117.49944 * 144.97510 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0816 -1.1958 0.0789 9 6 1.2551 -2.4968 -0.1119 10 6 0.9208 -2.9461 -1.5357 11 7 2.1653 -3.1933 -2.2760 12 6 1.8857 -3.5269 -3.6792 13 1 1.0210 -2.9648 -4.0318 14 6 1.6262 -5.0369 -3.8204 15 6 2.7077 -5.5826 -4.7756 16 6 3.1428 -4.3471 -5.6022 17 6 3.1150 -3.2041 -4.5571 18 1 4.0244 -3.2144 -3.9563 19 6 2.9438 -1.8502 -5.2488 20 1 2.9457 -1.0516 -4.5070 21 6 4.0843 -1.6297 -6.2598 22 6 3.3838 -1.4546 -7.6268 23 6 1.9500 -1.0231 -7.2287 24 7 1.6774 -1.8311 -6.0125 25 6 1.5728 -3.5847 0.9160 26 6 0.2447 -2.8269 0.9886 27 1 -0.4850 0.8368 -0.0732 28 1 0.3482 -2.1664 -2.0379 29 1 0.3319 -3.8626 -1.4987 30 1 2.7887 -2.4028 -2.2096 31 1 0.6355 -5.2077 -4.2416 32 1 1.7072 -5.5223 -2.8478 33 1 2.2893 -6.3495 -5.4274 34 1 3.5509 -5.9795 -4.2102 35 1 4.1487 -4.4828 -5.9994 36 1 2.4343 -4.1518 -6.4071 37 1 4.6471 -0.7316 -6.0054 38 1 4.7450 -2.4965 -6.2798 39 1 3.8719 -0.6764 -8.2135 40 1 3.3651 -2.3971 -8.1742 41 1 1.9189 0.0417 -6.9981 42 1 1.2416 -1.2648 -8.0210 43 1 1.3884 -2.7663 -6.2570 44 1 1.5436 -4.6205 0.5778 45 1 2.3236 -3.3580 1.6730 46 1 0.1225 -2.1021 1.7934 47 1 -0.6583 -3.3638 0.6982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423098291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:49 Heat of formation + Delta-G solvation = -3.486631 kcal Electronic energy + Delta-G solvation = -23063.422501 eV Core-core repulsion = 20051.893245 eV Total energy + Delta-G solvation = -3011.529255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91672 -38.78108 -37.67016 -34.38406 -33.90454 -31.52831 -30.89865 -28.69136 -27.54055 -27.21163 -25.02715 -23.26906 -22.80758 -21.85176 -21.04938 -20.51367 -20.05915 -17.94810 -17.49352 -16.94175 -16.61142 -16.16497 -15.74946 -15.58029 -15.15794 -14.92573 -14.89436 -14.45261 -14.32945 -13.62124 -13.45430 -13.32141 -12.95560 -12.93444 -12.83876 -12.67809 -12.36277 -12.20937 -12.09619 -11.99104 -11.95420 -11.81674 -11.58165 -11.38678 -11.29255 -11.17235 -11.06472 -10.87644 -10.32702 -9.91597 -9.48756 -9.02932 -8.09171 -6.20378 1.37303 1.40528 1.50580 2.42175 3.19632 3.25885 3.37658 3.64135 3.68896 3.77508 3.87342 4.00791 4.15040 4.21065 4.35694 4.42234 4.54240 4.60235 4.60838 4.65639 4.66806 4.71244 4.78843 4.83076 4.86940 4.98081 5.00093 5.01600 5.03443 5.08007 5.12826 5.16920 5.21917 5.25938 5.31353 5.34777 5.37840 5.49434 5.51613 5.67488 5.72140 5.80983 5.92646 6.43911 6.50758 6.53260 6.74636 6.90205 7.48046 8.98858 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.006046 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.430045 B = 4629.804770 C = 5914.512055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.020 3.980 10 C 0.128 3.872 11 N -0.669 5.669 12 C 0.082 3.918 13 H 0.035 0.965 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.107 4.107 17 C -0.090 4.090 18 H 0.080 0.920 19 C 0.079 3.921 20 H 0.047 0.953 21 C -0.143 4.143 22 C -0.145 4.145 23 C 0.038 3.962 24 N -0.686 5.686 25 C -0.177 4.177 26 C -0.162 4.162 27 H 0.257 0.743 28 H -0.008 1.008 29 H 0.042 0.958 30 H 0.336 0.664 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.341 0.659 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -7.700 -16.474 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.019 3.981 10 C -0.002 4.002 11 N -0.299 5.299 12 C -0.028 4.028 13 H 0.053 0.947 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.109 4.109 18 H 0.098 0.902 19 C -0.031 4.031 20 H 0.065 0.935 21 C -0.182 4.182 22 C -0.184 4.184 23 C -0.092 4.092 24 N -0.317 5.317 25 C -0.215 4.215 26 C -0.201 4.201 27 H 0.066 0.934 28 H 0.010 0.990 29 H 0.060 0.940 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.161 0.839 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.242 -7.721 -15.803 18.663 hybrid contribution 0.185 1.665 -0.235 1.692 sum 6.427 -6.056 -16.039 18.309 Atomic orbital electron populations 1.70144 1.07070 1.27003 1.50366 1.25644 0.95440 1.01731 0.94641 0.85739 0.79534 0.80562 0.77254 1.18825 1.21068 1.21058 1.20699 0.92467 0.90183 1.50261 0.92917 1.18985 0.98384 0.93028 0.87685 1.21099 0.90303 0.95056 0.93702 1.60734 1.14298 1.44071 1.10808 1.22326 0.96772 0.96154 0.87596 0.94730 1.22184 0.98849 0.94397 0.99892 1.22253 0.98023 0.97379 0.97226 1.22465 1.02002 0.93407 0.96607 1.22383 0.97963 0.94090 0.96479 0.90207 1.22212 0.88676 0.96473 0.95736 0.93455 1.22834 0.98003 1.02542 0.94833 1.23043 0.96249 1.02462 0.96659 1.23159 0.96113 0.98431 0.91466 1.62788 1.29983 1.18822 1.20150 1.22840 0.98283 0.96342 1.03986 1.22380 0.91978 1.02010 1.03691 0.93425 0.98971 0.93963 0.84557 0.92352 0.92420 0.90204 0.91600 0.89939 0.91059 0.91937 0.89798 0.90078 0.90212 0.91739 0.89427 0.83907 0.89667 0.91026 0.92507 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.33 12.65 21.45 0.27 -53.06 16 2 C 0.03 1.42 5.43 84.66 0.46 1.88 16 3 Si 0.94 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.50 -27.37 8.07 25.60 0.21 -27.16 16 8 H 0.05 2.90 7.82 -2.91 -0.02 2.87 16 9 C 0.02 1.00 1.66 -52.93 -0.09 0.91 16 10 C 0.13 5.96 5.44 86.30 0.47 6.42 16 11 N -0.67 -26.58 6.19 -487.48 -3.02 -29.60 16 12 C 0.08 2.64 2.57 45.71 0.12 2.75 16 13 H 0.03 1.29 6.52 -2.39 -0.02 1.27 16 14 C -0.11 -3.16 6.52 31.32 0.20 -2.95 16 15 C -0.11 -2.27 6.83 31.67 0.22 -2.05 16 16 C -0.11 -2.04 5.29 31.89 0.17 -1.87 16 17 C -0.09 -2.33 2.13 -9.65 -0.02 -2.35 16 18 H 0.08 2.21 7.98 -2.38 -0.02 2.19 16 19 C 0.08 2.12 3.27 45.06 0.15 2.26 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.14 -2.90 6.16 31.47 0.19 -2.71 16 22 C -0.15 -2.41 7.06 31.80 0.22 -2.19 16 23 C 0.04 0.78 7.55 86.65 0.65 1.43 16 24 N -0.69 -17.89 6.37 -480.20 -3.06 -20.95 16 25 C -0.18 -8.00 9.96 30.62 0.30 -7.70 16 26 C -0.16 -8.06 9.16 30.62 0.28 -7.78 16 27 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 28 H -0.01 -0.43 7.96 -2.39 -0.02 -0.44 16 29 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 30 H 0.34 14.45 7.60 -89.70 -0.68 13.77 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.78 7.92 -2.39 -0.02 1.77 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.31 7.44 -2.39 -0.02 1.29 16 36 H 0.07 1.24 6.16 -2.39 -0.01 1.23 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.48 6.58 -2.38 -0.02 1.46 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.34 8.00 6.04 -89.70 -0.54 7.46 16 44 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 45 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.70 357.47 -0.53 -61.23 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.29 Total: 37.16 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 3.54 Total: -41.10 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -5.81 Total: -103.61 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.70 -0.53 -61.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423098291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -60.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds