Wall clock time and date at job start Tue Mar 31 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00512 * 2 1 4 4 H 1.48499 * 109.47280 * 270.00062 * 3 2 1 5 5 H 1.48502 * 109.46663 * 29.99645 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99826 * 3 2 1 7 7 C 1.37884 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 173.40880 * 7 2 1 9 9 C 1.50699 * 119.99972 * 353.40121 * 7 2 1 10 10 C 1.53001 * 115.54594 * 84.93752 * 9 7 2 11 11 N 1.46893 * 109.47288 * 39.53000 * 10 9 7 12 12 C 1.46907 * 110.99562 * 185.44185 * 11 10 9 13 13 H 1.08996 * 110.01729 * 33.60975 * 12 11 10 14 14 C 1.54262 * 110.07424 * 272.18370 * 12 11 10 15 15 C 1.54886 * 104.20204 * 264.30846 * 14 12 11 16 16 C 1.54966 * 102.77332 * 322.08300 * 15 14 12 17 17 C 1.53886 * 110.02965 * 154.99941 * 12 11 10 18 18 H 1.08999 * 110.03168 * 359.97438 * 17 12 11 19 19 C 1.52993 * 110.03048 * 238.61737 * 17 12 11 20 20 H 1.09000 * 110.72688 * 299.04665 * 19 17 12 21 21 C 1.54936 * 110.66862 * 175.94782 * 19 17 12 22 22 C 1.54586 * 102.92591 * 204.14873 * 21 19 17 23 23 C 1.53996 * 105.14126 * 21.96180 * 22 21 19 24 24 N 1.47907 * 107.05416 * 1.22135 * 23 22 21 25 25 C 1.53003 * 117.51913 * 230.63210 * 9 7 2 26 26 C 1.53002 * 60.00026 * 107.48659 * 25 9 7 27 27 H 0.96999 * 119.99562 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46807 * 279.52305 * 10 9 7 29 29 H 1.09003 * 109.46823 * 159.53293 * 10 9 7 30 30 H 1.00892 * 111.00300 * 61.48544 * 11 10 9 31 31 H 1.09003 * 110.48619 * 22.98761 * 14 12 11 32 32 H 1.08996 * 110.48607 * 145.49170 * 14 12 11 33 33 H 1.09005 * 110.75708 * 80.36584 * 15 14 12 34 34 H 1.08996 * 110.75677 * 203.55839 * 15 14 12 35 35 H 1.08995 * 110.47637 * 279.23266 * 16 15 14 36 36 H 1.09004 * 110.52942 * 156.56418 * 16 15 14 37 37 H 1.09005 * 110.71839 * 85.79236 * 21 19 17 38 38 H 1.08996 * 110.87861 * 322.58806 * 21 19 17 39 39 H 1.09001 * 110.31342 * 263.04330 * 22 21 19 40 40 H 1.09004 * 110.39528 * 140.91923 * 22 21 19 41 41 H 1.09006 * 109.91446 * 241.87216 * 23 22 21 42 42 H 1.09002 * 109.92176 * 120.57693 * 23 22 21 43 43 H 1.00897 * 110.99909 * 95.18540 * 24 23 22 44 44 H 1.08994 * 117.50020 * 214.97712 * 25 9 7 45 45 H 1.08998 * 117.50046 * 359.97438 * 25 9 7 46 46 H 1.08996 * 117.49534 * 252.51538 * 26 25 9 47 47 H 1.08989 * 117.52080 * 107.48097 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0791 -1.1973 -0.1079 9 6 1.2584 -2.4949 0.1489 10 6 0.6897 -3.0817 -1.1447 11 7 1.6542 -2.8884 -2.2356 12 6 1.0899 -3.3234 -3.5203 13 1 0.0176 -3.1291 -3.5418 14 6 1.3592 -4.8271 -3.7349 15 6 2.6456 -4.8636 -4.5966 16 6 2.4498 -3.6623 -5.5558 17 6 1.7829 -2.5833 -4.6780 18 1 2.5375 -1.9011 -4.2865 19 6 0.7497 -1.8066 -5.4965 20 1 0.0120 -2.4830 -5.9281 21 6 1.4431 -0.9748 -6.6046 22 6 0.4234 0.1543 -6.8786 23 6 -0.4401 0.2340 -5.6060 24 7 0.0875 -0.7732 -4.6600 25 6 1.7556 -3.4771 1.2114 26 6 0.4538 -2.7045 1.4333 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2447 -2.5779 -1.3921 29 1 0.5032 -4.1471 -1.0091 30 1 2.5210 -3.3665 -2.0409 31 1 1.5256 -5.3249 -2.7796 32 1 0.5284 -5.2913 -4.2662 33 1 3.5305 -4.7213 -3.9761 34 1 2.7118 -5.7988 -5.1525 35 1 1.7966 -3.9380 -6.3836 36 1 3.4116 -3.3100 -5.9285 37 1 1.6000 -1.5782 -7.4987 38 1 2.3875 -0.5635 -6.2481 39 1 -0.1953 -0.0956 -7.7405 40 1 0.9393 1.0999 -7.0456 41 1 -1.4789 0.0086 -5.8474 42 1 -0.3654 1.2295 -5.1683 43 1 0.7419 -0.3559 -4.0154 44 1 1.6776 -4.5413 0.9889 45 1 2.6229 -3.1828 1.8023 46 1 0.4645 -1.9017 2.1704 47 1 -0.4808 -3.2600 1.3567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423098293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:54 Heat of formation + Delta-G solvation = 14.250169 kcal Electronic energy + Delta-G solvation = -23214.167571 eV Core-core repulsion = 20203.407442 eV Total energy + Delta-G solvation = -3010.760130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.37742 -37.34562 -36.31575 -32.75884 -31.67235 -30.37932 -29.63479 -27.23449 -26.19023 -25.19536 -23.56725 -21.14854 -20.94980 -20.88161 -19.85322 -19.35830 -18.76042 -16.31019 -15.64145 -15.51480 -14.91123 -14.64405 -14.38074 -13.94519 -13.68727 -13.45318 -13.27637 -13.01823 -12.72185 -12.55453 -12.02691 -11.68236 -11.49989 -11.32160 -11.08062 -10.86374 -10.83818 -10.80514 -10.68420 -10.51677 -10.46795 -10.37294 -10.32168 -10.21339 -10.15441 -9.99241 -9.27547 -8.67963 -8.19525 -8.13905 -7.89740 -7.21325 -5.79254 -3.78826 3.40712 3.47496 3.50853 4.43944 4.58476 4.74603 4.85111 4.92855 5.01892 5.10780 5.28575 5.34517 5.45879 5.49197 5.55378 5.63773 5.65652 5.84920 5.85815 5.91096 5.92998 5.93920 6.02626 6.05886 6.08191 6.15456 6.20243 6.28244 6.30511 6.34737 6.42452 6.50287 6.59872 6.66964 6.77927 6.81833 6.85941 7.12184 7.22259 7.23737 7.58260 7.65403 7.86604 8.10788 8.26151 8.46611 8.71501 9.15756 9.82119 11.30879 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.007117 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.828474 B = 3933.024103 C = 5326.579631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.461 4.461 8 H 0.054 0.946 9 C 0.052 3.948 10 C 0.113 3.887 11 N -0.645 5.645 12 C 0.094 3.906 13 H 0.083 0.917 14 C -0.158 4.158 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.080 4.080 18 H 0.085 0.915 19 C 0.087 3.913 20 H 0.079 0.921 21 C -0.152 4.152 22 C -0.152 4.152 23 C 0.042 3.958 24 N -0.660 5.660 25 C -0.221 4.221 26 C -0.159 4.159 27 H 0.254 0.746 28 H 0.072 0.928 29 H -0.012 1.012 30 H 0.326 0.674 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.354 0.646 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -5.410 -12.667 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.126 4.126 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.052 3.948 10 C -0.016 4.016 11 N -0.273 5.273 12 C -0.017 4.017 13 H 0.102 0.898 14 C -0.197 4.197 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.099 4.099 18 H 0.103 0.897 19 C -0.023 4.023 20 H 0.097 0.903 21 C -0.192 4.192 22 C -0.191 4.191 23 C -0.089 4.089 24 N -0.289 5.289 25 C -0.258 4.258 26 C -0.197 4.197 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.006 0.994 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.172 0.828 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.916 -4.943 -12.583 13.550 hybrid contribution 1.206 0.472 -0.253 1.320 sum 2.122 -4.471 -12.836 13.757 Atomic orbital electron populations 1.70008 1.05588 1.25665 1.50187 1.24806 0.94561 0.98115 0.95165 0.86786 0.79853 0.84518 0.77772 1.21001 1.21787 1.20389 1.20085 0.92306 0.88301 1.49221 0.92810 1.18909 0.96827 0.93635 0.85459 1.21458 0.95399 0.93431 0.91327 1.60304 1.05796 1.60895 1.00297 1.22159 0.99496 0.89548 0.90485 0.89841 1.23170 0.97457 0.99417 0.99661 1.22440 0.98179 0.97541 0.97710 1.22378 0.99895 0.95473 0.97649 1.21945 0.96819 0.96752 0.94397 0.89654 1.22737 0.94104 0.93979 0.91506 0.90304 1.23175 0.98812 0.97269 0.99896 1.22811 0.98144 0.98806 0.99375 1.22710 0.98971 0.95861 0.91329 1.62690 1.39116 1.11841 1.15249 1.23078 0.98461 0.95417 1.08886 1.22467 0.91936 1.01103 1.04237 0.93619 0.90998 0.99446 0.85613 0.92079 0.92237 0.91603 0.92424 0.92076 0.92167 0.91590 0.91525 0.91872 0.92011 0.91293 0.92005 0.82810 0.92316 0.90773 0.90246 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 12.94 55.43 0.72 -24.05 16 2 C 0.08 2.06 5.39 -17.82 -0.10 1.96 16 3 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.46 -12.30 8.15 -34.44 -0.28 -12.58 16 8 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.05 1.27 1.74 -155.66 -0.27 1.00 16 10 C 0.11 2.49 5.65 -3.83 -0.02 2.47 16 11 N -0.65 -12.53 5.40 -105.54 -0.57 -13.10 16 12 C 0.09 1.54 2.68 -66.59 -0.18 1.36 16 13 H 0.08 1.54 7.06 -51.93 -0.37 1.18 16 14 C -0.16 -2.19 6.24 -25.08 -0.16 -2.35 16 15 C -0.12 -1.46 6.91 -24.70 -0.17 -1.63 16 16 C -0.12 -1.37 5.97 -25.03 -0.15 -1.52 16 17 C -0.08 -1.14 2.24 -89.50 -0.20 -1.34 16 18 H 0.09 1.40 7.91 -51.93 -0.41 0.99 16 19 C 0.09 1.21 2.41 -65.79 -0.16 1.05 16 20 H 0.08 1.11 8.13 -51.93 -0.42 0.68 16 21 C -0.15 -1.85 6.10 -24.88 -0.15 -2.00 16 22 C -0.15 -1.80 6.93 -25.38 -0.18 -1.98 16 23 C 0.04 0.58 7.52 -2.75 -0.02 0.56 16 24 N -0.66 -10.89 6.87 -103.17 -0.71 -11.60 16 25 C -0.22 -4.87 9.88 -26.73 -0.26 -5.13 16 26 C -0.16 -3.80 9.48 -26.73 -0.25 -4.05 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.07 1.80 7.93 -51.93 -0.41 1.38 16 29 H -0.01 -0.26 7.79 -51.93 -0.40 -0.67 16 30 H 0.33 6.18 8.49 -39.30 -0.33 5.85 16 31 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 7.84 -51.93 -0.41 0.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.84 8.05 -51.93 -0.42 0.43 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.35 6.66 8.62 -39.29 -0.34 6.32 16 44 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 45 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 46 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 47 H 0.06 1.33 8.14 -51.94 -0.42 0.91 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -26.92 364.95 -11.59 -38.51 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -8.96 Total: 12.55 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.55 Total: -24.18 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.56 Total: -48.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.92 -11.59 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423098293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds