Wall clock time and date at job start Tue Mar 31 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00512 * 2 1 4 4 H 1.48499 * 109.47280 * 270.00062 * 3 2 1 5 5 H 1.48502 * 109.46663 * 29.99645 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99826 * 3 2 1 7 7 C 1.37884 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 173.40880 * 7 2 1 9 9 C 1.50699 * 119.99972 * 353.40121 * 7 2 1 10 10 C 1.53001 * 115.54594 * 84.93752 * 9 7 2 11 11 N 1.46893 * 109.47288 * 39.53000 * 10 9 7 12 12 C 1.46907 * 110.99562 * 185.44185 * 11 10 9 13 13 H 1.08996 * 110.01729 * 33.60975 * 12 11 10 14 14 C 1.54262 * 110.07424 * 272.18370 * 12 11 10 15 15 C 1.54886 * 104.20204 * 264.30846 * 14 12 11 16 16 C 1.54966 * 102.77332 * 322.08300 * 15 14 12 17 17 C 1.53886 * 110.02965 * 154.99941 * 12 11 10 18 18 H 1.08999 * 110.03168 * 359.97438 * 17 12 11 19 19 C 1.52993 * 110.03048 * 238.61737 * 17 12 11 20 20 H 1.09000 * 110.72688 * 299.04665 * 19 17 12 21 21 C 1.54936 * 110.66862 * 175.94782 * 19 17 12 22 22 C 1.54586 * 102.92591 * 204.14873 * 21 19 17 23 23 C 1.53996 * 105.14126 * 21.96180 * 22 21 19 24 24 N 1.47907 * 107.05416 * 1.22135 * 23 22 21 25 25 C 1.53003 * 117.51913 * 230.63210 * 9 7 2 26 26 C 1.53002 * 60.00026 * 107.48659 * 25 9 7 27 27 H 0.96999 * 119.99562 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46807 * 279.52305 * 10 9 7 29 29 H 1.09003 * 109.46823 * 159.53293 * 10 9 7 30 30 H 1.00892 * 111.00300 * 61.48544 * 11 10 9 31 31 H 1.09003 * 110.48619 * 22.98761 * 14 12 11 32 32 H 1.08996 * 110.48607 * 145.49170 * 14 12 11 33 33 H 1.09005 * 110.75708 * 80.36584 * 15 14 12 34 34 H 1.08996 * 110.75677 * 203.55839 * 15 14 12 35 35 H 1.08995 * 110.47637 * 279.23266 * 16 15 14 36 36 H 1.09004 * 110.52942 * 156.56418 * 16 15 14 37 37 H 1.09005 * 110.71839 * 85.79236 * 21 19 17 38 38 H 1.08996 * 110.87861 * 322.58806 * 21 19 17 39 39 H 1.09001 * 110.31342 * 263.04330 * 22 21 19 40 40 H 1.09004 * 110.39528 * 140.91923 * 22 21 19 41 41 H 1.09006 * 109.91446 * 241.87216 * 23 22 21 42 42 H 1.09002 * 109.92176 * 120.57693 * 23 22 21 43 43 H 1.00897 * 110.99909 * 95.18540 * 24 23 22 44 44 H 1.08994 * 117.50020 * 214.97712 * 25 9 7 45 45 H 1.08998 * 117.50046 * 359.97438 * 25 9 7 46 46 H 1.08996 * 117.49534 * 252.51538 * 26 25 9 47 47 H 1.08989 * 117.52080 * 107.48097 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0791 -1.1973 -0.1079 9 6 1.2584 -2.4949 0.1489 10 6 0.6897 -3.0817 -1.1447 11 7 1.6542 -2.8884 -2.2356 12 6 1.0899 -3.3234 -3.5203 13 1 0.0176 -3.1291 -3.5418 14 6 1.3592 -4.8271 -3.7349 15 6 2.6456 -4.8636 -4.5966 16 6 2.4498 -3.6623 -5.5558 17 6 1.7829 -2.5833 -4.6780 18 1 2.5375 -1.9011 -4.2865 19 6 0.7497 -1.8066 -5.4965 20 1 0.0120 -2.4830 -5.9281 21 6 1.4431 -0.9748 -6.6046 22 6 0.4234 0.1543 -6.8786 23 6 -0.4401 0.2340 -5.6060 24 7 0.0875 -0.7732 -4.6600 25 6 1.7556 -3.4771 1.2114 26 6 0.4538 -2.7045 1.4333 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2447 -2.5779 -1.3921 29 1 0.5032 -4.1471 -1.0091 30 1 2.5210 -3.3665 -2.0409 31 1 1.5256 -5.3249 -2.7796 32 1 0.5284 -5.2913 -4.2662 33 1 3.5305 -4.7213 -3.9761 34 1 2.7118 -5.7988 -5.1525 35 1 1.7966 -3.9380 -6.3836 36 1 3.4116 -3.3100 -5.9285 37 1 1.6000 -1.5782 -7.4987 38 1 2.3875 -0.5635 -6.2481 39 1 -0.1953 -0.0956 -7.7405 40 1 0.9393 1.0999 -7.0456 41 1 -1.4789 0.0086 -5.8474 42 1 -0.3654 1.2295 -5.1683 43 1 0.7419 -0.3559 -4.0154 44 1 1.6776 -4.5413 0.9889 45 1 2.6229 -3.1828 1.8023 46 1 0.4645 -1.9017 2.1704 47 1 -0.4808 -3.2600 1.3567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423098293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:54 Heat of formation + Delta-G solvation = -1.089231 kcal Electronic energy + Delta-G solvation = -23214.832738 eV Core-core repulsion = 20203.407442 eV Total energy + Delta-G solvation = -3011.425296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54963 -38.78447 -37.87513 -34.25089 -33.74728 -31.45461 -30.74714 -28.57872 -27.43343 -27.12443 -25.15324 -22.87060 -22.24172 -21.90913 -21.08819 -20.76038 -20.38459 -17.96405 -17.14039 -16.72730 -16.48673 -16.01772 -15.88383 -15.48110 -14.98317 -14.76450 -14.57071 -14.53034 -14.26066 -13.75806 -13.49526 -13.25844 -13.04650 -12.81600 -12.65266 -12.41865 -12.33001 -12.21499 -12.00338 -11.90750 -11.82372 -11.80749 -11.49489 -11.47920 -11.40525 -11.29057 -11.06814 -10.64747 -10.23964 -9.80958 -9.34803 -8.74521 -7.89938 -5.93472 1.44933 1.47000 1.54610 2.55053 3.31807 3.40122 3.43522 3.63408 3.76209 3.90858 3.92625 4.02585 4.16665 4.23080 4.39499 4.46058 4.57175 4.58152 4.60700 4.73079 4.79231 4.81008 4.81898 4.86177 4.89488 4.93919 4.98548 5.02301 5.03397 5.07244 5.09836 5.18109 5.20888 5.27093 5.32194 5.36266 5.41052 5.48919 5.63772 5.68747 5.80308 5.97205 6.10988 6.48398 6.52751 6.74741 6.97318 7.07447 7.69514 9.19096 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.007117 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.828474 B = 3933.024103 C = 5326.579631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.034 3.966 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.045 0.955 9 C 0.027 3.973 10 C 0.133 3.867 11 N -0.655 5.655 12 C 0.095 3.905 13 H 0.055 0.945 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.073 4.073 18 H 0.062 0.938 19 C 0.088 3.912 20 H 0.082 0.918 21 C -0.144 4.144 22 C -0.145 4.145 23 C 0.037 3.963 24 N -0.685 5.685 25 C -0.193 4.193 26 C -0.169 4.169 27 H 0.250 0.750 28 H 0.034 0.966 29 H 0.000 1.000 30 H 0.330 0.670 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.334 0.666 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -6.616 -14.591 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.026 3.974 10 C 0.003 3.997 11 N -0.284 5.284 12 C -0.015 4.015 13 H 0.073 0.927 14 C -0.191 4.191 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.080 0.920 19 C -0.022 4.022 20 H 0.100 0.900 21 C -0.183 4.183 22 C -0.184 4.184 23 C -0.093 4.093 24 N -0.313 5.313 25 C -0.230 4.230 26 C -0.207 4.207 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.018 0.982 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.187 -6.162 -14.525 15.929 hybrid contribution 0.782 0.829 0.381 1.201 sum 2.969 -5.333 -14.144 15.405 Atomic orbital electron populations 1.70127 1.06702 1.25850 1.51554 1.25371 0.95161 1.00746 0.95301 0.85930 0.78771 0.81301 0.77655 1.20739 1.22046 1.19967 1.20269 0.91989 0.89606 1.48325 0.93678 1.19059 0.97716 0.93969 0.86641 1.21070 0.94177 0.93253 0.91207 1.60213 1.05531 1.61861 1.00762 1.22143 0.97880 0.91851 0.89647 0.92658 1.23071 0.99060 0.97041 0.99934 1.22422 0.96678 0.98693 0.97439 1.22344 1.00529 0.94175 0.97426 1.21852 0.96247 0.96998 0.94190 0.91966 1.22761 0.94096 0.93608 0.91699 0.90043 1.23108 0.98203 0.97158 0.99872 1.22762 0.97878 0.99179 0.98543 1.22768 0.99505 0.94913 0.92077 1.62720 1.39166 1.12984 1.16394 1.23053 0.97095 0.96319 1.06543 1.22376 0.93353 1.01295 1.03664 0.94114 0.94791 0.98245 0.85201 0.92903 0.91226 0.91965 0.90129 0.90466 0.90863 0.89249 0.92210 0.90079 0.91307 0.91125 0.92848 0.84964 0.89634 0.90654 0.92565 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.59 12.94 21.45 0.28 -52.31 16 2 C 0.03 1.86 5.39 84.66 0.46 2.31 16 3 Si 0.94 44.72 29.54 68.60 2.03 46.74 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.46 -25.08 8.15 25.60 0.21 -24.87 16 8 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 9 C 0.03 1.31 1.74 -52.93 -0.09 1.22 16 10 C 0.13 5.95 5.65 86.30 0.49 6.44 16 11 N -0.65 -25.76 5.40 -487.82 -2.64 -28.39 16 12 C 0.10 3.10 2.68 45.64 0.12 3.22 16 13 H 0.06 2.11 7.06 -2.39 -0.02 2.09 16 14 C -0.15 -3.97 6.24 31.67 0.20 -3.77 16 15 C -0.11 -2.43 6.91 31.91 0.22 -2.21 16 16 C -0.11 -2.22 5.97 31.69 0.19 -2.03 16 17 C -0.07 -2.05 2.24 -10.07 -0.02 -2.07 16 18 H 0.06 2.04 7.91 -2.39 -0.02 2.02 16 19 C 0.09 2.38 2.41 45.26 0.11 2.49 16 20 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 21 C -0.14 -3.19 6.10 31.80 0.19 -3.00 16 22 C -0.14 -3.16 6.93 31.47 0.22 -2.94 16 23 C 0.04 1.05 7.52 86.45 0.65 1.70 16 24 N -0.69 -23.17 6.87 -480.33 -3.30 -26.47 16 25 C -0.19 -8.26 9.88 30.60 0.30 -7.96 16 26 C -0.17 -8.11 9.48 30.60 0.29 -7.82 16 27 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.03 1.77 7.93 -2.39 -0.02 1.75 16 29 H 0.00 -0.01 7.79 -2.39 -0.02 -0.03 16 30 H 0.33 12.42 8.49 -89.70 -0.76 11.66 16 31 H 0.05 1.47 7.85 -2.39 -0.02 1.45 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.40 7.84 -2.39 -0.02 1.38 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.06 1.41 8.05 -2.39 -0.02 1.40 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.33 13.20 8.62 -89.70 -0.77 12.43 16 44 H 0.09 3.20 8.08 -2.39 -0.02 3.19 16 45 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -58.96 364.95 -0.71 -59.67 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.61 Total: 40.05 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.53 Total: -39.29 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.66 Total: -107.18 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -58.96 -0.71 -59.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423098293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.578 kcal (2) G-P(sol) polarization free energy of solvation -58.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds