Wall clock time and date at job start Tue Mar 31 2020 00:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 N 1.46498 * 109.47040 * 180.02562 * 3 2 1 5 5 N 1.40451 * 126.82496 * 270.00304 * 4 3 2 6 6 C 1.30706 * 106.79250 * 179.97438 * 5 4 3 7 7 N 1.33239 * 108.94968 * 0.02562 * 6 5 4 8 8 C 1.30837 * 109.82784 * 359.97438 * 7 6 5 9 9 C 1.50698 * 125.96085 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47361 * 89.97217 * 9 8 7 11 11 C 1.46899 * 111.00065 * 169.99799 * 10 9 8 12 12 C 1.50699 * 109.47298 * 284.13491 * 11 10 9 13 13 H 1.08003 * 119.99713 * 4.98029 * 12 11 10 14 14 C 1.37875 * 120.00226 * 184.97303 * 12 11 10 15 15 N 1.31510 * 119.99938 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99606 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47037 * 90.00461 * 16 14 12 18 18 H 1.48505 * 109.46879 * 209.99921 * 16 14 12 19 19 H 1.48491 * 109.47336 * 329.99822 * 16 14 12 20 20 C 1.46903 * 111.00003 * 293.95518 * 10 9 8 21 21 C 1.52996 * 109.46592 * 163.84320 * 20 10 9 22 22 C 1.52998 * 117.49896 * 245.45347 * 21 20 10 23 23 C 1.53012 * 117.49555 * 176.79831 * 21 20 10 24 24 H 1.08996 * 109.47155 * 59.99630 * 1 2 3 25 25 H 1.08997 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46720 * 299.99613 * 1 2 3 27 27 H 1.08998 * 109.46658 * 240.00246 * 2 1 3 28 28 H 1.08994 * 109.46944 * 119.99621 * 2 1 3 29 29 H 1.08998 * 109.47298 * 60.00638 * 3 2 1 30 30 H 1.08996 * 109.47552 * 300.00126 * 3 2 1 31 31 H 1.07999 * 125.52636 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47289 * 209.97634 * 9 8 7 33 33 H 1.09003 * 109.46978 * 329.97490 * 9 8 7 34 34 H 1.08995 * 109.46792 * 44.13788 * 11 10 9 35 35 H 1.08994 * 109.46966 * 164.13774 * 11 10 9 36 36 H 0.97006 * 119.99987 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46761 * 283.84321 * 20 10 9 38 38 H 1.09004 * 109.46915 * 43.84445 * 20 10 9 39 39 H 1.08997 * 115.55600 * 31.13165 * 21 20 10 40 40 H 1.09004 * 117.50109 * 0.02562 * 22 21 20 41 41 H 1.09002 * 117.50187 * 145.02432 * 22 21 20 42 42 H 1.08997 * 117.49926 * 214.98108 * 23 21 20 43 43 H 1.08994 * 117.49616 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3473 1.4424 1.1233 6 6 5.5751 1.4420 0.6750 7 7 5.5493 1.4424 -0.6571 8 6 4.3102 1.4426 -1.0770 9 6 3.8635 1.4426 -2.5163 10 7 3.7188 0.0576 -2.9842 11 6 3.0619 0.0114 -4.2973 12 6 1.5854 0.2617 -4.1295 13 1 1.1879 0.5168 -3.1582 14 6 0.7419 0.1650 -5.2158 15 7 -0.5466 0.3839 -5.0694 16 14 1.4294 -0.2768 -6.8956 17 1 1.4121 -1.7520 -7.0651 18 1 0.5971 0.3526 -7.9522 19 1 2.8253 0.2177 -7.0049 20 6 5.0196 -0.6240 -3.0219 21 6 4.8008 -2.1353 -3.1154 22 6 5.2538 -2.9894 -1.9296 23 6 6.0412 -3.0222 -3.2419 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 6.4660 1.4421 1.2855 32 1 2.9058 1.9562 -2.5996 33 1 4.6058 1.9567 -3.1270 34 1 3.4891 0.7775 -4.9443 35 1 3.2154 -0.9700 -4.7459 36 1 -1.1400 0.3163 -5.8338 37 1 5.5828 -0.2839 -3.8909 38 1 5.5773 -0.3930 -2.1142 39 1 3.9021 -2.4483 -3.6468 40 1 5.7074 -2.4746 -1.0826 41 1 4.6533 -3.8645 -1.6810 42 1 5.9583 -3.9188 -3.8561 43 1 7.0130 -2.5289 -3.2580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447856275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:28 Heat of formation + Delta-G solvation = 113.618950 kcal Electronic energy + Delta-G solvation = -22774.460211 eV Core-core repulsion = 19664.468691 eV Total energy + Delta-G solvation = -3109.991520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80913 -37.91491 -35.81739 -35.28080 -32.64549 -31.64927 -31.25011 -28.22456 -27.49662 -26.14182 -23.93524 -22.12743 -22.06512 -21.44499 -21.12482 -19.90577 -19.34461 -17.11041 -16.66873 -15.69633 -15.35047 -15.02785 -14.77517 -14.56950 -14.18587 -13.88704 -13.53064 -13.22821 -13.00596 -12.58968 -12.46545 -12.36750 -11.85521 -11.77570 -11.51202 -11.34801 -11.26631 -11.11222 -10.89983 -10.63325 -10.47199 -10.36999 -10.06451 -9.89625 -9.72353 -9.58882 -9.47464 -9.31975 -9.16722 -8.63753 -7.55585 -6.13881 -4.11211 1.91643 2.63511 3.19779 3.23491 3.31765 3.33820 4.09436 4.35188 4.39108 4.68772 4.79358 5.06228 5.14895 5.18703 5.19984 5.26321 5.33893 5.46695 5.49245 5.70257 5.77820 5.83964 5.85810 5.94926 6.00503 6.04131 6.12230 6.16190 6.18680 6.32725 6.36141 6.53258 6.61833 6.66157 6.70436 6.73058 6.75017 6.84884 7.12601 7.50759 7.74655 7.83141 8.42324 8.54300 8.92877 9.48441 10.98583 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.007278 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.571053 B = 3846.313102 C = 4953.540008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.131 3.869 4 N -0.359 5.359 5 N -0.332 5.332 6 C 0.188 3.812 7 N -0.554 5.554 8 C 0.302 3.698 9 C 0.134 3.866 10 N -0.516 5.516 11 C 0.162 3.838 12 C -0.510 4.510 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.870 3.130 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.076 3.924 21 C -0.133 4.133 22 C -0.176 4.176 23 C -0.187 4.187 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.210 0.790 32 H 0.107 0.893 33 H 0.061 0.939 34 H -0.007 1.007 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.031 0.969 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 -0.679 7.443 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.148 5.148 5 N -0.160 5.160 6 C -0.115 4.115 7 N -0.283 5.283 8 C 0.025 3.975 9 C 0.003 3.997 10 N -0.241 5.241 11 C 0.036 3.964 12 C -0.548 4.548 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.052 4.052 21 C -0.152 4.152 22 C -0.213 4.213 23 C -0.225 4.225 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.226 0.774 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.010 0.990 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.600 -0.897 8.233 11.240 hybrid contribution 0.635 0.057 -1.559 1.684 sum 8.234 -0.840 6.674 10.632 Atomic orbital electron populations 1.21640 0.94288 1.02371 1.01957 1.21874 0.96767 0.94865 1.03953 1.21937 0.73010 0.99831 1.04255 1.50356 1.07931 1.53023 1.03533 1.77938 1.01993 1.27001 1.09105 1.25782 0.95672 0.99295 0.90703 1.70472 1.19994 1.26488 1.11323 1.24412 0.85731 0.94374 0.92948 1.20534 1.01986 0.92806 0.84338 1.61877 1.19566 1.11813 1.30851 1.20264 0.95601 0.96238 0.84306 1.20982 0.89197 1.47409 0.97196 0.89968 1.24844 0.94690 0.94926 0.98513 1.69868 1.02900 1.49763 1.31008 0.86951 0.79489 0.79086 0.84777 1.20208 1.21257 1.19223 1.21782 0.91039 0.91529 1.00840 1.22304 0.98148 0.92914 1.01789 1.22902 1.03847 1.02544 0.92023 1.22938 0.96314 1.02207 1.01037 0.91145 0.92278 0.93519 0.88643 0.92417 0.89449 0.87919 0.77380 0.87464 0.92134 0.98961 0.95032 0.92643 0.95059 0.90169 0.87043 0.89455 0.89392 0.89231 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.14 -2.09 6.26 -26.73 -0.17 -2.26 16 3 C 0.13 1.94 6.30 -4.04 -0.03 1.91 16 4 N -0.36 -5.94 3.64 -58.34 -0.21 -6.15 16 5 N -0.33 -5.48 12.70 29.29 0.37 -5.11 16 6 C 0.19 2.85 13.03 -91.82 -1.20 1.65 16 7 N -0.55 -9.38 10.07 -11.97 -0.12 -9.50 16 8 C 0.30 5.19 6.66 -155.69 -1.04 4.16 16 9 C 0.13 2.37 5.11 -4.97 -0.03 2.34 16 10 N -0.52 -9.84 4.37 -237.52 -1.04 -10.88 16 11 C 0.16 3.54 3.61 -4.98 -0.02 3.52 16 12 C -0.51 -12.87 9.17 -34.44 -0.32 -13.18 16 13 H 0.08 2.19 7.90 -52.48 -0.41 1.78 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -25.39 13.96 55.43 0.77 -24.61 16 16 Si 0.87 20.25 27.37 -169.99 -4.65 15.60 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.03 6.69 56.52 0.38 -5.65 16 20 C 0.08 1.33 5.11 -3.82 -0.02 1.31 16 21 C -0.13 -2.19 5.58 -90.62 -0.51 -2.69 16 22 C -0.18 -2.57 10.18 -26.69 -0.27 -2.84 16 23 C -0.19 -2.56 10.26 -26.69 -0.27 -2.84 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 31 H 0.21 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.11 1.95 6.31 -51.93 -0.33 1.62 16 33 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 34 H -0.01 -0.16 7.40 -51.93 -0.38 -0.55 16 35 H 0.03 0.71 5.62 -51.93 -0.29 0.41 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 38 H 0.08 1.41 5.80 -51.93 -0.30 1.11 16 39 H 0.11 2.03 6.88 -51.93 -0.36 1.67 16 40 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -28.45 350.52 -10.27 -38.72 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.09 Total: 5.42 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.58 Total: -8.78 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.22 Total: -56.25 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.65 Total: 15.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.45 -10.27 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447856275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.343 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds