Wall clock time and date at job start Tue Mar 31 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 N 1.46498 * 109.47040 * 180.02562 * 3 2 1 5 5 N 1.40451 * 126.82496 * 270.00304 * 4 3 2 6 6 C 1.30706 * 106.79250 * 179.97438 * 5 4 3 7 7 N 1.33239 * 108.94968 * 0.02562 * 6 5 4 8 8 C 1.30837 * 109.82784 * 359.97438 * 7 6 5 9 9 C 1.50698 * 125.96085 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47361 * 89.97217 * 9 8 7 11 11 C 1.46899 * 111.00065 * 169.99799 * 10 9 8 12 12 C 1.50699 * 109.47298 * 284.13491 * 11 10 9 13 13 H 1.08003 * 119.99713 * 4.98029 * 12 11 10 14 14 C 1.37875 * 120.00226 * 184.97303 * 12 11 10 15 15 N 1.31510 * 119.99938 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99606 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47037 * 90.00461 * 16 14 12 18 18 H 1.48505 * 109.46879 * 209.99921 * 16 14 12 19 19 H 1.48491 * 109.47336 * 329.99822 * 16 14 12 20 20 C 1.46903 * 111.00003 * 293.95518 * 10 9 8 21 21 C 1.52996 * 109.46592 * 163.84320 * 20 10 9 22 22 C 1.52998 * 117.49896 * 245.45347 * 21 20 10 23 23 C 1.53012 * 117.49555 * 176.79831 * 21 20 10 24 24 H 1.08996 * 109.47155 * 59.99630 * 1 2 3 25 25 H 1.08997 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46720 * 299.99613 * 1 2 3 27 27 H 1.08998 * 109.46658 * 240.00246 * 2 1 3 28 28 H 1.08994 * 109.46944 * 119.99621 * 2 1 3 29 29 H 1.08998 * 109.47298 * 60.00638 * 3 2 1 30 30 H 1.08996 * 109.47552 * 300.00126 * 3 2 1 31 31 H 1.07999 * 125.52636 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47289 * 209.97634 * 9 8 7 33 33 H 1.09003 * 109.46978 * 329.97490 * 9 8 7 34 34 H 1.08995 * 109.46792 * 44.13788 * 11 10 9 35 35 H 1.08994 * 109.46966 * 164.13774 * 11 10 9 36 36 H 0.97006 * 119.99987 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46761 * 283.84321 * 20 10 9 38 38 H 1.09004 * 109.46915 * 43.84445 * 20 10 9 39 39 H 1.08997 * 115.55600 * 31.13165 * 21 20 10 40 40 H 1.09004 * 117.50109 * 0.02562 * 22 21 20 41 41 H 1.09002 * 117.50187 * 145.02432 * 22 21 20 42 42 H 1.08997 * 117.49926 * 214.98108 * 23 21 20 43 43 H 1.08994 * 117.49616 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3473 1.4424 1.1233 6 6 5.5751 1.4420 0.6750 7 7 5.5493 1.4424 -0.6571 8 6 4.3102 1.4426 -1.0770 9 6 3.8635 1.4426 -2.5163 10 7 3.7188 0.0576 -2.9842 11 6 3.0619 0.0114 -4.2973 12 6 1.5854 0.2617 -4.1295 13 1 1.1879 0.5168 -3.1582 14 6 0.7419 0.1650 -5.2158 15 7 -0.5466 0.3839 -5.0694 16 14 1.4294 -0.2768 -6.8956 17 1 1.4121 -1.7520 -7.0651 18 1 0.5971 0.3526 -7.9522 19 1 2.8253 0.2177 -7.0049 20 6 5.0196 -0.6240 -3.0219 21 6 4.8008 -2.1353 -3.1154 22 6 5.2538 -2.9894 -1.9296 23 6 6.0412 -3.0222 -3.2419 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 6.4660 1.4421 1.2855 32 1 2.9058 1.9562 -2.5996 33 1 4.6058 1.9567 -3.1270 34 1 3.4891 0.7775 -4.9443 35 1 3.2154 -0.9700 -4.7459 36 1 -1.1400 0.3163 -5.8338 37 1 5.5828 -0.2839 -3.8909 38 1 5.5773 -0.3930 -2.1142 39 1 3.9021 -2.4483 -3.6468 40 1 5.7074 -2.4746 -1.0826 41 1 4.6533 -3.8645 -1.6810 42 1 5.9583 -3.9188 -3.8561 43 1 7.0130 -2.5289 -3.2580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447856275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:27 Heat of formation + Delta-G solvation = 98.794463 kcal Electronic energy + Delta-G solvation = -22775.103049 eV Core-core repulsion = 19664.468691 eV Total energy + Delta-G solvation = -3110.634358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.08818 -39.30391 -37.16543 -36.55624 -34.60747 -32.91454 -32.65650 -30.01263 -28.84688 -27.39772 -25.56742 -23.32022 -23.28910 -22.97681 -22.44215 -21.22084 -20.75853 -18.98925 -18.02972 -17.12435 -16.69778 -16.41167 -16.21341 -16.03951 -15.55391 -15.31440 -14.96830 -14.57213 -14.38203 -14.23477 -13.97642 -13.74364 -13.43241 -13.15972 -12.96922 -12.67277 -12.50866 -12.38545 -12.37806 -12.30850 -11.96327 -11.86197 -11.64788 -11.40444 -11.17084 -11.00802 -10.83705 -10.68422 -10.63053 -10.49168 -9.09690 -8.19817 -6.20146 0.61080 1.37630 1.38589 1.41510 1.49004 1.94938 2.39721 2.85410 3.07048 3.16788 3.36177 3.57997 3.81367 3.91243 3.95797 4.04300 4.07692 4.22332 4.27963 4.41921 4.48340 4.56666 4.59561 4.67187 4.70766 4.76742 4.77972 4.83818 4.96085 5.02562 5.05028 5.10507 5.26371 5.26730 5.37325 5.39083 5.43406 5.57571 5.61507 5.81462 6.02580 6.24421 6.63085 6.86077 7.15263 7.42416 8.95155 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.007278 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.571053 B = 3846.313102 C = 4953.540008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.132 3.868 4 N -0.363 5.363 5 N -0.345 5.345 6 C 0.192 3.808 7 N -0.563 5.563 8 C 0.293 3.707 9 C 0.138 3.862 10 N -0.523 5.523 11 C 0.173 3.827 12 C -0.502 4.502 13 H 0.056 0.944 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.927 3.073 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.253 1.253 20 C 0.084 3.916 21 C -0.160 4.160 22 C -0.172 4.172 23 C -0.163 4.163 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.067 0.933 34 H -0.007 1.007 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.111 -1.150 7.924 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.010 3.990 4 N -0.152 5.152 5 N -0.174 5.174 6 C -0.110 4.110 7 N -0.293 5.293 8 C 0.016 3.984 9 C 0.008 3.992 10 N -0.248 5.248 11 C 0.046 3.954 12 C -0.541 4.541 13 H 0.074 0.926 14 C -0.179 4.179 15 N -0.581 5.581 16 Si 0.752 3.248 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.177 1.177 20 C -0.044 4.044 21 C -0.178 4.178 22 C -0.209 4.209 23 C -0.200 4.200 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.265 0.735 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.010 0.990 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.650 -1.369 8.728 13.083 hybrid contribution 0.025 0.214 -1.589 1.604 sum 9.674 -1.155 7.139 12.079 Atomic orbital electron populations 1.21568 0.93499 1.02396 1.02059 1.21704 0.97311 0.94960 1.02275 1.21990 0.72516 0.99468 1.04995 1.50459 1.08371 1.52873 1.03519 1.77928 1.02576 1.27721 1.09158 1.26583 0.96503 0.97594 0.90316 1.70479 1.19680 1.26739 1.12380 1.24220 0.86273 0.95154 0.92705 1.20410 1.01581 0.92004 0.85193 1.61758 1.20933 1.12886 1.29195 1.20006 0.93648 0.95957 0.85771 1.21196 0.91063 1.45809 0.96000 0.92571 1.25573 0.94864 0.95287 1.02156 1.70003 1.04270 1.51827 1.31984 0.86016 0.79440 0.78885 0.80418 1.19786 1.21364 1.17660 1.21738 0.89823 0.92011 1.00798 1.22201 0.99092 0.92695 1.03840 1.22918 1.03879 1.02086 0.92015 1.23032 0.95475 1.01603 0.99926 0.93606 0.92327 0.90712 0.92138 0.92020 0.87216 0.88634 0.73500 0.88718 0.91460 0.98969 0.95006 0.92770 0.94892 0.90158 0.89245 0.89588 0.88778 0.87689 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.12 -3.84 6.26 30.60 0.19 -3.65 16 3 C 0.13 3.88 6.30 86.38 0.54 4.42 16 4 N -0.36 -11.77 3.64 -338.50 -1.23 -13.00 16 5 N -0.35 -10.80 12.70 -61.25 -0.78 -11.58 16 6 C 0.19 5.36 13.03 180.77 2.36 7.71 16 7 N -0.56 -18.16 10.07 -191.79 -1.93 -20.09 16 8 C 0.29 9.92 6.66 138.22 0.92 10.84 16 9 C 0.14 4.92 5.11 85.56 0.44 5.36 16 10 N -0.52 -20.02 4.37 -905.37 -3.96 -23.98 16 11 C 0.17 7.57 3.61 85.56 0.31 7.88 16 12 C -0.50 -26.02 9.17 25.60 0.23 -25.78 16 13 H 0.06 3.15 7.90 -2.91 -0.02 3.12 16 14 C 0.02 1.03 5.47 84.65 0.46 1.50 16 15 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 16 Si 0.93 41.76 27.37 68.60 1.88 43.64 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.25 -10.68 6.69 99.48 0.67 -10.02 16 20 C 0.08 2.85 5.11 86.30 0.44 3.29 16 21 C -0.16 -5.08 5.58 -10.79 -0.06 -5.14 16 22 C -0.17 -4.71 10.18 30.62 0.31 -4.40 16 23 C -0.16 -4.03 10.26 30.62 0.31 -3.72 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.10 2.94 7.11 -2.39 -0.02 2.92 16 31 H 0.25 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.09 3.56 6.31 -2.39 -0.02 3.54 16 33 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 34 H -0.01 -0.32 7.40 -2.39 -0.02 -0.34 16 35 H 0.03 1.41 5.62 -2.39 -0.01 1.40 16 36 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 37 H 0.03 1.10 8.05 -2.39 -0.02 1.08 16 38 H 0.08 2.72 5.80 -2.38 -0.01 2.71 16 39 H 0.09 3.25 6.88 -2.39 -0.02 3.24 16 40 H 0.09 2.38 8.04 -2.38 -0.02 2.36 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -61.11 350.52 2.39 -58.72 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.94 Total: 25.64 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 7.18 Total: -4.93 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -7.60 Total: -123.06 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.88 Total: 43.64 kcal Total: -61.11 2.39 -58.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447856275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.512 kcal (2) G-P(sol) polarization free energy of solvation -61.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds