Wall clock time and date at job start Tue Mar 31 2020 00:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47169 * 2 1 4 4 N 1.28715 * 125.86810 * 269.68881 * 3 2 1 5 5 N 1.28642 * 110.17936 * 179.81885 * 4 3 2 6 6 C 1.33778 * 108.88127 * 0.44839 * 5 4 3 7 7 C 1.50697 * 126.74972 * 179.71194 * 6 5 4 8 8 C 1.35318 * 125.87019 * 89.99774 * 3 2 1 9 9 C 1.50703 * 126.90769 * 0.02562 * 8 3 2 10 10 N 1.46905 * 109.46984 * 89.99992 * 9 8 3 11 11 C 1.46902 * 110.99399 * 169.99773 * 10 9 8 12 12 C 1.50705 * 109.47185 * 284.35302 * 11 10 9 13 13 H 1.07997 * 119.99661 * 4.82240 * 12 11 10 14 14 C 1.37873 * 119.99917 * 184.81904 * 12 11 10 15 15 N 1.31515 * 120.00350 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47182 * 59.99630 * 16 14 12 18 18 H 1.48498 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46975 * 299.99561 * 16 14 12 20 20 C 1.46894 * 111.00154 * 293.94868 * 10 9 8 21 21 C 1.52997 * 109.47199 * 168.03100 * 20 10 9 22 22 C 1.53005 * 117.49624 * 245.05887 * 21 20 10 23 23 C 1.52996 * 117.49868 * 176.40270 * 21 20 10 24 24 H 1.08999 * 109.47537 * 299.99599 * 1 2 3 25 25 H 1.09004 * 109.47268 * 60.00148 * 1 2 3 26 26 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47305 * 239.99972 * 2 1 3 28 28 H 1.09004 * 109.47268 * 119.99852 * 2 1 3 29 29 H 1.09005 * 109.47270 * 270.02661 * 7 6 5 30 30 H 1.08998 * 109.47133 * 30.02448 * 7 6 5 31 31 H 1.09001 * 109.47503 * 150.02144 * 7 6 5 32 32 H 1.09000 * 109.46659 * 209.99821 * 9 8 3 33 33 H 1.08993 * 109.47102 * 329.99877 * 9 8 3 34 34 H 1.08998 * 109.47406 * 44.35554 * 11 10 9 35 35 H 1.09005 * 109.46926 * 164.35939 * 11 10 9 36 36 H 0.96996 * 120.00135 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47350 * 288.03238 * 20 10 9 38 38 H 1.09004 * 109.46671 * 48.03051 * 20 10 9 39 39 H 1.08996 * 115.54921 * 30.72601 * 21 20 10 40 40 H 1.08992 * 117.50104 * 0.02562 * 22 21 20 41 41 H 1.09002 * 117.49330 * 145.01792 * 22 21 20 42 42 H 1.09006 * 117.49442 * 214.97678 * 23 21 20 43 43 H 1.08996 * 117.50237 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2750 2.0903 -1.0430 5 7 2.6825 3.2599 -0.6952 6 6 2.7073 3.3301 0.6405 7 6 3.1263 4.5140 1.4735 8 6 2.2825 2.1287 1.0965 9 6 2.1342 1.7079 2.5360 10 7 3.3921 1.1099 3.0034 11 6 3.3687 0.9046 4.4578 12 6 3.5641 2.2263 5.1550 13 1 3.6147 3.1383 4.5789 14 6 3.6781 2.2710 6.5283 15 7 3.6158 1.1604 7.2299 16 14 3.9196 3.9094 7.3925 17 1 2.7670 4.7985 7.0990 18 1 4.0122 3.6872 8.8578 19 1 5.1711 4.5450 6.9078 20 6 3.6707 -0.1483 2.2985 21 6 5.1088 -0.5854 2.5843 22 6 6.0855 -0.6144 1.4070 23 6 5.5683 -1.9249 2.0053 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1962 4.4568 1.6739 30 1 2.9067 5.4346 0.9328 31 1 2.5791 4.5070 2.4161 32 1 1.8972 2.5791 3.1466 33 1 1.3309 0.9761 2.6197 34 1 2.4087 0.4785 4.7492 35 1 4.1702 0.2223 4.7413 36 1 3.6964 1.1919 8.1960 37 1 2.9813 -0.9187 2.6439 38 1 3.5423 -0.0002 1.2262 39 1 5.5031 -0.2963 3.5584 40 1 5.7038 -0.3217 0.4290 41 1 7.1226 -0.3447 1.6068 42 1 6.2654 -2.5170 2.5984 43 1 4.8461 -2.4950 1.4210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449022602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:04 Heat of formation + Delta-G solvation = 123.025303 kcal Electronic energy + Delta-G solvation = -22770.258266 eV Core-core repulsion = 19660.674637 eV Total energy + Delta-G solvation = -3109.583629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00486 -38.03924 -35.86293 -35.36643 -32.88159 -32.08767 -30.79035 -28.08855 -27.76824 -26.27221 -24.40524 -23.95600 -22.15591 -21.58096 -20.90591 -20.32951 -19.36791 -16.95667 -16.63247 -16.13068 -15.49834 -14.99952 -14.86157 -14.41734 -14.12293 -13.65009 -13.50094 -13.23095 -13.01337 -12.71792 -12.64780 -12.31543 -12.10703 -11.98476 -11.72417 -11.59215 -11.34670 -11.29959 -11.05248 -10.87280 -10.71021 -10.67183 -10.35476 -10.09819 -9.82269 -9.70607 -9.62317 -9.33610 -8.55802 -8.46711 -7.44507 -6.08872 -4.10597 1.87311 2.54218 2.88843 3.30436 3.35251 3.38001 4.06912 4.37362 4.40927 4.65332 4.67912 4.76679 4.95591 5.06067 5.11017 5.20964 5.26720 5.28000 5.32481 5.35824 5.48638 5.66629 5.70966 5.79125 5.81151 5.88818 5.98041 6.01858 6.11357 6.15143 6.19484 6.31766 6.32884 6.36005 6.67949 6.72171 6.87748 7.05678 7.16951 7.71872 7.95007 8.03986 8.40049 8.84232 8.96467 9.54136 11.01499 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.006392 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.920550 B = 4379.441324 C = 5307.362763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 N -0.291 5.291 4 N -0.101 5.101 5 N -0.275 5.275 6 C -0.008 4.008 7 C -0.062 4.062 8 C 0.005 3.995 9 C 0.134 3.866 10 N -0.522 5.522 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.079 3.921 21 C -0.132 4.132 22 C -0.177 4.177 23 C -0.188 4.188 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.032 0.968 34 H -0.009 1.009 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -4.203 -10.752 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 N -0.086 5.086 4 N -0.079 5.079 5 N -0.142 5.142 6 C -0.146 4.146 7 C -0.121 4.121 8 C -0.126 4.126 9 C 0.004 3.996 10 N -0.247 5.247 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.050 4.050 21 C -0.150 4.150 22 C -0.214 4.214 23 C -0.225 4.225 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.050 0.950 34 H 0.008 0.992 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.006 -3.935 -12.222 13.187 hybrid contribution -0.494 -0.083 1.825 1.892 sum -3.500 -4.017 -10.397 11.683 Atomic orbital electron populations 1.22150 0.93184 1.03677 1.03635 1.22225 0.96322 0.77726 1.05833 1.47225 1.43546 1.13014 1.04804 1.78154 1.18369 0.99291 1.12086 1.74968 1.16564 1.10373 1.12337 1.21727 1.05156 0.96793 0.90925 1.20038 1.02384 0.92235 0.97407 1.22143 1.06143 0.92648 0.91706 1.20492 0.91706 1.01001 0.86387 1.62116 1.30778 1.23146 1.08699 1.19837 0.96238 0.97994 0.79145 1.21106 1.49308 0.93182 0.91000 0.91666 1.24962 0.95396 0.96538 0.97507 1.69934 1.50559 1.26607 1.06725 0.86592 0.78911 0.83873 0.78264 1.20189 1.21452 1.20076 1.21821 0.94142 0.91469 0.97546 1.22334 0.95182 0.98558 0.98934 1.22910 0.99605 1.01087 0.97821 1.22939 1.03973 0.90964 1.04635 0.91432 0.91392 0.89890 0.87865 0.87514 0.90372 0.91531 0.90327 0.86992 0.94973 0.99164 0.94051 0.92829 0.95431 0.92405 0.86341 0.89701 0.89141 0.89012 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.15 0.38 -1.18 16 2 C 0.10 1.12 5.89 -4.05 -0.02 1.10 16 3 N -0.29 -4.45 2.96 -57.05 -0.17 -4.62 16 4 N -0.10 -1.76 13.17 60.35 0.79 -0.97 16 5 N -0.28 -5.13 12.41 33.29 0.41 -4.72 16 6 C -0.01 -0.14 7.25 -82.78 -0.60 -0.74 16 7 C -0.06 -0.96 10.26 36.00 0.37 -0.59 16 8 C 0.01 0.09 5.66 -82.09 -0.46 -0.37 16 9 C 0.13 2.34 4.77 -4.97 -0.02 2.32 16 10 N -0.52 -10.20 4.40 -237.51 -1.05 -11.24 16 11 C 0.19 4.53 4.57 -4.97 -0.02 4.50 16 12 C -0.51 -13.12 8.61 -34.44 -0.30 -13.41 16 13 H 0.07 1.66 7.65 -52.49 -0.40 1.25 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 16 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.08 1.31 3.79 -3.83 -0.01 1.30 16 21 C -0.13 -2.19 5.57 -90.62 -0.50 -2.70 16 22 C -0.18 -2.59 10.18 -26.69 -0.27 -2.86 16 23 C -0.19 -2.53 10.25 -26.70 -0.27 -2.80 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.11 1.18 4.85 -51.93 -0.25 0.93 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.18 7.31 -51.93 -0.38 0.80 16 32 H 0.11 2.08 6.49 -51.93 -0.34 1.74 16 33 H 0.03 0.52 7.78 -51.93 -0.40 0.12 16 34 H -0.01 -0.24 8.00 -51.93 -0.42 -0.65 16 35 H 0.04 1.05 6.14 -51.93 -0.32 0.73 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.03 0.45 7.78 -51.93 -0.40 0.04 16 38 H 0.06 0.91 4.43 -51.93 -0.23 0.68 16 39 H 0.12 2.29 6.57 -51.93 -0.34 1.95 16 40 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -29.70 346.21 -7.76 -37.46 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.84 Total: 1.82 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.84 Total: -14.00 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.73 Total: -46.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.70 -7.76 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449022602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.483 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds