Wall clock time and date at job start Tue Mar 31 2020 00:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47169 * 2 1 4 4 N 1.28715 * 125.86810 * 269.68881 * 3 2 1 5 5 N 1.28642 * 110.17936 * 179.81885 * 4 3 2 6 6 C 1.33778 * 108.88127 * 0.44839 * 5 4 3 7 7 C 1.50697 * 126.74972 * 179.71194 * 6 5 4 8 8 C 1.35318 * 125.87019 * 89.99774 * 3 2 1 9 9 C 1.50703 * 126.90769 * 0.02562 * 8 3 2 10 10 N 1.46905 * 109.46984 * 89.99992 * 9 8 3 11 11 C 1.46902 * 110.99399 * 169.99773 * 10 9 8 12 12 C 1.50705 * 109.47185 * 284.35302 * 11 10 9 13 13 H 1.07997 * 119.99661 * 4.82240 * 12 11 10 14 14 C 1.37873 * 119.99917 * 184.81904 * 12 11 10 15 15 N 1.31515 * 120.00350 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47182 * 59.99630 * 16 14 12 18 18 H 1.48498 * 109.47170 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46975 * 299.99561 * 16 14 12 20 20 C 1.46894 * 111.00154 * 293.94868 * 10 9 8 21 21 C 1.52997 * 109.47199 * 168.03100 * 20 10 9 22 22 C 1.53005 * 117.49624 * 245.05887 * 21 20 10 23 23 C 1.52996 * 117.49868 * 176.40270 * 21 20 10 24 24 H 1.08999 * 109.47537 * 299.99599 * 1 2 3 25 25 H 1.09004 * 109.47268 * 60.00148 * 1 2 3 26 26 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47305 * 239.99972 * 2 1 3 28 28 H 1.09004 * 109.47268 * 119.99852 * 2 1 3 29 29 H 1.09005 * 109.47270 * 270.02661 * 7 6 5 30 30 H 1.08998 * 109.47133 * 30.02448 * 7 6 5 31 31 H 1.09001 * 109.47503 * 150.02144 * 7 6 5 32 32 H 1.09000 * 109.46659 * 209.99821 * 9 8 3 33 33 H 1.08993 * 109.47102 * 329.99877 * 9 8 3 34 34 H 1.08998 * 109.47406 * 44.35554 * 11 10 9 35 35 H 1.09005 * 109.46926 * 164.35939 * 11 10 9 36 36 H 0.96996 * 120.00135 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47350 * 288.03238 * 20 10 9 38 38 H 1.09004 * 109.46671 * 48.03051 * 20 10 9 39 39 H 1.08996 * 115.54921 * 30.72601 * 21 20 10 40 40 H 1.08992 * 117.50104 * 0.02562 * 22 21 20 41 41 H 1.09002 * 117.49330 * 145.01792 * 22 21 20 42 42 H 1.09006 * 117.49442 * 214.97678 * 23 21 20 43 43 H 1.08996 * 117.50237 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2750 2.0903 -1.0430 5 7 2.6825 3.2599 -0.6952 6 6 2.7073 3.3301 0.6405 7 6 3.1263 4.5140 1.4735 8 6 2.2825 2.1287 1.0965 9 6 2.1342 1.7079 2.5360 10 7 3.3921 1.1099 3.0034 11 6 3.3687 0.9046 4.4578 12 6 3.5641 2.2263 5.1550 13 1 3.6147 3.1383 4.5789 14 6 3.6781 2.2710 6.5283 15 7 3.6158 1.1604 7.2299 16 14 3.9196 3.9094 7.3925 17 1 2.7670 4.7985 7.0990 18 1 4.0122 3.6872 8.8578 19 1 5.1711 4.5450 6.9078 20 6 3.6707 -0.1483 2.2985 21 6 5.1088 -0.5854 2.5843 22 6 6.0855 -0.6144 1.4070 23 6 5.5683 -1.9249 2.0053 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1962 4.4568 1.6739 30 1 2.9067 5.4346 0.9328 31 1 2.5791 4.5070 2.4161 32 1 1.8972 2.5791 3.1466 33 1 1.3309 0.9761 2.6197 34 1 2.4087 0.4785 4.7492 35 1 4.1702 0.2223 4.7413 36 1 3.6964 1.1919 8.1960 37 1 2.9813 -0.9187 2.6439 38 1 3.5423 -0.0002 1.2262 39 1 5.5031 -0.2963 3.5584 40 1 5.7038 -0.3217 0.4290 41 1 7.1226 -0.3447 1.6068 42 1 6.2654 -2.5170 2.5984 43 1 4.8461 -2.4950 1.4210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449022602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:04 Heat of formation + Delta-G solvation = 105.073481 kcal Electronic energy + Delta-G solvation = -22771.036716 eV Core-core repulsion = 19660.674637 eV Total energy + Delta-G solvation = -3110.362079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.30476 -39.43413 -37.18605 -36.53668 -34.74384 -33.53815 -31.88384 -29.67765 -29.22976 -27.69252 -25.67993 -25.40543 -23.37950 -23.09980 -22.13639 -21.59650 -20.76924 -18.57698 -18.09602 -17.46718 -16.93478 -16.60153 -16.16650 -15.71997 -15.50051 -15.06355 -14.64240 -14.49397 -14.34255 -14.13647 -13.85149 -13.68871 -13.45904 -13.34539 -13.02455 -12.86261 -12.69989 -12.63694 -12.43194 -12.41004 -12.30799 -12.16801 -11.87160 -11.53789 -11.32968 -11.17926 -10.92095 -10.87652 -10.51640 -9.89822 -9.03434 -8.13505 -6.21487 0.56515 1.41208 1.46938 1.48547 1.52919 1.55679 2.45285 2.85694 3.17775 3.26465 3.41839 3.52091 3.76922 3.82428 3.86890 3.97090 4.00367 4.12233 4.19874 4.28474 4.39648 4.54959 4.59433 4.66906 4.68269 4.72027 4.73653 4.83751 4.88797 4.97415 5.00381 5.08473 5.12740 5.19056 5.22849 5.27681 5.36920 5.44300 5.67417 5.73695 6.11578 6.30977 6.58360 6.93232 7.47561 7.51064 8.96483 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.006392 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.920550 B = 4379.441324 C = 5307.362763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.088 3.912 3 N -0.278 5.278 4 N -0.107 5.107 5 N -0.301 5.301 6 C -0.019 4.019 7 C -0.060 4.060 8 C -0.001 4.001 9 C 0.142 3.858 10 N -0.531 5.531 11 C 0.211 3.789 12 C -0.515 4.515 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.934 5.934 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.289 1.289 19 H -0.272 1.272 20 C 0.085 3.915 21 C -0.163 4.163 22 C -0.172 4.172 23 C -0.161 4.161 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.046 0.954 34 H -0.030 1.030 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 -4.680 -11.945 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.031 4.031 3 N -0.074 5.074 4 N -0.085 5.085 5 N -0.167 5.167 6 C -0.158 4.158 7 C -0.119 4.119 8 C -0.133 4.133 9 C 0.012 3.988 10 N -0.256 5.256 11 C 0.085 3.915 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.191 4.191 15 N -0.575 5.575 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.215 1.215 19 H -0.197 1.197 20 C -0.043 4.043 21 C -0.182 4.182 22 C -0.209 4.209 23 C -0.198 4.198 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.064 0.936 34 H -0.013 1.013 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.378 -4.416 -13.451 14.555 hybrid contribution -0.389 -0.011 2.136 2.172 sum -3.767 -4.427 -11.314 12.720 Atomic orbital electron populations 1.22142 0.91523 1.05498 1.02851 1.22664 0.97719 0.75693 1.07063 1.47542 1.42092 1.13976 1.03770 1.78075 1.18487 0.99349 1.12616 1.74948 1.17789 1.11170 1.12804 1.22096 1.05039 0.97661 0.90959 1.20062 1.01913 0.92488 0.97397 1.21951 1.06914 0.92879 0.91587 1.20331 0.91196 1.00654 0.86622 1.61978 1.32106 1.24960 1.06568 1.19428 0.94042 0.96336 0.81672 1.21454 1.48384 0.94135 0.91399 0.91528 1.25749 0.95279 0.99682 0.98367 1.70055 1.51922 1.28631 1.06859 0.85616 0.79138 0.80065 0.76926 1.19017 1.21484 1.19705 1.21834 0.94417 0.90278 0.97793 1.22207 0.95574 1.02210 0.98224 1.22940 0.99187 1.01910 0.96902 1.23050 1.03575 0.89943 1.03262 0.92557 0.91774 0.86777 0.85607 0.87241 0.90920 0.89879 0.90294 0.88372 0.93561 1.01259 0.96415 0.92925 0.94755 0.90959 0.89903 0.89298 0.88891 0.88045 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.24 71.98 0.74 -1.86 16 2 C 0.09 1.74 5.89 86.38 0.51 2.25 16 3 N -0.28 -8.05 2.96 -334.41 -0.99 -9.04 16 4 N -0.11 -3.59 13.17 37.02 0.49 -3.10 16 5 N -0.30 -10.95 12.41 -48.60 -0.60 -11.55 16 6 C -0.02 -0.65 7.25 41.59 0.30 -0.34 16 7 C -0.06 -1.82 10.26 71.23 0.73 -1.09 16 8 C 0.00 -0.02 5.66 41.35 0.23 0.21 16 9 C 0.14 4.91 4.77 85.56 0.41 5.31 16 10 N -0.53 -20.83 4.40 -905.35 -3.99 -24.82 16 11 C 0.21 10.19 4.57 85.56 0.39 10.59 16 12 C -0.52 -27.05 8.61 25.60 0.22 -26.83 16 13 H 0.07 3.41 7.65 -2.91 -0.02 3.38 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 16 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 C 0.08 2.76 3.79 86.30 0.33 3.09 16 21 C -0.16 -5.39 5.57 -10.79 -0.06 -5.45 16 22 C -0.17 -4.77 10.18 30.62 0.31 -4.46 16 23 C -0.16 -3.98 10.25 30.62 0.31 -3.67 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.13 1.95 8.14 -2.39 -0.02 1.94 16 28 H 0.11 2.14 4.85 -2.39 -0.01 2.13 16 29 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.36 7.31 -2.39 -0.02 2.34 16 32 H 0.10 3.67 6.49 -2.39 -0.02 3.65 16 33 H 0.05 1.46 7.78 -2.39 -0.02 1.45 16 34 H -0.03 -1.56 8.00 -2.39 -0.02 -1.58 16 35 H 0.02 0.94 6.14 -2.38 -0.01 0.93 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.03 1.07 7.78 -2.39 -0.02 1.06 16 38 H 0.07 2.14 4.43 -2.38 -0.01 2.13 16 39 H 0.08 3.34 6.57 -2.39 -0.02 3.33 16 40 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 41 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -64.21 346.21 3.10 -61.11 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.99 Total: 17.62 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 4.89 Total: -21.40 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.81 Total: -101.83 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.21 3.10 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449022602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.188 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds