Wall clock time and date at job start Tue Mar 31 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46596 * 119.99531 * 2 1 3 5 5 H 1.09007 * 113.38497 * 286.92034 * 4 2 1 6 6 C 1.53514 * 114.16678 * 153.84419 * 4 2 1 7 7 N 1.47489 * 87.93155 * 220.32724 * 6 4 2 8 8 C 1.46891 * 110.99995 * 138.70278 * 7 6 4 9 9 C 1.53001 * 109.47199 * 74.02912 * 8 7 6 10 10 H 1.08989 * 109.47152 * 304.99693 * 9 8 7 11 11 C 1.47202 * 109.47149 * 65.00269 * 9 8 7 12 12 N 6.97914 * 121.77041 * 135.47438 * 2 1 3 13 13 C 1.53006 * 109.46868 * 184.99750 * 9 8 7 14 14 C 1.50698 * 109.46547 * 175.00162 * 13 9 8 15 15 H 1.07994 * 120.00583 * 0.02562 * 14 13 9 16 16 C 1.37888 * 119.99525 * 180.02562 * 14 13 9 17 17 N 1.31519 * 119.99725 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00143 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46949 * 89.99835 * 18 16 14 20 20 H 1.48500 * 109.46934 * 209.99990 * 18 16 14 21 21 H 1.48499 * 109.46911 * 330.00006 * 18 16 14 22 22 C 1.47483 * 87.83376 * 27.00654 * 7 6 4 23 23 H 1.09001 * 113.47024 * 87.81919 * 22 7 6 24 24 C 1.52999 * 113.47896 * 218.21877 * 22 7 6 25 25 C 1.52997 * 109.47317 * 280.50147 * 24 22 7 26 26 C 1.53006 * 109.46623 * 40.49966 * 24 22 7 27 27 H 1.09003 * 109.47185 * 300.00412 * 1 2 3 28 28 H 1.08997 * 109.46944 * 60.00335 * 1 2 3 29 29 H 1.09000 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47503 * 239.99483 * 2 1 3 31 31 H 1.08991 * 109.47386 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46541 * 299.99543 * 3 2 1 33 33 H 1.08995 * 109.47304 * 59.99360 * 3 2 1 34 34 H 1.08995 * 113.47606 * 105.56354 * 6 4 2 35 35 H 1.08994 * 113.47580 * 335.08958 * 6 4 2 36 36 H 1.09001 * 109.47225 * 194.02941 * 8 7 6 37 37 H 1.09003 * 109.47273 * 314.03019 * 8 7 6 38 38 H 1.08996 * 109.47531 * 295.00060 * 13 9 8 39 39 H 1.09001 * 109.46925 * 55.00641 * 13 9 8 40 40 H 0.96996 * 119.99872 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.46929 * 160.49250 * 24 22 7 42 42 H 1.09002 * 109.47153 * 299.99641 * 25 24 22 43 43 H 1.09001 * 109.46832 * 179.97438 * 25 24 22 44 44 H 1.09004 * 109.47261 * 59.99813 * 25 24 22 45 45 H 1.08993 * 109.46955 * 300.00075 * 26 24 22 46 46 H 1.09000 * 109.47050 * 59.99904 * 26 24 22 47 47 H 1.09001 * 109.47002 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.9095 -0.1446 2.1652 6 6 3.4347 -1.3427 1.0910 7 7 2.9422 -2.5091 1.8475 8 6 3.4288 -3.7630 1.2572 9 6 4.9127 -3.9392 1.5855 10 1 5.4650 -3.0600 1.2542 11 6 5.0775 -4.1035 3.0390 12 7 5.2047 -4.2302 4.1607 13 6 5.4500 -5.1792 0.8680 14 6 6.9366 -5.2840 1.0914 15 1 7.4471 -4.5409 1.6859 16 6 7.6451 -6.3288 0.5366 17 7 8.9427 -6.4200 0.7311 18 14 6.7623 -7.6138 -0.4924 19 1 6.7557 -7.1893 -1.9154 20 1 7.4650 -8.9160 -0.3675 21 1 5.3645 -7.7575 -0.0121 22 6 1.5892 -2.1845 1.3584 23 1 1.3544 -2.6404 0.3965 24 6 0.4935 -2.4088 2.4025 25 6 0.1524 -3.8986 2.4720 26 6 0.9880 -1.9344 3.7705 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 4.2180 -0.7889 1.6084 35 1 3.6926 -1.5730 0.0574 36 1 2.8641 -4.6006 1.6667 37 1 3.2973 -3.7305 0.1756 38 1 4.9596 -6.0688 1.2632 39 1 5.2479 -5.0971 -0.2000 40 1 9.4410 -7.1551 0.3412 41 1 -0.3962 -1.8449 2.1223 42 1 -0.1999 -4.2365 1.4974 43 1 -0.6279 -4.0583 3.2161 44 1 1.0422 -4.4624 2.7522 45 1 1.8778 -2.4982 4.0507 46 1 1.2311 -0.8730 3.7210 47 1 0.2073 -2.0937 4.5143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453047240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:56 Heat of formation + Delta-G solvation = 26.888709 kcal Electronic energy + Delta-G solvation = -22618.797746 eV Core-core repulsion = 19608.585665 eV Total energy + Delta-G solvation = -3010.212082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95593 -36.72020 -35.19005 -34.51444 -33.55393 -32.02440 -29.14889 -27.51497 -27.06310 -26.08888 -25.35286 -23.08077 -21.48295 -21.30613 -20.04392 -19.07181 -16.90210 -16.80586 -16.00273 -15.66962 -14.82620 -14.55842 -14.34805 -13.90986 -13.58819 -13.41260 -13.24975 -13.14439 -12.91329 -12.68235 -12.46082 -12.39366 -12.22836 -12.08327 -11.96158 -11.63414 -11.48887 -11.30539 -11.27147 -11.14136 -10.96103 -10.86823 -10.64921 -10.56629 -10.48515 -10.38892 -9.97164 -9.82741 -9.63853 -9.31707 -8.72723 -8.61771 -6.10965 -4.11473 3.24775 3.33951 3.34943 3.71150 3.79348 4.01617 4.27223 4.37776 4.49232 4.79025 4.82978 4.91916 5.00231 5.10164 5.13784 5.20990 5.23689 5.27302 5.36248 5.46575 5.48581 5.58321 5.60485 5.65831 5.69619 5.69914 5.75624 5.84392 5.85594 5.91525 5.93989 6.00443 6.04289 6.09908 6.12775 6.21932 6.28395 6.29596 6.40757 6.51608 6.58439 6.91525 7.12642 7.17888 7.63546 8.40621 8.56123 8.92840 9.48935 11.02217 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004425 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.486402 B = 6325.760090 C = 6683.271122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.108 4.108 5 H 0.103 0.897 6 C 0.000 4.000 7 N -0.463 5.463 8 C 0.025 3.975 9 C 0.024 3.976 10 H 0.103 0.897 11 C 0.253 3.747 12 N -0.471 5.471 13 C -0.005 4.005 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.037 3.963 23 H 0.076 0.924 24 C -0.076 4.076 25 C -0.149 4.149 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.693 12.748 -3.785 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.126 4.126 5 H 0.121 0.879 6 C -0.129 4.129 7 N -0.185 5.185 8 C -0.105 4.105 9 C 0.002 3.998 10 H 0.121 0.879 11 C -0.064 4.064 12 N -0.147 5.147 13 C -0.044 4.044 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.072 4.072 23 H 0.094 0.906 24 C -0.095 4.095 25 C -0.206 4.206 26 C -0.195 4.195 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.177 12.330 -1.403 22.842 hybrid contribution -0.296 -0.873 -1.934 2.142 sum -19.472 11.458 -3.337 22.838 Atomic orbital electron populations 1.21822 0.95237 1.01772 1.01433 1.21086 0.95734 0.96307 0.97373 1.21798 1.01291 0.95718 1.01439 1.22972 0.95941 0.94913 0.98816 0.87932 1.23859 0.97501 0.93414 0.98103 1.68978 1.03374 1.01422 1.44694 1.22831 0.95418 0.94070 0.98154 1.18874 0.94742 1.03010 0.83208 0.87911 1.28687 0.91530 0.91719 0.94506 1.80991 1.10018 1.10227 1.13487 1.19640 0.97812 0.91566 0.95372 1.21025 0.90319 1.11691 1.33462 0.90814 1.24990 0.94675 0.97503 0.95894 1.69907 1.06742 1.31977 1.44871 0.86826 0.80445 0.81422 0.80932 1.20063 1.21272 1.18883 1.23499 0.91515 0.95122 0.97053 0.90579 1.20953 0.96602 0.96346 0.95605 1.21854 1.01559 0.96148 1.01050 1.21726 1.01382 1.01098 0.95253 0.92735 0.93023 0.92539 0.91219 0.92452 0.92968 0.92797 0.89779 0.90914 0.90121 0.92423 0.95727 0.95089 0.92569 0.91300 0.93179 0.93039 0.92193 0.91084 0.93104 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.80 37.16 0.33 -0.71 16 2 C -0.09 -0.68 2.73 -90.62 -0.25 -0.92 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.73 16 4 C -0.11 -0.99 2.79 -90.09 -0.25 -1.25 16 5 H 0.10 1.00 6.29 -51.92 -0.33 0.67 16 6 C 0.00 0.00 6.51 -7.53 -0.05 -0.05 16 7 N -0.46 -5.85 4.69 -236.44 -1.11 -6.96 16 8 C 0.02 0.35 4.18 -3.83 -0.02 0.33 16 9 C 0.02 0.43 2.26 -93.40 -0.21 0.22 16 10 H 0.10 1.79 7.55 -51.94 -0.39 1.40 16 11 C 0.25 5.33 13.67 -20.76 -0.28 5.04 16 12 N -0.47 -10.86 18.54 42.15 0.78 -10.08 16 13 C 0.00 -0.11 3.49 -27.88 -0.10 -0.20 16 14 C -0.53 -14.32 9.15 -34.44 -0.32 -14.63 16 15 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 16 C 0.07 2.02 5.47 -17.81 -0.10 1.92 16 17 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 18 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 22 C 0.04 0.38 1.51 -71.43 -0.11 0.27 16 23 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 24 C -0.08 -0.76 3.06 -90.62 -0.28 -1.03 16 25 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16 26 C -0.14 -1.52 8.60 37.16 0.32 -1.21 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 7.04 -51.93 -0.37 0.05 16 30 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 36 H 0.08 1.17 7.10 -51.93 -0.37 0.80 16 37 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 38 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 39 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 45 H 0.07 0.98 7.46 -51.93 -0.39 0.60 16 46 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -30.56 367.27 -7.98 -38.54 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.67 Total: -2.55 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.62 Total: -14.15 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.45 Total: -43.45 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.56 -7.98 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453047240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds