Wall clock time and date at job start Tue Mar 31 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46596 * 119.99531 * 2 1 3 5 5 H 1.09007 * 113.38497 * 286.92034 * 4 2 1 6 6 C 1.53514 * 114.16678 * 153.84419 * 4 2 1 7 7 N 1.47489 * 87.93155 * 220.32724 * 6 4 2 8 8 C 1.46891 * 110.99995 * 138.70278 * 7 6 4 9 9 C 1.53001 * 109.47199 * 74.02912 * 8 7 6 10 10 H 1.08989 * 109.47152 * 304.99693 * 9 8 7 11 11 C 1.47202 * 109.47149 * 65.00269 * 9 8 7 12 12 N 6.97914 * 121.77041 * 135.47438 * 2 1 3 13 13 C 1.53006 * 109.46868 * 184.99750 * 9 8 7 14 14 C 1.50698 * 109.46547 * 175.00162 * 13 9 8 15 15 H 1.07994 * 120.00583 * 0.02562 * 14 13 9 16 16 C 1.37888 * 119.99525 * 180.02562 * 14 13 9 17 17 N 1.31519 * 119.99725 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00143 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46949 * 89.99835 * 18 16 14 20 20 H 1.48500 * 109.46934 * 209.99990 * 18 16 14 21 21 H 1.48499 * 109.46911 * 330.00006 * 18 16 14 22 22 C 1.47483 * 87.83376 * 27.00654 * 7 6 4 23 23 H 1.09001 * 113.47024 * 87.81919 * 22 7 6 24 24 C 1.52999 * 113.47896 * 218.21877 * 22 7 6 25 25 C 1.52997 * 109.47317 * 280.50147 * 24 22 7 26 26 C 1.53006 * 109.46623 * 40.49966 * 24 22 7 27 27 H 1.09003 * 109.47185 * 300.00412 * 1 2 3 28 28 H 1.08997 * 109.46944 * 60.00335 * 1 2 3 29 29 H 1.09000 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47503 * 239.99483 * 2 1 3 31 31 H 1.08991 * 109.47386 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46541 * 299.99543 * 3 2 1 33 33 H 1.08995 * 109.47304 * 59.99360 * 3 2 1 34 34 H 1.08995 * 113.47606 * 105.56354 * 6 4 2 35 35 H 1.08994 * 113.47580 * 335.08958 * 6 4 2 36 36 H 1.09001 * 109.47225 * 194.02941 * 8 7 6 37 37 H 1.09003 * 109.47273 * 314.03019 * 8 7 6 38 38 H 1.08996 * 109.47531 * 295.00060 * 13 9 8 39 39 H 1.09001 * 109.46925 * 55.00641 * 13 9 8 40 40 H 0.96996 * 119.99872 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.46929 * 160.49250 * 24 22 7 42 42 H 1.09002 * 109.47153 * 299.99641 * 25 24 22 43 43 H 1.09001 * 109.46832 * 179.97438 * 25 24 22 44 44 H 1.09004 * 109.47261 * 59.99813 * 25 24 22 45 45 H 1.08993 * 109.46955 * 300.00075 * 26 24 22 46 46 H 1.09000 * 109.47050 * 59.99904 * 26 24 22 47 47 H 1.09001 * 109.47002 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.9095 -0.1446 2.1652 6 6 3.4347 -1.3427 1.0910 7 7 2.9422 -2.5091 1.8475 8 6 3.4288 -3.7630 1.2572 9 6 4.9127 -3.9392 1.5855 10 1 5.4650 -3.0600 1.2542 11 6 5.0775 -4.1035 3.0390 12 7 5.2047 -4.2302 4.1607 13 6 5.4500 -5.1792 0.8680 14 6 6.9366 -5.2840 1.0914 15 1 7.4471 -4.5409 1.6859 16 6 7.6451 -6.3288 0.5366 17 7 8.9427 -6.4200 0.7311 18 14 6.7623 -7.6138 -0.4924 19 1 6.7557 -7.1893 -1.9154 20 1 7.4650 -8.9160 -0.3675 21 1 5.3645 -7.7575 -0.0121 22 6 1.5892 -2.1845 1.3584 23 1 1.3544 -2.6404 0.3965 24 6 0.4935 -2.4088 2.4025 25 6 0.1524 -3.8986 2.4720 26 6 0.9880 -1.9344 3.7705 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 4.2180 -0.7889 1.6084 35 1 3.6926 -1.5730 0.0574 36 1 2.8641 -4.6006 1.6667 37 1 3.2973 -3.7305 0.1756 38 1 4.9596 -6.0688 1.2632 39 1 5.2479 -5.0971 -0.2000 40 1 9.4410 -7.1551 0.3412 41 1 -0.3962 -1.8449 2.1223 42 1 -0.1999 -4.2365 1.4974 43 1 -0.6279 -4.0583 3.2161 44 1 1.0422 -4.4624 2.7522 45 1 1.8778 -2.4982 4.0507 46 1 1.2311 -0.8730 3.7210 47 1 0.2073 -2.0937 4.5143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453047240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:56 Heat of formation + Delta-G solvation = 9.386897 kcal Electronic energy + Delta-G solvation = -22619.556682 eV Core-core repulsion = 19608.585665 eV Total energy + Delta-G solvation = -3010.971017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82569 -38.25178 -36.06914 -35.66895 -35.11789 -33.75967 -30.49892 -28.13976 -27.98234 -27.44722 -26.18332 -24.19710 -23.29511 -22.22192 -20.75673 -19.89420 -18.91624 -18.30998 -16.98988 -16.61530 -16.13494 -15.79368 -15.31594 -15.14275 -14.95611 -14.50579 -14.29371 -14.17583 -14.02140 -13.90650 -13.79263 -13.46800 -13.22558 -13.18445 -13.06253 -12.92406 -12.84574 -12.45769 -12.37372 -12.21235 -12.01713 -11.94598 -11.76840 -11.70401 -11.67812 -11.44203 -11.31029 -11.28495 -10.89496 -10.74517 -10.68901 -9.62334 -8.26214 -6.32104 1.40468 1.44061 1.54256 2.02413 2.09677 2.39561 3.06523 3.11316 3.30254 3.50732 3.74072 3.97581 4.14309 4.22816 4.27445 4.28344 4.33329 4.44613 4.53842 4.56220 4.65002 4.68743 4.72873 4.81329 4.88048 4.92642 4.94066 4.98391 5.00107 5.10055 5.13122 5.15146 5.16414 5.20481 5.28351 5.35808 5.39492 5.40150 5.49381 5.54042 5.58874 5.63034 5.68182 5.70222 6.21128 6.29872 6.74952 6.87663 7.32382 8.90889 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004425 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.486402 B = 6325.760090 C = 6683.271122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.097 0.903 6 C -0.005 4.005 7 N -0.485 5.485 8 C 0.036 3.964 9 C 0.029 3.971 10 H 0.108 0.892 11 C 0.262 3.738 12 N -0.514 5.514 13 C -0.001 4.001 14 C -0.532 4.532 15 H 0.026 0.974 16 C 0.004 3.996 17 N -0.954 5.954 18 Si 0.949 3.051 19 H -0.255 1.255 20 H -0.294 1.294 21 H -0.239 1.239 22 C 0.042 3.958 23 H 0.089 0.911 24 C -0.073 4.073 25 C -0.147 4.147 26 C -0.133 4.133 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.265 0.735 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.853 12.965 -6.050 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.202 4.202 4 C -0.112 4.112 5 H 0.115 0.885 6 C -0.134 4.134 7 N -0.207 5.207 8 C -0.094 4.094 9 C 0.007 3.993 10 H 0.126 0.874 11 C -0.054 4.054 12 N -0.192 5.192 13 C -0.040 4.040 14 C -0.570 4.570 15 H 0.045 0.955 16 C -0.192 4.192 17 N -0.594 5.594 18 Si 0.771 3.229 19 H -0.179 1.179 20 H -0.221 1.221 21 H -0.162 1.162 22 C -0.066 4.066 23 H 0.107 0.893 24 C -0.092 4.092 25 C -0.204 4.204 26 C -0.190 4.190 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.365 12.574 -3.666 25.918 hybrid contribution 0.754 -0.845 -1.140 1.607 sum -21.611 11.730 -4.806 25.054 Atomic orbital electron populations 1.21805 0.94374 1.02041 1.01854 1.21053 0.96364 0.96185 0.96432 1.21794 1.00902 0.95659 1.01866 1.22852 0.94459 0.94528 0.99371 0.88521 1.23939 0.98231 0.92967 0.98232 1.68991 1.05137 1.01098 1.45487 1.22712 0.91948 0.95009 0.99723 1.18970 0.97933 1.01659 0.80712 0.87381 1.29411 0.90159 0.90556 0.95272 1.80979 1.11667 1.11521 1.15008 1.19580 0.93865 0.93100 0.97501 1.21374 0.93324 1.10304 1.31985 0.95514 1.26039 0.95328 1.00273 0.97590 1.70091 1.09006 1.33276 1.47038 0.85682 0.79981 0.77440 0.79749 1.17945 1.22068 1.16234 1.23548 0.90164 0.95481 0.97446 0.89288 1.20967 0.97179 0.96352 0.94681 1.21836 1.00649 0.96033 1.01912 1.21665 1.00155 1.00812 0.96396 0.92682 0.92319 0.92310 0.91007 0.93091 0.92180 0.92771 0.91073 0.89860 0.90330 0.89760 0.95663 0.92030 0.92609 0.89326 0.91824 0.92596 0.94501 0.94285 0.92736 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.80 71.98 0.63 -0.94 16 2 C -0.08 -1.04 2.73 -10.79 -0.03 -1.07 16 3 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 4 C -0.09 -1.51 2.79 -10.45 -0.03 -1.54 16 5 H 0.10 1.71 6.29 -2.38 -0.01 1.70 16 6 C -0.01 -0.10 6.51 83.58 0.54 0.44 16 7 N -0.48 -11.48 4.69 -901.96 -4.23 -15.71 16 8 C 0.04 0.92 4.18 86.31 0.36 1.28 16 9 C 0.03 1.02 2.26 -12.60 -0.03 0.99 16 10 H 0.11 3.71 7.55 -2.39 -0.02 3.69 16 11 C 0.26 11.21 13.67 89.44 1.22 12.43 16 12 N -0.51 -24.41 18.54 20.01 0.37 -24.04 16 13 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 14 C -0.53 -29.24 9.15 25.60 0.23 -29.00 16 15 H 0.03 1.67 7.84 -2.91 -0.02 1.64 16 16 C 0.00 0.25 5.47 84.66 0.46 0.71 16 17 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 18 Si 0.95 41.79 27.47 68.60 1.88 43.67 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 22 C 0.04 0.75 1.51 42.19 0.06 0.81 16 23 H 0.09 1.40 7.73 -2.39 -0.02 1.38 16 24 C -0.07 -1.27 3.06 -10.79 -0.03 -1.31 16 25 C -0.15 -2.71 9.19 71.98 0.66 -2.05 16 26 C -0.13 -2.81 8.60 71.98 0.62 -2.19 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.63 7.04 -2.39 -0.02 0.61 16 30 H 0.07 0.93 7.90 -2.39 -0.02 0.91 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.52 7.49 -2.39 -0.02 1.50 16 36 H 0.08 2.09 7.10 -2.39 -0.02 2.07 16 37 H 0.08 1.75 7.56 -2.39 -0.02 1.73 16 38 H 0.03 1.05 7.20 -2.39 -0.02 1.04 16 39 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.09 1.25 7.49 -2.39 -0.02 1.23 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.04 0.85 7.11 -2.38 -0.02 0.83 16 45 H 0.04 1.08 7.46 -2.39 -0.02 1.06 16 46 H 0.05 1.09 6.36 -2.39 -0.02 1.07 16 47 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.62 367.27 4.62 -64.00 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.85 Total: 13.86 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 5.45 Total: -22.56 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -3.56 Total: -98.97 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.67 kcal Total: -68.62 4.62 -64.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453047240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.384 kcal (2) G-P(sol) polarization free energy of solvation -68.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds