Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 C 1.52999 * 109.47477 * 119.99759 * 2 1 3 5 5 H 1.08998 * 113.00878 * 288.36754 * 4 2 1 6 6 C 1.53932 * 113.73718 * 156.72689 * 4 2 1 7 7 N 1.47962 * 86.18337 * 221.92095 * 6 4 2 8 8 C 1.46899 * 110.99738 * 137.57834 * 7 6 4 9 9 C 1.53011 * 109.46852 * 70.64426 * 8 7 6 10 10 H 1.08998 * 109.46503 * 54.99745 * 9 8 7 11 11 C 1.47203 * 109.47068 * 294.99759 * 9 8 7 12 12 N 5.10072 * 157.90431 * 170.81313 * 2 1 3 13 13 C 1.52998 * 109.46984 * 174.99505 * 9 8 7 14 14 C 1.50698 * 109.46845 * 184.99883 * 13 9 8 15 15 H 1.07996 * 120.00284 * 0.02562 * 14 13 9 16 16 C 1.37881 * 119.99620 * 180.02562 * 14 13 9 17 17 N 1.31507 * 120.00376 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47156 * 59.99858 * 18 16 14 20 20 H 1.48501 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47201 * 300.00019 * 18 16 14 22 22 C 1.47964 * 90.75976 * 24.69327 * 7 6 4 23 23 H 1.08996 * 113.86159 * 89.64107 * 22 7 6 24 24 C 1.53006 * 113.75329 * 220.99108 * 22 7 6 25 25 C 1.52997 * 109.47127 * 276.55763 * 24 22 7 26 26 C 1.52992 * 109.47223 * 36.56269 * 24 22 7 27 27 H 1.08999 * 109.47357 * 299.99855 * 1 2 3 28 28 H 1.08993 * 109.47292 * 60.00445 * 1 2 3 29 29 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47357 * 240.00144 * 2 1 3 31 31 H 1.09006 * 109.46928 * 299.99648 * 3 2 1 32 32 H 1.08992 * 109.47298 * 59.99999 * 3 2 1 33 33 H 1.08998 * 109.47108 * 180.02562 * 3 2 1 34 34 H 1.09001 * 113.75643 * 336.24604 * 6 4 2 35 35 H 1.09005 * 113.75976 * 107.60205 * 6 4 2 36 36 H 1.08991 * 109.47161 * 190.64091 * 8 7 6 37 37 H 1.09001 * 109.47598 * 310.64297 * 8 7 6 38 38 H 1.08991 * 109.47455 * 305.00264 * 13 9 8 39 39 H 1.09000 * 109.46896 * 65.00292 * 13 9 8 40 40 H 0.96997 * 120.00639 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.46505 * 156.55634 * 24 22 7 42 42 H 1.09002 * 109.47153 * 180.02562 * 25 24 22 43 43 H 1.09001 * 109.46832 * 60.00321 * 25 24 22 44 44 H 1.09004 * 109.47261 * 300.00303 * 25 24 22 45 45 H 1.09001 * 109.47066 * 299.99881 * 26 24 22 46 46 H 1.08996 * 109.47747 * 59.99547 * 26 24 22 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8841 -0.1501 2.1644 6 6 3.4670 -1.2797 1.1031 7 7 2.9606 -2.4840 1.7976 8 6 3.4683 -3.7089 1.1653 9 6 4.9647 -3.8485 1.4526 10 1 5.1327 -3.8131 2.5290 11 6 5.6936 -2.7454 0.8056 12 7 6.2561 -1.8940 0.3063 13 6 5.4673 -5.1844 0.9016 14 6 6.9103 -5.3774 1.2910 15 1 7.4179 -4.6230 1.8736 16 6 7.5823 -6.5173 0.9034 17 7 6.9640 -7.4362 0.1944 18 14 9.3707 -6.7569 1.3867 19 1 9.4877 -6.7573 2.8672 20 1 9.8586 -8.0534 0.8518 21 1 10.1875 -5.6507 0.8260 22 6 1.5823 -2.1876 1.3483 23 1 1.3263 -2.6337 0.3873 24 6 0.5188 -2.4302 2.4212 25 6 0.1370 -3.9118 2.4350 26 6 1.0756 -2.0342 3.7901 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1299 1.4425 -0.0005 34 1 3.7641 -1.4607 0.0700 35 1 4.2153 -0.7270 1.6713 36 1 2.9389 -4.5721 1.5683 37 1 3.3086 -3.6550 0.0884 38 1 4.8680 -5.9961 1.3138 39 1 5.3811 -5.1847 -0.1850 40 1 7.4367 -8.2382 -0.0779 41 1 -0.3636 -1.8297 2.2003 42 1 -0.6210 -4.0845 3.1990 43 1 1.0195 -4.5123 2.6559 44 1 -0.2597 -4.1939 1.4597 45 1 1.9581 -2.6347 4.0109 46 1 1.3476 -0.9788 3.7803 47 1 0.3177 -2.2067 4.5543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453047241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = 22.955368 kcal Electronic energy + Delta-G solvation = -22656.143511 eV Core-core repulsion = 19645.760867 eV Total energy + Delta-G solvation = -3010.382644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74783 -36.73352 -35.15358 -34.32181 -33.64382 -31.93920 -28.70369 -27.48489 -26.98636 -25.83061 -25.33197 -23.04970 -21.87199 -21.12122 -19.96959 -19.01686 -16.80602 -16.43268 -15.82696 -15.59137 -14.88294 -14.61897 -14.34114 -13.93803 -13.52730 -13.30414 -13.19392 -12.91414 -12.77067 -12.66996 -12.43586 -12.29444 -12.17495 -11.99243 -11.94824 -11.58903 -11.25105 -11.23816 -11.14488 -11.01745 -10.93228 -10.76026 -10.70533 -10.54430 -10.47961 -10.22990 -10.18004 -9.93469 -9.45685 -9.18980 -8.57734 -8.44578 -6.08953 -4.12138 3.31528 3.35550 3.39315 3.60270 3.65667 4.02251 4.37291 4.42152 4.53551 4.83706 4.89200 4.96933 5.06416 5.15510 5.21639 5.28825 5.31402 5.35015 5.44558 5.52335 5.55833 5.63624 5.71027 5.71812 5.75576 5.76447 5.80767 5.92839 5.96034 5.98897 6.04052 6.09402 6.13014 6.17241 6.18192 6.34813 6.40309 6.46350 6.55674 6.56292 6.64108 7.25210 7.43966 7.53534 7.85857 8.23883 8.44077 8.92139 9.53231 11.01918 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.004257 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.457999 B = 6576.529709 C = 7293.913946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.107 4.107 5 H 0.099 0.901 6 C 0.005 3.995 7 N -0.469 5.469 8 C 0.030 3.970 9 C 0.009 3.991 10 H 0.108 0.892 11 C 0.246 3.754 12 N -0.479 5.479 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.041 3.959 23 H 0.076 0.924 24 C -0.074 4.074 25 C -0.148 4.148 26 C -0.136 4.136 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.512 11.469 3.047 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.126 4.126 5 H 0.117 0.883 6 C -0.124 4.124 7 N -0.191 5.191 8 C -0.099 4.099 9 C -0.013 4.013 10 H 0.126 0.874 11 C -0.070 4.070 12 N -0.156 5.156 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.068 4.068 23 H 0.094 0.906 24 C -0.093 4.093 25 C -0.206 4.206 26 C -0.193 4.193 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.481 12.448 2.905 20.076 hybrid contribution 0.863 -0.670 -0.585 1.239 sum -14.619 11.778 2.321 18.916 Atomic orbital electron populations 1.21810 0.95154 1.01777 1.01395 1.21135 0.95764 0.96335 0.97623 1.21793 1.01302 0.95749 1.01373 1.23216 0.95545 0.95205 0.98633 0.88280 1.24012 0.96764 0.93093 0.98490 1.68564 1.02808 1.01272 1.46427 1.22751 0.95010 0.94585 0.97558 1.19250 0.90147 0.91396 1.00480 0.87409 1.29181 0.92450 0.92701 0.92666 1.81020 1.10453 1.13426 1.10684 1.19150 0.96600 0.87968 0.96818 1.21105 0.96201 1.04501 1.34638 0.92610 1.24943 0.98212 0.95871 0.94856 1.69923 1.36905 1.09180 1.37061 0.86662 0.85088 0.77370 0.79013 1.20009 1.21176 1.20271 1.23568 0.91186 0.94907 0.97173 0.90577 1.20911 0.96451 0.96603 0.95317 1.21853 1.01535 0.96102 1.01090 1.21708 1.01185 1.01450 0.94999 0.92729 0.93047 0.92500 0.91434 0.92978 0.92774 0.92567 0.91315 0.89849 0.88857 0.93954 0.94327 0.95882 0.92751 0.91354 0.93015 0.91935 0.93194 0.90872 0.93227 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.93 37.16 0.33 -0.87 16 2 C -0.09 -0.88 2.68 -90.62 -0.24 -1.13 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 4 C -0.11 -1.16 2.67 -89.69 -0.24 -1.40 16 5 H 0.10 1.06 6.43 -51.93 -0.33 0.73 16 6 C 0.01 0.07 5.15 -2.77 -0.01 0.06 16 7 N -0.47 -6.28 4.76 -230.33 -1.10 -7.37 16 8 C 0.03 0.46 4.51 -3.82 -0.02 0.44 16 9 C 0.01 0.17 2.42 -93.40 -0.23 -0.05 16 10 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 11 C 0.25 5.04 10.79 -20.76 -0.22 4.82 16 12 N -0.48 -10.40 18.01 42.15 0.76 -9.64 16 13 C 0.03 0.78 4.42 -27.89 -0.12 0.66 16 14 C -0.53 -14.16 8.60 -34.44 -0.30 -14.45 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.04 0.45 1.72 -66.65 -0.11 0.34 16 23 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 24 C -0.07 -0.73 3.08 -90.62 -0.28 -1.01 16 25 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 26 C -0.14 -1.40 8.57 37.15 0.32 -1.08 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 7.21 -51.93 -0.37 0.10 16 30 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.06 6.56 -51.93 -0.34 0.72 16 35 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.09 1.34 7.41 -51.93 -0.39 0.95 16 37 H 0.04 0.65 7.69 -51.93 -0.40 0.26 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.69 7.41 -51.93 -0.39 0.31 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 46 H 0.05 0.50 6.48 -51.93 -0.34 0.17 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -28.54 367.84 -8.38 -36.92 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -8.76 Total: -2.77 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.54 Total: -14.16 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.40 Total: -41.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.54 -8.38 -36.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453047241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.871 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds