Wall clock time and date at job start Tue Mar 31 2020 00:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 C 1.52999 * 109.47477 * 119.99759 * 2 1 3 5 5 H 1.08998 * 113.00878 * 288.36754 * 4 2 1 6 6 C 1.53932 * 113.73718 * 156.72689 * 4 2 1 7 7 N 1.47962 * 86.18337 * 221.92095 * 6 4 2 8 8 C 1.46899 * 110.99738 * 137.57834 * 7 6 4 9 9 C 1.53011 * 109.46852 * 70.64426 * 8 7 6 10 10 H 1.08998 * 109.46503 * 54.99745 * 9 8 7 11 11 C 1.47203 * 109.47068 * 294.99759 * 9 8 7 12 12 N 5.10072 * 157.90431 * 170.81313 * 2 1 3 13 13 C 1.52998 * 109.46984 * 174.99505 * 9 8 7 14 14 C 1.50698 * 109.46845 * 184.99883 * 13 9 8 15 15 H 1.07996 * 120.00284 * 0.02562 * 14 13 9 16 16 C 1.37881 * 119.99620 * 180.02562 * 14 13 9 17 17 N 1.31507 * 120.00376 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47156 * 59.99858 * 18 16 14 20 20 H 1.48501 * 109.46965 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47201 * 300.00019 * 18 16 14 22 22 C 1.47964 * 90.75976 * 24.69327 * 7 6 4 23 23 H 1.08996 * 113.86159 * 89.64107 * 22 7 6 24 24 C 1.53006 * 113.75329 * 220.99108 * 22 7 6 25 25 C 1.52997 * 109.47127 * 276.55763 * 24 22 7 26 26 C 1.52992 * 109.47223 * 36.56269 * 24 22 7 27 27 H 1.08999 * 109.47357 * 299.99855 * 1 2 3 28 28 H 1.08993 * 109.47292 * 60.00445 * 1 2 3 29 29 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47357 * 240.00144 * 2 1 3 31 31 H 1.09006 * 109.46928 * 299.99648 * 3 2 1 32 32 H 1.08992 * 109.47298 * 59.99999 * 3 2 1 33 33 H 1.08998 * 109.47108 * 180.02562 * 3 2 1 34 34 H 1.09001 * 113.75643 * 336.24604 * 6 4 2 35 35 H 1.09005 * 113.75976 * 107.60205 * 6 4 2 36 36 H 1.08991 * 109.47161 * 190.64091 * 8 7 6 37 37 H 1.09001 * 109.47598 * 310.64297 * 8 7 6 38 38 H 1.08991 * 109.47455 * 305.00264 * 13 9 8 39 39 H 1.09000 * 109.46896 * 65.00292 * 13 9 8 40 40 H 0.96997 * 120.00639 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.46505 * 156.55634 * 24 22 7 42 42 H 1.09002 * 109.47153 * 180.02562 * 25 24 22 43 43 H 1.09001 * 109.46832 * 60.00321 * 25 24 22 44 44 H 1.09004 * 109.47261 * 300.00303 * 25 24 22 45 45 H 1.09001 * 109.47066 * 299.99881 * 26 24 22 46 46 H 1.08996 * 109.47747 * 59.99547 * 26 24 22 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8841 -0.1501 2.1644 6 6 3.4670 -1.2797 1.1031 7 7 2.9606 -2.4840 1.7976 8 6 3.4683 -3.7089 1.1653 9 6 4.9647 -3.8485 1.4526 10 1 5.1327 -3.8131 2.5290 11 6 5.6936 -2.7454 0.8056 12 7 6.2561 -1.8940 0.3063 13 6 5.4673 -5.1844 0.9016 14 6 6.9103 -5.3774 1.2910 15 1 7.4179 -4.6230 1.8736 16 6 7.5823 -6.5173 0.9034 17 7 6.9640 -7.4362 0.1944 18 14 9.3707 -6.7569 1.3867 19 1 9.4877 -6.7573 2.8672 20 1 9.8586 -8.0534 0.8518 21 1 10.1875 -5.6507 0.8260 22 6 1.5823 -2.1876 1.3483 23 1 1.3263 -2.6337 0.3873 24 6 0.5188 -2.4302 2.4212 25 6 0.1370 -3.9118 2.4350 26 6 1.0756 -2.0342 3.7901 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1299 1.4425 -0.0005 34 1 3.7641 -1.4607 0.0700 35 1 4.2153 -0.7270 1.6713 36 1 2.9389 -4.5721 1.5683 37 1 3.3086 -3.6550 0.0884 38 1 4.8680 -5.9961 1.3138 39 1 5.3811 -5.1847 -0.1850 40 1 7.4367 -8.2382 -0.0779 41 1 -0.3636 -1.8297 2.2003 42 1 -0.6210 -4.0845 3.1990 43 1 1.0195 -4.5123 2.6559 44 1 -0.2597 -4.1939 1.4597 45 1 1.9581 -2.6347 4.0109 46 1 1.3476 -0.9788 3.7803 47 1 0.3177 -2.2067 4.5543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453047241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:58 Heat of formation + Delta-G solvation = 8.362225 kcal Electronic energy + Delta-G solvation = -22656.776317 eV Core-core repulsion = 19645.760867 eV Total energy + Delta-G solvation = -3011.015450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78336 -38.28399 -36.11294 -35.64375 -35.15266 -33.65043 -30.13827 -28.23322 -27.84967 -27.33965 -26.36197 -24.35772 -23.60153 -22.20363 -20.83469 -19.96071 -18.54582 -18.23129 -16.87410 -16.78018 -16.41442 -15.92763 -15.33161 -15.03780 -14.84119 -14.47649 -14.29058 -14.18001 -13.94562 -13.93467 -13.80610 -13.54823 -13.37800 -13.07138 -12.98050 -12.88495 -12.80658 -12.53441 -12.38266 -12.32529 -12.18245 -12.02897 -11.92152 -11.70712 -11.64181 -11.42593 -11.35063 -11.29370 -10.86220 -10.79958 -10.57136 -9.67293 -8.21326 -6.30113 1.39554 1.40716 1.48228 1.93649 1.96786 2.39742 2.95272 3.13383 3.23469 3.44781 3.64072 3.99387 4.12317 4.14539 4.23535 4.26501 4.34388 4.40500 4.43079 4.48536 4.63551 4.70328 4.74990 4.79002 4.85897 4.87411 4.94613 4.96283 5.00928 5.05440 5.05786 5.18495 5.22459 5.29101 5.30256 5.34471 5.43026 5.44982 5.52311 5.55684 5.58161 5.63378 5.76424 5.76847 6.11238 6.20732 6.74211 6.84411 7.38478 8.89458 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.004257 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.457999 B = 6576.529709 C = 7293.913946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.091 4.091 5 H 0.107 0.893 6 C 0.001 3.999 7 N -0.469 5.469 8 C 0.041 3.959 9 C 0.020 3.980 10 H 0.117 0.883 11 C 0.254 3.746 12 N -0.502 5.502 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.046 3.954 23 H 0.076 0.924 24 C -0.069 4.069 25 C -0.148 4.148 26 C -0.134 4.134 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.034 0.966 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.971 12.186 3.932 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.110 4.110 5 H 0.125 0.875 6 C -0.129 4.129 7 N -0.191 5.191 8 C -0.088 4.088 9 C -0.001 4.001 10 H 0.134 0.866 11 C -0.062 4.062 12 N -0.179 5.179 13 C 0.002 3.998 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.207 1.207 22 C -0.063 4.063 23 H 0.094 0.906 24 C -0.088 4.088 25 C -0.205 4.205 26 C -0.191 4.191 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.948 13.171 3.800 21.798 hybrid contribution 1.310 -0.872 -0.868 1.797 sum -15.637 12.299 2.932 20.110 Atomic orbital electron populations 1.21772 0.93444 1.02202 1.02267 1.21114 0.97117 0.96222 0.96300 1.21780 1.00233 0.95675 1.02367 1.23133 0.93039 0.95296 0.99521 0.87508 1.23915 0.98227 0.93717 0.97002 1.68586 1.04300 1.00163 1.46096 1.22605 0.92506 0.96140 0.97563 1.19140 0.92217 0.88458 1.00325 0.86576 1.29479 0.91930 0.92631 0.92181 1.81009 1.11299 1.14227 1.11379 1.18960 0.95265 0.90301 0.95255 1.21498 0.97881 1.04298 1.34241 0.92976 1.25705 1.02074 0.95826 0.94978 1.70018 1.38432 1.09674 1.38129 0.85751 0.80401 0.77193 0.79262 1.18768 1.20522 1.20672 1.23632 0.90177 0.94786 0.97720 0.90560 1.20920 0.96407 0.97019 0.94444 1.21845 1.01194 0.95703 1.01781 1.21672 1.00759 1.01093 0.95571 0.91744 0.92333 0.92286 0.92845 0.92081 0.91704 0.94232 0.93255 0.91470 0.87666 0.94375 0.94734 0.98343 0.92637 0.89464 0.91881 0.93488 0.92710 0.92808 0.93120 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.93 71.98 0.64 -1.32 16 2 C -0.09 -1.61 2.68 -10.79 -0.03 -1.64 16 3 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 4 C -0.09 -1.86 2.67 -10.15 -0.03 -1.89 16 5 H 0.11 2.07 6.43 -2.39 -0.02 2.05 16 6 C 0.00 0.01 5.15 86.40 0.45 0.46 16 7 N -0.47 -12.26 4.76 -882.64 -4.20 -16.46 16 8 C 0.04 1.25 4.51 86.31 0.39 1.64 16 9 C 0.02 0.77 2.42 -12.60 -0.03 0.74 16 10 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 11 C 0.25 10.52 10.79 89.44 0.96 11.49 16 12 N -0.50 -22.14 18.01 20.01 0.36 -21.78 16 13 C 0.04 1.95 4.42 29.85 0.13 2.08 16 14 C -0.54 -29.31 8.60 25.60 0.22 -29.09 16 15 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 16 C 0.01 0.74 5.46 84.66 0.46 1.20 16 17 N -0.92 -53.58 13.29 21.45 0.28 -53.30 16 18 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 C 0.05 0.94 1.72 45.02 0.08 1.02 16 23 H 0.08 1.63 7.72 -2.39 -0.02 1.61 16 24 C -0.07 -1.19 3.08 -10.79 -0.03 -1.22 16 25 C -0.15 -2.58 9.19 71.98 0.66 -1.92 16 26 C -0.13 -2.46 8.57 71.98 0.62 -1.84 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.81 7.21 -2.39 -0.02 0.79 16 30 H 0.05 1.13 7.94 -2.39 -0.02 1.11 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 1.56 6.56 -2.39 -0.02 1.54 16 35 H 0.07 2.06 7.93 -2.38 -0.02 2.04 16 36 H 0.11 2.94 7.41 -2.39 -0.02 2.92 16 37 H 0.04 1.18 7.69 -2.39 -0.02 1.16 16 38 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.09 1.24 7.85 -2.39 -0.02 1.22 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.96 7.41 -2.39 -0.02 0.95 16 44 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 46 H 0.05 0.91 6.48 -2.39 -0.02 0.90 16 47 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -60.74 367.84 4.53 -56.22 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.90 Total: 11.48 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.15 Total: -22.13 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -3.56 Total: -91.54 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.74 4.53 -56.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453047241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.579 kcal (2) G-P(sol) polarization free energy of solvation -60.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds