Wall clock time and date at job start Tue Mar 31 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47186 * 2 1 4 4 C 1.53001 * 109.47093 * 120.00063 * 2 1 3 5 5 H 1.09008 * 109.47028 * 299.99819 * 4 2 1 6 6 C 1.52995 * 109.47029 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.47029 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47303 * 59.99724 * 7 6 4 9 9 C 1.52995 * 109.47303 * 300.00108 * 8 7 6 10 10 H 1.09001 * 109.47524 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47107 * 299.99920 * 9 8 7 12 12 C 1.46896 * 111.00246 * 274.99839 * 11 9 8 13 13 C 1.52998 * 109.47357 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47104 * 55.00451 * 13 12 11 15 15 C 1.47203 * 109.47211 * 294.99967 * 13 12 11 16 16 N 6.86780 * 99.80602 * 94.37590 * 2 1 3 17 17 C 1.53002 * 109.46886 * 174.99797 * 13 12 11 18 18 C 1.50706 * 109.47153 * 184.99546 * 17 13 12 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 13 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 13 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 C 1.52999 * 109.47303 * 59.99577 * 4 2 1 27 27 H 1.09008 * 109.47036 * 300.00123 * 1 2 3 28 28 H 1.09006 * 109.47288 * 59.99833 * 1 2 3 29 29 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46470 * 239.99879 * 2 1 3 31 31 H 1.09002 * 109.47061 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46631 * 299.99785 * 3 2 1 33 33 H 1.08998 * 109.47237 * 60.00048 * 3 2 1 34 34 H 1.08998 * 109.47146 * 299.99890 * 6 4 2 35 35 H 1.08995 * 109.47113 * 59.99799 * 6 4 2 36 36 H 1.08998 * 109.47135 * 180.02562 * 7 6 4 37 37 H 1.09008 * 109.47028 * 299.99965 * 7 6 4 38 38 H 1.08997 * 109.47010 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.46884 * 60.00102 * 8 7 6 40 40 H 1.00901 * 111.00077 * 38.95830 * 11 9 8 41 41 H 1.09001 * 109.47205 * 59.99991 * 12 11 9 42 42 H 1.09002 * 109.47023 * 300.00245 * 12 11 9 43 43 H 1.09004 * 109.47178 * 65.00336 * 17 13 12 44 44 H 1.08993 * 109.47411 * 305.00018 * 17 13 12 45 45 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 46 46 H 1.08998 * 109.46884 * 60.00102 * 26 4 2 47 47 H 1.09002 * 109.46824 * 300.00245 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7218 1.2489 7 6 4.0800 -1.4436 2.4978 8 6 3.5694 -2.8859 2.4976 9 6 2.0395 -2.8854 2.4979 10 1 1.6757 -3.9129 2.4973 11 7 1.5503 -2.1931 3.6976 12 6 1.4874 -3.1084 4.8448 13 6 0.9742 -2.3531 6.0724 14 1 0.0185 -1.8845 5.8374 15 6 1.9480 -1.3172 6.4537 16 7 2.6997 -0.5164 6.7477 17 6 0.7902 -3.3323 7.2335 18 6 0.1698 -2.6132 8.4036 19 1 -0.0697 -1.5629 8.3266 20 6 -0.0921 -3.2960 9.5724 21 7 0.1946 -4.5762 9.6644 22 14 -0.8617 -2.4048 11.0225 23 1 -1.0458 -3.3565 12.1475 24 1 0.0291 -1.2969 11.4521 25 1 -2.1803 -1.8523 10.6208 26 6 1.5300 -2.1637 1.2493 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.9329 -1.2359 0.3589 35 1 3.9337 0.3057 1.2486 36 1 5.1700 -1.4437 2.4978 37 1 3.7170 -0.9299 3.3881 38 1 3.9331 -3.4002 3.3871 39 1 3.9324 -3.3996 1.6074 40 1 2.1207 -1.3878 3.9083 41 1 2.4827 -3.5025 5.0502 42 1 0.8107 -3.9317 4.6160 43 1 1.7599 -3.7343 7.5270 44 1 0.1382 -4.1479 6.9211 45 1 0.5940 -5.0391 8.9113 46 1 1.8933 -2.6776 0.3594 47 1 0.4400 -2.1636 1.2493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517127059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:42 Heat of formation + Delta-G solvation = -24.991950 kcal Electronic energy + Delta-G solvation = -22281.395337 eV Core-core repulsion = 19268.933542 eV Total energy + Delta-G solvation = -3012.461796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87738 -37.25575 -35.75434 -34.21503 -33.25273 -31.50415 -29.97975 -28.91127 -27.21365 -25.68003 -23.30104 -22.72617 -22.43010 -21.93342 -20.03522 -19.07963 -17.13252 -16.67844 -16.24364 -15.38183 -15.06156 -14.65186 -14.04986 -13.95641 -13.75033 -13.62207 -13.47767 -13.33645 -12.98653 -12.73180 -12.36796 -12.34113 -12.20251 -12.01854 -11.89675 -11.58056 -11.44065 -11.39668 -11.25698 -11.13831 -10.99976 -10.83458 -10.72818 -10.43586 -10.35403 -10.15481 -10.07978 -9.94243 -9.82356 -8.66147 -8.40521 -8.27735 -6.42852 -4.13846 3.43211 3.45432 3.49969 3.54442 3.63676 4.25675 4.49530 4.51718 4.54493 4.67916 4.73413 4.86805 4.95044 5.01546 5.21458 5.29896 5.35584 5.36901 5.42491 5.46561 5.48422 5.53881 5.55913 5.62569 5.65896 5.74097 5.75874 5.83086 5.88410 5.97046 6.00526 6.05699 6.08163 6.12072 6.13352 6.24476 6.28838 6.37986 6.42232 6.47677 7.10585 7.14236 7.26224 7.47392 8.04060 8.29663 8.40171 8.79754 9.57264 10.97959 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.003570 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.164570 B = 7841.045047 C = 8048.369775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.083 4.083 5 H 0.078 0.922 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.151 4.151 9 C 0.086 3.914 10 H 0.079 0.921 11 N -0.685 5.685 12 C 0.065 3.935 13 C 0.014 3.986 14 H 0.111 0.889 15 C 0.240 3.760 16 N -0.473 5.473 17 C 0.019 3.981 18 C -0.606 4.606 19 H 0.050 0.950 20 C 0.020 3.980 21 N -0.909 5.909 22 Si 1.066 2.934 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.286 1.286 26 C -0.101 4.101 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.339 0.661 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.014 0.986 44 H 0.030 0.970 45 H 0.269 0.731 46 H 0.058 0.942 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 4.559 -21.492 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.101 4.101 5 H 0.096 0.904 6 C -0.152 4.152 7 C -0.160 4.160 8 C -0.190 4.190 9 C -0.024 4.024 10 H 0.097 0.903 11 N -0.317 5.317 12 C -0.065 4.065 13 C -0.008 4.008 14 H 0.129 0.871 15 C -0.076 4.076 16 N -0.150 5.150 17 C -0.019 4.019 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.545 5.545 22 Si 0.894 3.106 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.212 1.212 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.160 0.840 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.032 0.968 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.309 5.486 -19.650 20.668 hybrid contribution 1.283 -0.164 -1.336 1.860 sum 4.592 5.323 -20.987 22.133 Atomic orbital electron populations 1.21888 0.95215 1.01991 1.01485 1.21117 0.95814 0.95876 0.98011 1.21906 1.00992 0.96271 1.01550 1.21184 0.94552 0.96156 0.98218 0.90410 1.21644 0.95738 1.00167 0.97635 1.21526 1.00180 0.95828 0.98449 1.22201 0.97625 0.97038 1.02123 1.21542 0.91969 0.97903 0.90967 0.90325 1.60758 1.57285 1.09875 1.03801 1.22114 1.00051 0.95401 0.88912 1.19160 0.94063 0.91712 0.95885 0.87083 1.29306 0.93335 0.93351 0.91653 1.81075 1.11882 1.11878 1.10205 1.19269 0.97300 0.93796 0.91559 1.21974 1.45270 0.97701 0.99448 0.93121 1.25789 0.95804 0.96157 1.00653 1.70806 1.39845 1.09256 1.34562 0.83582 0.76270 0.75082 0.75704 1.20683 1.21497 1.21207 1.21611 1.01283 0.94887 0.96074 0.92486 0.93298 0.92243 0.91726 0.92612 0.93128 0.92646 0.92268 0.91943 0.92115 0.92133 0.92122 0.91563 0.83973 0.94916 0.89250 0.96759 0.95178 0.92062 0.92288 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 2 C -0.09 -0.77 2.51 -90.62 -0.23 -0.99 16 3 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 4 C -0.08 -0.79 1.54 -90.62 -0.14 -0.93 16 5 H 0.08 0.90 7.21 -51.92 -0.37 0.52 16 6 C -0.11 -1.07 4.85 -26.73 -0.13 -1.20 16 7 C -0.12 -1.30 5.67 -26.73 -0.15 -1.46 16 8 C -0.15 -1.59 5.52 -26.73 -0.15 -1.73 16 9 C 0.09 0.94 2.85 -67.74 -0.19 0.75 16 10 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 11 N -0.68 -8.98 5.76 -106.76 -0.62 -9.59 16 12 C 0.07 0.97 4.92 -3.83 -0.02 0.95 16 13 C 0.01 0.26 2.42 -93.41 -0.23 0.03 16 14 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 15 C 0.24 4.94 12.98 -20.73 -0.27 4.67 16 16 N -0.47 -10.42 18.54 42.19 0.78 -9.64 16 17 C 0.02 0.45 3.74 -27.88 -0.10 0.35 16 18 C -0.61 -16.44 8.60 -34.44 -0.30 -16.74 16 19 H 0.05 1.38 7.59 -52.49 -0.40 0.99 16 20 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 21 N -0.91 -26.89 13.65 55.43 0.76 -26.13 16 22 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.10 -0.97 4.56 -26.76 -0.12 -1.09 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.76 6.26 -51.92 -0.32 0.44 16 38 H 0.06 0.70 7.46 -51.93 -0.39 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.34 4.76 4.64 -39.29 -0.18 4.58 16 41 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 42 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 43 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 44 H 0.03 0.70 8.00 -51.93 -0.42 0.28 16 45 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -29.35 359.29 -8.57 -37.92 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.36 Total: 0.74 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.46 Total: -18.77 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.92 Total: -45.36 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.35 -8.57 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517127059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.930 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds