Wall clock time and date at job start Tue Mar 31 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47186 * 2 1 4 4 C 1.53001 * 109.47093 * 120.00063 * 2 1 3 5 5 H 1.09008 * 109.47028 * 299.99819 * 4 2 1 6 6 C 1.52995 * 109.47029 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.47029 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47303 * 59.99724 * 7 6 4 9 9 C 1.52995 * 109.47303 * 300.00108 * 8 7 6 10 10 H 1.09001 * 109.47524 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47107 * 299.99920 * 9 8 7 12 12 C 1.46896 * 111.00246 * 274.99839 * 11 9 8 13 13 C 1.52998 * 109.47357 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47104 * 55.00451 * 13 12 11 15 15 C 1.47203 * 109.47211 * 294.99967 * 13 12 11 16 16 N 6.86780 * 99.80602 * 94.37590 * 2 1 3 17 17 C 1.53002 * 109.46886 * 174.99797 * 13 12 11 18 18 C 1.50706 * 109.47153 * 184.99546 * 17 13 12 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 13 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 13 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 C 1.52999 * 109.47303 * 59.99577 * 4 2 1 27 27 H 1.09008 * 109.47036 * 300.00123 * 1 2 3 28 28 H 1.09006 * 109.47288 * 59.99833 * 1 2 3 29 29 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46470 * 239.99879 * 2 1 3 31 31 H 1.09002 * 109.47061 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46631 * 299.99785 * 3 2 1 33 33 H 1.08998 * 109.47237 * 60.00048 * 3 2 1 34 34 H 1.08998 * 109.47146 * 299.99890 * 6 4 2 35 35 H 1.08995 * 109.47113 * 59.99799 * 6 4 2 36 36 H 1.08998 * 109.47135 * 180.02562 * 7 6 4 37 37 H 1.09008 * 109.47028 * 299.99965 * 7 6 4 38 38 H 1.08997 * 109.47010 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.46884 * 60.00102 * 8 7 6 40 40 H 1.00901 * 111.00077 * 38.95830 * 11 9 8 41 41 H 1.09001 * 109.47205 * 59.99991 * 12 11 9 42 42 H 1.09002 * 109.47023 * 300.00245 * 12 11 9 43 43 H 1.09004 * 109.47178 * 65.00336 * 17 13 12 44 44 H 1.08993 * 109.47411 * 305.00018 * 17 13 12 45 45 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 46 46 H 1.08998 * 109.46884 * 60.00102 * 26 4 2 47 47 H 1.09002 * 109.46824 * 300.00245 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7218 1.2489 7 6 4.0800 -1.4436 2.4978 8 6 3.5694 -2.8859 2.4976 9 6 2.0395 -2.8854 2.4979 10 1 1.6757 -3.9129 2.4973 11 7 1.5503 -2.1931 3.6976 12 6 1.4874 -3.1084 4.8448 13 6 0.9742 -2.3531 6.0724 14 1 0.0185 -1.8845 5.8374 15 6 1.9480 -1.3172 6.4537 16 7 2.6997 -0.5164 6.7477 17 6 0.7902 -3.3323 7.2335 18 6 0.1698 -2.6132 8.4036 19 1 -0.0697 -1.5629 8.3266 20 6 -0.0921 -3.2960 9.5724 21 7 0.1946 -4.5762 9.6644 22 14 -0.8617 -2.4048 11.0225 23 1 -1.0458 -3.3565 12.1475 24 1 0.0291 -1.2969 11.4521 25 1 -2.1803 -1.8523 10.6208 26 6 1.5300 -2.1637 1.2493 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.9329 -1.2359 0.3589 35 1 3.9337 0.3057 1.2486 36 1 5.1700 -1.4437 2.4978 37 1 3.7170 -0.9299 3.3881 38 1 3.9331 -3.4002 3.3871 39 1 3.9324 -3.3996 1.6074 40 1 2.1207 -1.3878 3.9083 41 1 2.4827 -3.5025 5.0502 42 1 0.8107 -3.9317 4.6160 43 1 1.7599 -3.7343 7.5270 44 1 0.1382 -4.1479 6.9211 45 1 0.5940 -5.0391 8.9113 46 1 1.8933 -2.6776 0.3594 47 1 0.4400 -2.1636 1.2493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517127059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:41 Heat of formation + Delta-G solvation = -39.835172 kcal Electronic energy + Delta-G solvation = -22282.038988 eV Core-core repulsion = 19268.933542 eV Total energy + Delta-G solvation = -3013.105446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.74618 -38.68747 -36.83422 -35.93190 -34.69386 -32.88231 -30.93162 -29.88757 -28.02176 -27.31061 -24.56654 -23.98114 -23.74824 -23.03660 -20.77148 -19.95295 -19.05112 -18.30984 -17.28365 -16.33211 -16.05257 -15.73173 -15.59402 -15.35933 -14.96381 -14.75233 -14.50728 -14.34860 -14.15823 -14.04732 -13.95005 -13.40628 -13.37306 -13.13282 -13.07426 -12.93295 -12.71799 -12.43888 -12.38700 -12.23900 -12.05758 -11.99923 -11.94837 -11.90350 -11.67991 -11.55349 -11.17827 -10.87121 -10.70798 -10.63810 -10.53588 -9.33467 -8.64837 -6.35839 1.53172 1.59387 1.78552 1.82900 1.84671 2.55699 3.10985 3.18471 3.20686 3.73241 3.75568 3.88709 4.06425 4.11380 4.21218 4.26652 4.29012 4.45497 4.47293 4.56487 4.60740 4.65712 4.75273 4.77645 4.79031 4.82096 4.87497 4.91947 5.00380 5.07473 5.09110 5.14940 5.19791 5.22030 5.26284 5.29536 5.35812 5.38487 5.43090 5.49635 5.63650 5.71385 5.92897 6.12647 6.19746 6.35973 6.61403 6.66531 7.41907 8.77310 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.003570 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.164570 B = 7841.045047 C = 8048.369775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.079 4.079 5 H 0.054 0.946 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.147 4.147 9 C 0.084 3.916 10 H 0.086 0.914 11 N -0.684 5.684 12 C 0.077 3.923 13 C 0.025 3.975 14 H 0.120 0.880 15 C 0.248 3.752 16 N -0.500 5.500 17 C 0.023 3.977 18 C -0.616 4.616 19 H 0.045 0.955 20 C -0.030 4.030 21 N -0.935 5.935 22 Si 1.105 2.895 23 H -0.282 1.282 24 H -0.283 1.283 25 H -0.264 1.264 26 C -0.095 4.095 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.334 0.666 41 H 0.029 0.971 42 H 0.105 0.895 43 H -0.005 1.005 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.077 0.923 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 4.736 -23.284 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.098 4.098 5 H 0.073 0.927 6 C -0.146 4.146 7 C -0.160 4.160 8 C -0.186 4.186 9 C -0.025 4.025 10 H 0.104 0.896 11 N -0.317 5.317 12 C -0.053 4.053 13 C 0.003 3.997 14 H 0.138 0.862 15 C -0.068 4.068 16 N -0.177 5.177 17 C -0.016 4.016 18 C -0.654 4.654 19 H 0.063 0.937 20 C -0.229 4.229 21 N -0.572 5.572 22 Si 0.928 3.072 23 H -0.207 1.207 24 H -0.209 1.209 25 H -0.189 1.189 26 C -0.133 4.133 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.154 0.846 41 H 0.047 0.953 42 H 0.123 0.877 43 H 0.013 0.987 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.993 5.669 -21.473 22.409 hybrid contribution 1.408 -0.204 -0.812 1.639 sum 4.402 5.464 -22.285 23.364 Atomic orbital electron populations 1.21877 0.95285 1.02049 1.01269 1.21092 0.95709 0.95899 0.97732 1.21902 1.01204 0.96172 1.01409 1.21126 0.94697 0.96143 0.97844 0.92737 1.21607 0.95463 1.00191 0.97378 1.21516 1.00372 0.95940 0.98144 1.22164 0.97260 0.96832 1.02320 1.21663 0.92289 0.98218 0.90365 0.89633 1.60772 1.57588 1.09510 1.03802 1.21959 1.00009 0.95356 0.88000 1.19100 0.94286 0.90514 0.95839 0.86244 1.29682 0.93040 0.93145 0.90933 1.81068 1.12865 1.12814 1.10973 1.19134 0.95828 0.94471 0.92119 1.22378 1.44669 0.97656 1.00718 0.93676 1.27073 0.96030 0.96259 1.03503 1.70911 1.41597 1.10185 1.34548 0.83062 0.76670 0.74293 0.73162 1.20719 1.20913 1.18916 1.21581 1.01064 0.94745 0.95924 0.93815 0.92406 0.92046 0.90580 0.92279 0.92241 0.93825 0.90810 0.91936 0.91796 0.94536 0.93532 0.89712 0.84585 0.95269 0.87717 0.98651 0.94907 0.92909 0.90484 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.84 71.98 0.64 -1.65 16 2 C -0.09 -1.30 2.51 -10.79 -0.03 -1.32 16 3 C -0.15 -2.26 8.84 71.98 0.64 -1.62 16 4 C -0.08 -1.40 1.54 -10.80 -0.02 -1.42 16 5 H 0.05 1.23 7.21 -2.38 -0.02 1.22 16 6 C -0.11 -1.85 4.85 30.59 0.15 -1.70 16 7 C -0.12 -2.48 5.67 30.59 0.17 -2.31 16 8 C -0.15 -2.85 5.52 30.59 0.17 -2.68 16 9 C 0.08 1.68 2.85 44.90 0.13 1.81 16 10 H 0.09 1.62 7.80 -2.39 -0.02 1.60 16 11 N -0.68 -17.28 5.76 -491.68 -2.83 -20.11 16 12 C 0.08 2.22 4.92 86.30 0.42 2.64 16 13 C 0.02 0.90 2.42 -12.60 -0.03 0.87 16 14 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 15 C 0.25 10.22 12.98 89.43 1.16 11.38 16 16 N -0.50 -22.12 18.54 20.02 0.37 -21.75 16 17 C 0.02 1.08 3.74 29.85 0.11 1.19 16 18 C -0.62 -33.43 8.60 25.60 0.22 -33.21 16 19 H 0.04 2.45 7.59 -2.91 -0.02 2.43 16 20 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 21 N -0.94 -55.72 13.65 21.45 0.29 -55.43 16 22 Si 1.11 50.20 29.90 68.60 2.05 52.25 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 26 C -0.10 -1.62 4.56 30.58 0.14 -1.48 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.92 6.43 -2.39 -0.02 0.91 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.84 6.43 -2.39 -0.02 0.83 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.06 6.43 -2.39 -0.02 1.05 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 0.92 6.26 -2.38 -0.01 0.90 16 38 H 0.05 1.04 7.46 -2.39 -0.02 1.02 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.33 9.27 4.64 -89.69 -0.42 8.85 16 41 H 0.03 0.86 7.44 -2.39 -0.02 0.85 16 42 H 0.10 2.72 8.06 -2.39 -0.02 2.70 16 43 H 0.00 -0.24 8.01 -2.39 -0.02 -0.26 16 44 H 0.03 1.51 8.00 -2.39 -0.02 1.49 16 45 H 0.26 15.39 7.22 -92.71 -0.67 14.72 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.27 6.43 -2.39 -0.02 1.25 16 Total: -1.00 -62.28 359.29 4.83 -57.45 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.61 Total: 18.32 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.34 Total: -30.73 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -2.17 Total: -97.29 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -62.28 4.83 -57.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517127059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.614 kcal (2) G-P(sol) polarization free energy of solvation -62.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds