Wall clock time and date at job start Tue Mar 31 2020 00:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47171 * 2 1 4 4 C 1.50705 * 109.46953 * 120.00105 * 2 1 3 5 5 H 1.07997 * 119.99826 * 119.99651 * 4 2 1 6 6 C 1.37874 * 119.99944 * 299.99646 * 4 2 1 7 7 N 1.31514 * 120.00218 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47554 * 119.99726 * 8 6 4 11 11 H 1.48498 * 109.47527 * 240.00218 * 8 6 4 12 12 N 1.46904 * 109.46976 * 239.99715 * 2 1 3 13 13 C 1.46899 * 110.99882 * 183.95662 * 12 2 1 14 14 C 1.38574 * 110.99720 * 60.00082 * 12 2 1 15 15 N 1.31222 * 126.47718 * 0.02562 * 14 12 2 16 16 N 1.28529 * 109.86345 * 179.72785 * 15 14 12 17 17 C 1.30292 * 110.04925 * 0.44994 * 16 15 14 18 18 C 1.50706 * 126.34587 * 179.82428 * 17 16 15 19 19 C 1.54266 * 110.03307 * 56.85352 * 18 17 16 20 20 C 1.54886 * 104.19636 * 217.11019 * 19 18 17 21 21 C 1.54893 * 102.74991 * 37.94243 * 20 19 18 22 22 C 1.53873 * 110.02927 * 299.68892 * 18 17 16 23 23 N 1.36455 * 126.47404 * 179.97438 * 14 12 2 24 24 C 1.46507 * 127.13223 * 0.02562 * 23 14 12 25 25 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47031 * 300.00106 * 1 2 3 27 27 H 1.08992 * 109.46930 * 59.99932 * 1 2 3 28 28 H 0.96995 * 120.00178 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46797 * 296.04955 * 13 12 2 30 30 H 1.08996 * 109.47311 * 56.04710 * 13 12 2 31 31 H 1.08995 * 109.47139 * 176.05075 * 13 12 2 32 32 H 1.09000 * 110.01820 * 178.29798 * 18 17 16 33 33 H 1.08998 * 110.48379 * 335.78457 * 19 18 17 34 34 H 1.09001 * 110.48707 * 98.43031 * 19 18 17 35 35 H 1.09004 * 110.75377 * 279.62714 * 20 19 18 36 36 H 1.09001 * 110.75934 * 156.25868 * 20 19 18 37 37 H 1.08997 * 110.48365 * 203.38574 * 21 20 19 38 38 H 1.08995 * 110.59756 * 80.79533 * 21 20 19 39 39 H 1.08998 * 110.03454 * 238.57038 * 22 18 17 40 40 H 1.09003 * 110.03151 * 359.95277 * 22 18 17 41 41 H 1.08997 * 109.47224 * 270.00039 * 24 23 14 42 42 H 1.08996 * 109.47007 * 30.00023 * 24 23 14 43 43 H 1.09006 * 109.46386 * 150.00062 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.1483 -2.2857 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1870 14 6 1.5753 -0.0642 -2.3518 15 7 0.8190 1.0063 -2.4146 16 7 0.6050 1.3185 -3.6429 17 6 1.1993 0.4672 -4.4301 18 6 1.1864 0.4848 -5.9370 19 6 1.7231 1.8354 -6.4544 20 6 0.8521 2.1387 -7.6987 21 6 -0.5482 1.6372 -7.2662 22 6 -0.2576 0.3588 -6.4533 23 7 1.8424 -0.4412 -3.6358 24 6 2.6498 -1.5830 -4.0725 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7088 1.1613 3.4844 29 1 3.9192 0.2042 -1.2300 30 1 3.8069 -1.2916 -0.2719 31 1 3.8163 -1.3722 -2.0500 32 1 1.7943 -0.3326 -6.3249 33 1 1.5938 2.6114 -5.6999 34 1 2.7724 1.7464 -6.7357 35 1 1.2105 1.5837 -8.5656 36 1 0.8324 3.2089 -7.9049 37 1 -1.1563 1.4036 -8.1401 38 1 -1.0462 2.3804 -6.6436 39 1 -0.3504 -0.5193 -7.0924 40 1 -0.9490 0.2841 -5.6139 41 1 3.6892 -1.2729 -4.1804 42 1 2.5834 -2.3795 -3.3315 43 1 2.2775 -1.9459 -5.0306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558452444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:09 Heat of formation + Delta-G solvation = 87.229773 kcal Electronic energy + Delta-G solvation = -22573.367034 eV Core-core repulsion = 19462.231194 eV Total energy + Delta-G solvation = -3111.135840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46219 -38.16037 -36.96340 -34.64326 -32.81379 -30.60753 -29.21529 -28.76056 -27.93987 -27.16140 -25.25436 -24.24087 -22.24713 -21.37202 -20.72723 -19.81650 -18.96762 -16.86208 -16.45894 -15.86989 -15.63752 -15.46099 -14.96009 -14.54240 -14.02166 -13.87416 -13.42432 -13.26196 -13.02969 -12.84072 -12.35440 -11.90628 -11.66724 -11.54780 -11.18202 -11.15600 -11.14989 -11.01347 -10.85111 -10.79691 -10.65602 -10.47721 -10.31660 -10.16080 -10.03850 -9.78013 -9.51971 -9.27586 -8.58985 -8.43090 -7.28961 -6.03497 -4.11600 2.29955 2.73025 3.27644 3.35383 3.38062 3.45218 4.32064 4.36438 4.54238 4.58091 4.64011 4.78949 5.01069 5.13482 5.18366 5.27956 5.37489 5.41202 5.45975 5.49607 5.59864 5.64433 5.75312 5.83400 5.85617 5.99181 6.01064 6.14222 6.18752 6.29479 6.35389 6.41008 6.50291 6.95949 7.03829 7.23851 7.42151 7.48578 7.74686 7.75245 8.00490 8.30650 8.47268 8.90308 9.45232 9.53249 11.02586 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.004121 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.654275 B = 6793.419230 C = 7186.052332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.230 3.770 3 H 0.020 0.980 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.454 5.454 13 C 0.033 3.967 14 C 0.383 3.617 15 N -0.316 5.316 16 N -0.282 5.282 17 C 0.151 3.849 18 C 0.006 3.994 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.113 4.113 23 N -0.495 5.495 24 C 0.080 3.920 25 H 0.022 0.978 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -2.968 -19.207 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.127 3.873 3 H 0.038 0.962 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.178 5.178 13 C -0.114 4.114 14 C 0.028 3.972 15 N -0.161 5.161 16 N -0.120 5.120 17 C -0.116 4.116 18 C -0.016 4.016 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.151 4.151 23 N -0.192 5.192 24 C -0.064 4.064 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.313 -2.167 -18.527 18.796 hybrid contribution 1.404 -1.135 0.617 1.908 sum 3.717 -3.302 -17.910 18.587 Atomic orbital electron populations 1.21967 0.96518 0.99208 1.02419 1.19366 0.93609 0.92329 0.82046 0.96190 1.21107 1.32185 1.12767 0.89608 0.91722 1.24900 0.94997 0.95018 0.98955 1.69940 1.35944 1.22568 1.23534 0.86426 0.78599 0.79485 0.82772 1.19765 1.21024 1.20909 1.59074 1.10471 1.48544 0.99720 1.22430 0.85481 1.00446 1.03067 1.23295 0.98295 0.91534 0.84066 1.74843 1.20003 1.10588 1.10642 1.73886 1.19694 1.21812 0.96641 1.24375 1.00285 0.91462 0.95515 1.20068 0.98065 0.99233 0.84195 1.22433 0.98730 0.96186 0.97813 1.22474 0.95355 1.00968 0.97185 1.22328 0.96980 0.97364 0.99202 1.22167 0.94967 0.98128 0.99852 1.46090 1.41871 1.25089 1.06169 1.21987 0.94782 0.87702 1.01893 0.95894 0.89544 0.93564 0.92789 0.95339 0.88368 0.93201 0.90140 0.90068 0.91712 0.91668 0.91373 0.91835 0.90975 0.91674 0.90843 0.90923 0.88839 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.77 37.16 0.33 -3.50 16 2 C 0.23 6.06 1.73 -68.86 -0.12 5.94 16 3 H 0.02 0.60 8.11 -51.93 -0.42 0.18 16 4 C -0.52 -14.03 7.88 -34.44 -0.27 -14.30 16 5 H 0.06 1.69 6.41 -52.49 -0.34 1.35 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.46 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.45 -10.10 4.69 -176.08 -0.83 -10.92 16 13 C 0.03 0.62 9.08 60.06 0.55 1.16 16 14 C 0.38 8.21 6.76 -318.88 -2.15 6.06 16 15 N -0.32 -7.48 9.00 30.31 0.27 -7.20 16 16 N -0.28 -5.85 11.94 32.99 0.39 -5.45 16 17 C 0.15 2.51 6.30 -154.02 -0.97 1.54 16 18 C 0.01 0.06 3.31 -90.65 -0.30 -0.24 16 19 C -0.11 -1.23 6.35 -25.07 -0.16 -1.39 16 20 C -0.12 -1.07 6.91 -24.74 -0.17 -1.24 16 21 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 22 C -0.11 -1.24 6.45 -25.61 -0.17 -1.40 16 23 N -0.49 -8.33 3.21 -121.45 -0.39 -8.72 16 24 C 0.08 0.91 9.20 59.85 0.55 1.46 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 2.49 6.07 -51.92 -0.32 2.18 16 27 H 0.05 1.22 5.43 -51.93 -0.28 0.94 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 1.88 6.10 -51.93 -0.32 1.56 16 31 H 0.05 0.73 5.40 -51.93 -0.28 0.45 16 32 H 0.08 0.76 7.00 -51.93 -0.36 0.40 16 33 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 41 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 42 H 0.09 1.09 7.57 -51.93 -0.39 0.69 16 43 H 0.08 0.70 7.26 -51.93 -0.38 0.33 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -32.30 331.85 -9.90 -42.20 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.81 Total: -0.46 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.15 Total: -5.58 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.08 Total: -57.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.30 -9.90 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558452444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.427 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds