Wall clock time and date at job start Tue Mar 31 2020 00:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47171 * 2 1 4 4 C 1.50705 * 109.46953 * 120.00105 * 2 1 3 5 5 H 1.07997 * 119.99826 * 119.99651 * 4 2 1 6 6 C 1.37874 * 119.99944 * 299.99646 * 4 2 1 7 7 N 1.31514 * 120.00218 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47554 * 119.99726 * 8 6 4 11 11 H 1.48498 * 109.47527 * 240.00218 * 8 6 4 12 12 N 1.46904 * 109.46976 * 239.99715 * 2 1 3 13 13 C 1.46899 * 110.99882 * 183.95662 * 12 2 1 14 14 C 1.38574 * 110.99720 * 60.00082 * 12 2 1 15 15 N 1.31222 * 126.47718 * 0.02562 * 14 12 2 16 16 N 1.28529 * 109.86345 * 179.72785 * 15 14 12 17 17 C 1.30292 * 110.04925 * 0.44994 * 16 15 14 18 18 C 1.50706 * 126.34587 * 179.82428 * 17 16 15 19 19 C 1.54266 * 110.03307 * 56.85352 * 18 17 16 20 20 C 1.54886 * 104.19636 * 217.11019 * 19 18 17 21 21 C 1.54893 * 102.74991 * 37.94243 * 20 19 18 22 22 C 1.53873 * 110.02927 * 299.68892 * 18 17 16 23 23 N 1.36455 * 126.47404 * 179.97438 * 14 12 2 24 24 C 1.46507 * 127.13223 * 0.02562 * 23 14 12 25 25 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47031 * 300.00106 * 1 2 3 27 27 H 1.08992 * 109.46930 * 59.99932 * 1 2 3 28 28 H 0.96995 * 120.00178 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46797 * 296.04955 * 13 12 2 30 30 H 1.08996 * 109.47311 * 56.04710 * 13 12 2 31 31 H 1.08995 * 109.47139 * 176.05075 * 13 12 2 32 32 H 1.09000 * 110.01820 * 178.29798 * 18 17 16 33 33 H 1.08998 * 110.48379 * 335.78457 * 19 18 17 34 34 H 1.09001 * 110.48707 * 98.43031 * 19 18 17 35 35 H 1.09004 * 110.75377 * 279.62714 * 20 19 18 36 36 H 1.09001 * 110.75934 * 156.25868 * 20 19 18 37 37 H 1.08997 * 110.48365 * 203.38574 * 21 20 19 38 38 H 1.08995 * 110.59756 * 80.79533 * 21 20 19 39 39 H 1.08998 * 110.03454 * 238.57038 * 22 18 17 40 40 H 1.09003 * 110.03151 * 359.95277 * 22 18 17 41 41 H 1.08997 * 109.47224 * 270.00039 * 24 23 14 42 42 H 1.08996 * 109.47007 * 30.00023 * 24 23 14 43 43 H 1.09006 * 109.46386 * 150.00062 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.1483 -2.2857 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 3.4850 -0.7947 -1.1870 14 6 1.5753 -0.0642 -2.3518 15 7 0.8190 1.0063 -2.4146 16 7 0.6050 1.3185 -3.6429 17 6 1.1993 0.4672 -4.4301 18 6 1.1864 0.4848 -5.9370 19 6 1.7231 1.8354 -6.4544 20 6 0.8521 2.1387 -7.6987 21 6 -0.5482 1.6372 -7.2662 22 6 -0.2576 0.3588 -6.4533 23 7 1.8424 -0.4412 -3.6358 24 6 2.6498 -1.5830 -4.0725 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.7088 1.1613 3.4844 29 1 3.9192 0.2042 -1.2300 30 1 3.8069 -1.2916 -0.2719 31 1 3.8163 -1.3722 -2.0500 32 1 1.7943 -0.3326 -6.3249 33 1 1.5938 2.6114 -5.6999 34 1 2.7724 1.7464 -6.7357 35 1 1.2105 1.5837 -8.5656 36 1 0.8324 3.2089 -7.9049 37 1 -1.1563 1.4036 -8.1401 38 1 -1.0462 2.3804 -6.6436 39 1 -0.3504 -0.5193 -7.0924 40 1 -0.9490 0.2841 -5.6139 41 1 3.6892 -1.2729 -4.1804 42 1 2.5834 -2.3795 -3.3315 43 1 2.2775 -1.9459 -5.0306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558452444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:09 Heat of formation + Delta-G solvation = 68.689203 kcal Electronic energy + Delta-G solvation = -22574.171014 eV Core-core repulsion = 19462.231194 eV Total energy + Delta-G solvation = -3111.939820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.92957 -39.27187 -38.50532 -36.02602 -34.79000 -31.86495 -31.17658 -29.58135 -29.25897 -28.28098 -27.19852 -25.95231 -23.77716 -22.85584 -21.56333 -21.29091 -20.24702 -18.55706 -17.91640 -17.41075 -17.01425 -16.82405 -16.26618 -16.02763 -15.59951 -15.19129 -14.69426 -14.46296 -14.27230 -14.08722 -13.86875 -13.54729 -13.01347 -12.84431 -12.82559 -12.57068 -12.46469 -12.25944 -12.15230 -12.07374 -12.01057 -11.94863 -11.88378 -11.68183 -11.46813 -11.30179 -11.02591 -10.92335 -10.56954 -10.42427 -8.98752 -8.13853 -6.30180 0.89295 1.38648 1.44322 1.45931 1.57509 1.93116 2.40820 2.99141 3.17374 3.33404 3.66322 3.74532 3.82085 4.08304 4.15774 4.28159 4.33386 4.44695 4.47242 4.55133 4.61922 4.62861 4.65421 4.78380 4.81698 4.85830 4.94872 4.96617 5.06019 5.11276 5.15833 5.26065 5.30958 5.32434 5.40595 5.44994 5.54518 5.59922 5.64482 5.95166 6.03659 6.15684 6.59048 6.80154 7.38953 7.94041 8.93197 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.004121 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.654275 B = 6793.419230 C = 7186.052332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.243 3.757 3 H -0.027 1.027 4 C -0.528 4.528 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.455 5.455 13 C 0.035 3.965 14 C 0.361 3.639 15 N -0.369 5.369 16 N -0.329 5.329 17 C 0.179 3.821 18 C 0.004 3.996 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.111 4.111 23 N -0.487 5.487 24 C 0.065 3.935 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.014 0.986 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -5.410 -21.948 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 H -0.010 1.010 4 C -0.567 4.567 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.179 5.179 13 C -0.112 4.112 14 C 0.003 3.997 15 N -0.213 5.213 16 N -0.167 5.167 17 C -0.090 4.090 18 C -0.017 4.017 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.150 4.150 23 N -0.183 5.183 24 C -0.076 4.076 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.150 -4.632 -21.309 22.198 hybrid contribution 0.834 -0.338 1.297 1.578 sum 4.984 -4.971 -20.012 21.214 Atomic orbital electron populations 1.21760 0.97486 0.98333 1.00950 1.18944 0.92812 0.90291 0.84250 1.00975 1.21412 1.32218 1.12976 0.90052 0.90629 1.25845 0.95035 0.95642 1.02352 1.70104 1.37222 1.24225 1.24281 0.85291 0.78039 0.78603 0.78373 1.18091 1.20706 1.20831 1.58993 1.12315 1.47815 0.98771 1.22525 0.83464 1.00301 1.04913 1.23160 0.99091 0.91974 0.85430 1.74666 1.21484 1.12497 1.12682 1.73788 1.22407 1.24187 0.96296 1.25393 0.97003 0.89295 0.97322 1.20495 0.99503 1.01246 0.80466 1.22432 1.00497 0.94491 0.97835 1.22464 0.93871 1.01693 0.96941 1.22340 0.97998 0.96209 0.99448 1.22181 0.93465 1.00103 0.99224 1.46344 1.41696 1.26060 1.04221 1.22494 0.95636 0.85837 1.03637 0.96156 0.92142 0.93889 0.92785 0.96762 0.88896 0.88618 0.86129 0.93675 0.89592 0.88789 0.91055 0.89555 0.93485 0.88528 0.94368 0.88324 0.88891 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.19 8.77 71.98 0.63 -6.56 16 2 C 0.24 13.36 1.73 44.17 0.08 13.44 16 3 H -0.03 -1.74 8.11 -2.39 -0.02 -1.76 16 4 C -0.53 -29.16 7.88 25.60 0.20 -28.96 16 5 H 0.08 3.92 6.41 -2.91 -0.02 3.90 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -55.17 11.32 21.45 0.24 -54.92 16 8 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 N -0.46 -20.57 4.69 -710.99 -3.33 -23.90 16 13 C 0.03 1.27 9.08 127.69 1.16 2.43 16 14 C 0.36 15.75 6.76 260.11 1.76 17.51 16 15 N -0.37 -18.40 9.00 -58.00 -0.52 -18.92 16 16 N -0.33 -14.24 11.94 -49.54 -0.59 -14.83 16 17 C 0.18 5.80 6.30 137.64 0.87 6.67 16 18 C 0.00 0.08 3.31 -10.81 -0.04 0.04 16 19 C -0.11 -2.20 6.35 31.67 0.20 -2.00 16 20 C -0.11 -1.61 6.91 31.89 0.22 -1.39 16 21 C -0.12 -2.12 6.83 31.67 0.22 -1.90 16 22 C -0.11 -2.17 6.45 31.32 0.20 -1.97 16 23 N -0.49 -15.65 3.21 -538.16 -1.73 -17.37 16 24 C 0.06 1.21 9.20 127.77 1.18 2.38 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 3.70 6.07 -2.38 -0.01 3.69 16 27 H 0.04 2.43 5.43 -2.39 -0.01 2.42 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 3.48 6.10 -2.39 -0.01 3.47 16 31 H 0.10 2.56 5.40 -2.39 -0.01 2.55 16 32 H 0.12 1.57 7.00 -2.39 -0.02 1.55 16 33 H 0.04 1.21 7.66 -2.39 -0.02 1.19 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.02 7.67 -2.39 -0.02 1.00 16 41 H 0.10 1.39 7.85 -2.39 -0.02 1.37 16 42 H 0.09 1.81 7.57 -2.39 -0.02 1.79 16 43 H 0.12 1.36 7.26 -2.38 -0.02 1.34 16 Total: -1.00 -76.75 331.85 4.21 -72.54 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.99 Total: 11.31 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 7.12 Total: 0.72 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.93 Total: -129.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.75 4.21 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558452444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.224 kcal (2) G-P(sol) polarization free energy of solvation -76.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds