Wall clock time and date at job start Tue Mar 31 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52993 * 109.47042 * 120.00211 * 2 1 3 5 5 C 1.52998 * 109.47391 * 300.00128 * 4 2 1 6 6 C 1.47201 * 109.47459 * 180.02562 * 5 4 2 7 7 N 4.86670 * 100.28953 * 104.87930 * 2 1 3 8 8 C 1.53003 * 109.47149 * 240.00153 * 2 1 3 9 9 N 1.46897 * 109.47034 * 66.27801 * 8 2 1 10 10 C 1.46848 * 111.00300 * 330.20546 * 9 8 2 11 11 C 1.53035 * 109.52546 * 185.84006 * 10 9 8 12 12 C 1.53112 * 109.27771 * 300.82034 * 11 10 9 13 13 C 1.53002 * 109.57691 * 177.59191 * 12 11 10 14 14 C 1.50706 * 109.47005 * 65.28355 * 13 12 11 15 15 H 1.07996 * 119.99952 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99986 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00010 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47165 * 89.99970 * 18 16 14 20 20 H 1.48496 * 109.47298 * 209.99807 * 18 16 14 21 21 H 1.48500 * 109.46950 * 329.99822 * 18 16 14 22 22 C 1.53120 * 109.16426 * 57.65709 * 12 11 10 23 23 C 1.46847 * 111.00132 * 94.41521 * 9 8 2 24 24 H 1.08999 * 109.47206 * 257.22228 * 1 2 3 25 25 H 1.09001 * 109.47066 * 17.22076 * 1 2 3 26 26 H 1.09000 * 109.46794 * 137.21946 * 1 2 3 27 27 H 1.08992 * 109.47662 * 223.95362 * 3 2 1 28 28 H 1.09002 * 109.47065 * 343.96156 * 3 2 1 29 29 H 1.09004 * 109.46877 * 103.95688 * 3 2 1 30 30 H 1.09004 * 109.47408 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47481 * 60.00430 * 4 2 1 32 32 H 1.09005 * 109.46944 * 300.00099 * 5 4 2 33 33 H 1.08997 * 109.47508 * 59.99855 * 5 4 2 34 34 H 1.08996 * 109.46863 * 186.27750 * 8 2 1 35 35 H 1.09001 * 109.46822 * 306.27714 * 8 2 1 36 36 H 1.08997 * 109.46382 * 305.86193 * 10 9 8 37 37 H 1.09004 * 109.45968 * 65.82467 * 10 9 8 38 38 H 1.09001 * 109.50231 * 180.88245 * 11 10 9 39 39 H 1.08990 * 109.50310 * 60.76516 * 11 10 9 40 40 H 1.09000 * 109.52982 * 297.75159 * 12 11 10 41 41 H 1.08997 * 109.47568 * 185.28448 * 13 12 11 42 42 H 1.09006 * 109.47028 * 305.28958 * 13 12 11 43 43 H 0.96999 * 120.00101 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.50800 * 182.40202 * 22 12 11 45 45 H 1.09004 * 109.50560 * 62.28167 * 22 12 11 46 46 H 1.08994 * 109.46322 * 294.17916 * 23 9 8 47 47 H 1.09006 * 109.46255 * 54.15853 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4984 6 6 2.0212 -0.6937 3.7003 7 7 2.3994 -1.2296 4.6279 8 6 2.0401 -0.7212 -1.2493 9 7 1.6780 0.0532 -2.4439 10 6 0.4360 0.8060 -2.2266 11 6 0.0126 1.4822 -3.5326 12 6 1.1268 2.4232 -3.9988 13 6 0.7362 3.0577 -5.3352 14 6 -0.4672 3.9432 -5.1381 15 1 -0.9089 4.0438 -4.1578 16 6 -1.0042 4.6250 -6.2095 17 7 -2.0540 5.3982 -6.0374 18 14 -0.2406 4.4505 -7.9054 19 1 -0.8813 3.3191 -8.6227 20 1 -0.4482 5.7045 -8.6732 21 1 1.2148 4.1892 -7.7683 22 6 2.4211 1.6233 -4.1711 23 6 2.7746 0.9430 -2.8466 24 1 -0.3633 -0.2273 1.0022 25 1 -0.3633 0.9816 -0.3042 26 1 -0.3633 -0.7543 -0.6980 27 1 2.8586 1.5385 -0.7132 28 1 1.2300 2.1143 -0.2839 29 1 2.3949 1.7024 0.9974 30 1 3.1300 -0.7209 1.2495 31 1 1.6768 -1.7490 1.2491 32 1 1.8934 1.0276 2.4985 33 1 0.4400 -0.0001 2.4985 34 1 3.1242 -0.8195 -1.1948 35 1 1.5879 -1.7113 -1.3072 36 1 -0.3492 0.1245 -1.8993 37 1 0.6003 1.5647 -1.4614 38 1 -0.9007 2.0536 -3.3670 39 1 -0.1652 0.7232 -4.2943 40 1 1.2784 3.2053 -3.2548 41 1 1.5679 3.6533 -5.7115 42 1 0.4965 2.2735 -6.0534 43 1 -2.4316 5.8781 -6.7911 44 1 3.2284 2.2954 -4.4618 45 1 2.2811 0.8665 -4.9430 46 1 2.9279 1.7010 -2.0785 47 1 3.6879 0.3609 -2.9700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575316169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:31 Heat of formation + Delta-G solvation = 49.807604 kcal Electronic energy + Delta-G solvation = -22637.620780 eV Core-core repulsion = 19628.402537 eV Total energy + Delta-G solvation = -3009.218244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67817 -37.60608 -36.44205 -34.11494 -32.29852 -31.34711 -30.11200 -28.91193 -27.60242 -26.69411 -24.47827 -22.81750 -22.26796 -20.42851 -19.14887 -18.97510 -17.76875 -16.69887 -15.94572 -15.68765 -15.31150 -14.82903 -14.57665 -14.30925 -14.01263 -13.90374 -13.40288 -13.22030 -12.87228 -12.84516 -12.61605 -12.34551 -12.13210 -12.02108 -11.93991 -11.70407 -11.54690 -11.29560 -11.15756 -11.07076 -10.84519 -10.68071 -10.60377 -10.44983 -10.19681 -10.02581 -9.72789 -9.47650 -9.10389 -8.95122 -8.49883 -7.85818 -6.01060 -3.97549 2.45438 2.48773 3.33073 3.40523 3.44620 3.62443 4.15566 4.41023 4.46498 4.48582 4.70866 4.85496 4.94638 5.00865 5.19909 5.24862 5.32559 5.33258 5.41517 5.47128 5.49433 5.56401 5.64610 5.71050 5.74101 5.81487 5.91945 5.93509 6.03730 6.04565 6.10760 6.17161 6.30521 6.34652 6.39279 6.54999 6.62326 6.90072 6.99947 7.09736 7.26189 7.32778 7.36286 7.44722 7.54602 7.85147 8.58337 9.04233 9.62758 11.12372 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.035255 B = 0.003426 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.020956 B = 8169.934494 C = 8553.493537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 C -0.177 4.177 4 C -0.101 4.101 5 C -0.036 4.036 6 C 0.208 3.792 7 N -0.446 5.446 8 C 0.064 3.936 9 N -0.530 5.530 10 C 0.015 3.985 11 C -0.106 4.106 12 C -0.071 4.071 13 C -0.010 4.010 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.266 1.266 22 C -0.115 4.115 23 C 0.044 3.956 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.261 0.739 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -11.236 12.545 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.091 4.091 3 C -0.233 4.233 4 C -0.140 4.140 5 C -0.076 4.076 6 C -0.109 4.109 7 N -0.123 5.123 8 C -0.065 4.065 9 N -0.253 5.253 10 C -0.111 4.111 11 C -0.143 4.143 12 C -0.089 4.089 13 C -0.047 4.047 14 C -0.550 4.550 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.191 1.191 22 C -0.153 4.153 23 C -0.083 4.083 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.517 -12.247 13.439 20.079 hybrid contribution 0.299 0.785 -0.737 1.118 sum 8.816 -11.462 12.703 19.247 Atomic orbital electron populations 1.22930 0.93916 1.03643 1.01344 1.21157 0.96596 0.96139 0.95182 1.22842 1.02766 0.95284 1.02395 1.21590 1.01267 0.99542 0.91621 1.19615 1.02854 0.99296 0.85789 1.29369 0.93349 0.93691 0.94520 1.81236 1.09474 1.09766 1.11785 1.22395 0.99842 0.97199 0.87028 1.62178 1.04026 1.27085 1.32013 1.23644 0.91860 0.96917 0.98717 1.21624 0.99115 0.97902 0.95701 1.21018 0.92774 0.95798 0.99353 1.19617 0.96775 0.95507 0.92784 1.21153 1.11530 1.25538 0.96764 0.90973 1.25031 0.94717 0.94949 0.98915 1.69912 1.22987 1.30271 1.31414 0.86809 0.80474 0.77372 0.84803 1.20400 1.21591 1.19080 1.21727 0.98527 0.98826 0.96237 1.22504 0.93237 0.95012 0.97589 0.93157 0.90604 0.91255 0.90729 0.90765 0.92420 0.91057 0.90850 0.86995 0.86850 0.91779 0.90996 0.89555 0.92263 0.90707 0.92394 0.92592 0.96942 0.97121 0.92884 0.92436 0.91885 0.93581 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 7.13 37.16 0.27 -0.95 16 2 C -0.09 -0.64 0.54 -154.51 -0.08 -0.72 16 3 C -0.18 -1.41 7.59 37.16 0.28 -1.12 16 4 C -0.10 -0.57 4.09 -26.74 -0.11 -0.68 16 5 C -0.04 -0.18 5.18 -29.52 -0.15 -0.33 16 6 C 0.21 1.75 15.43 -20.76 -0.32 1.43 16 7 N -0.45 -5.25 18.54 42.15 0.78 -4.46 16 8 C 0.06 0.58 4.81 -3.82 -0.02 0.56 16 9 N -0.53 -6.41 4.86 -234.67 -1.14 -7.55 16 10 C 0.01 0.19 3.31 -3.83 -0.01 0.18 16 11 C -0.11 -1.83 5.15 -26.66 -0.14 -1.97 16 12 C -0.07 -1.32 2.20 -90.50 -0.20 -1.52 16 13 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 14 C -0.51 -14.11 9.00 -34.44 -0.31 -14.42 16 15 H 0.07 2.12 7.33 -52.49 -0.38 1.73 16 16 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 17 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 22 C -0.12 -1.79 5.38 -26.65 -0.14 -1.94 16 23 C 0.04 0.55 4.87 -3.83 -0.02 0.53 16 24 H 0.05 0.29 5.63 -51.93 -0.29 0.00 16 25 H 0.08 0.65 5.17 -51.93 -0.27 0.39 16 26 H 0.07 0.58 5.93 -51.93 -0.31 0.27 16 27 H 0.07 0.68 4.22 -51.93 -0.22 0.46 16 28 H 0.07 0.69 5.35 -51.93 -0.28 0.41 16 29 H 0.06 0.36 5.66 -51.93 -0.29 0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.45 6.12 -51.93 -0.32 0.13 16 33 H 0.11 0.44 6.10 -51.93 -0.32 0.12 16 34 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 35 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16 36 H 0.09 1.02 4.72 -51.93 -0.24 0.77 16 37 H 0.06 0.72 2.94 -51.93 -0.15 0.57 16 38 H 0.07 1.45 7.06 -51.93 -0.37 1.08 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.55 4.78 -51.93 -0.25 0.30 16 47 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -31.45 335.68 -7.73 -39.18 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.38 Total: -2.87 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.15 Total: -19.51 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.41 Total: -38.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.45 -7.73 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575316169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.987 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds