Wall clock time and date at job start Tue Mar 31 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52993 * 109.47042 * 120.00211 * 2 1 3 5 5 C 1.52998 * 109.47391 * 300.00128 * 4 2 1 6 6 C 1.47201 * 109.47459 * 180.02562 * 5 4 2 7 7 N 4.86670 * 100.28953 * 104.87930 * 2 1 3 8 8 C 1.53003 * 109.47149 * 240.00153 * 2 1 3 9 9 N 1.46897 * 109.47034 * 66.27801 * 8 2 1 10 10 C 1.46848 * 111.00300 * 330.20546 * 9 8 2 11 11 C 1.53035 * 109.52546 * 185.84006 * 10 9 8 12 12 C 1.53112 * 109.27771 * 300.82034 * 11 10 9 13 13 C 1.53002 * 109.57691 * 177.59191 * 12 11 10 14 14 C 1.50706 * 109.47005 * 65.28355 * 13 12 11 15 15 H 1.07996 * 119.99952 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99986 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00010 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47165 * 89.99970 * 18 16 14 20 20 H 1.48496 * 109.47298 * 209.99807 * 18 16 14 21 21 H 1.48500 * 109.46950 * 329.99822 * 18 16 14 22 22 C 1.53120 * 109.16426 * 57.65709 * 12 11 10 23 23 C 1.46847 * 111.00132 * 94.41521 * 9 8 2 24 24 H 1.08999 * 109.47206 * 257.22228 * 1 2 3 25 25 H 1.09001 * 109.47066 * 17.22076 * 1 2 3 26 26 H 1.09000 * 109.46794 * 137.21946 * 1 2 3 27 27 H 1.08992 * 109.47662 * 223.95362 * 3 2 1 28 28 H 1.09002 * 109.47065 * 343.96156 * 3 2 1 29 29 H 1.09004 * 109.46877 * 103.95688 * 3 2 1 30 30 H 1.09004 * 109.47408 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47481 * 60.00430 * 4 2 1 32 32 H 1.09005 * 109.46944 * 300.00099 * 5 4 2 33 33 H 1.08997 * 109.47508 * 59.99855 * 5 4 2 34 34 H 1.08996 * 109.46863 * 186.27750 * 8 2 1 35 35 H 1.09001 * 109.46822 * 306.27714 * 8 2 1 36 36 H 1.08997 * 109.46382 * 305.86193 * 10 9 8 37 37 H 1.09004 * 109.45968 * 65.82467 * 10 9 8 38 38 H 1.09001 * 109.50231 * 180.88245 * 11 10 9 39 39 H 1.08990 * 109.50310 * 60.76516 * 11 10 9 40 40 H 1.09000 * 109.52982 * 297.75159 * 12 11 10 41 41 H 1.08997 * 109.47568 * 185.28448 * 13 12 11 42 42 H 1.09006 * 109.47028 * 305.28958 * 13 12 11 43 43 H 0.96999 * 120.00101 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.50800 * 182.40202 * 22 12 11 45 45 H 1.09004 * 109.50560 * 62.28167 * 22 12 11 46 46 H 1.08994 * 109.46322 * 294.17916 * 23 9 8 47 47 H 1.09006 * 109.46255 * 54.15853 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4984 6 6 2.0212 -0.6937 3.7003 7 7 2.3994 -1.2296 4.6279 8 6 2.0401 -0.7212 -1.2493 9 7 1.6780 0.0532 -2.4439 10 6 0.4360 0.8060 -2.2266 11 6 0.0126 1.4822 -3.5326 12 6 1.1268 2.4232 -3.9988 13 6 0.7362 3.0577 -5.3352 14 6 -0.4672 3.9432 -5.1381 15 1 -0.9089 4.0438 -4.1578 16 6 -1.0042 4.6250 -6.2095 17 7 -2.0540 5.3982 -6.0374 18 14 -0.2406 4.4505 -7.9054 19 1 -0.8813 3.3191 -8.6227 20 1 -0.4482 5.7045 -8.6732 21 1 1.2148 4.1892 -7.7683 22 6 2.4211 1.6233 -4.1711 23 6 2.7746 0.9430 -2.8466 24 1 -0.3633 -0.2273 1.0022 25 1 -0.3633 0.9816 -0.3042 26 1 -0.3633 -0.7543 -0.6980 27 1 2.8586 1.5385 -0.7132 28 1 1.2300 2.1143 -0.2839 29 1 2.3949 1.7024 0.9974 30 1 3.1300 -0.7209 1.2495 31 1 1.6768 -1.7490 1.2491 32 1 1.8934 1.0276 2.4985 33 1 0.4400 -0.0001 2.4985 34 1 3.1242 -0.8195 -1.1948 35 1 1.5879 -1.7113 -1.3072 36 1 -0.3492 0.1245 -1.8993 37 1 0.6003 1.5647 -1.4614 38 1 -0.9007 2.0536 -3.3670 39 1 -0.1652 0.7232 -4.2943 40 1 1.2784 3.2053 -3.2548 41 1 1.5679 3.6533 -5.7115 42 1 0.4965 2.2735 -6.0534 43 1 -2.4316 5.8781 -6.7911 44 1 3.2284 2.2954 -4.4618 45 1 2.2811 0.8665 -4.9430 46 1 2.9279 1.7010 -2.0785 47 1 3.6879 0.3609 -2.9700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575316169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:31 Heat of formation + Delta-G solvation = 30.444312 kcal Electronic energy + Delta-G solvation = -22638.460436 eV Core-core repulsion = 19628.402537 eV Total energy + Delta-G solvation = -3010.057899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51188 -38.49984 -37.38943 -35.45817 -34.08063 -32.33316 -31.15110 -30.20945 -28.29689 -27.81015 -25.55462 -24.01762 -23.48030 -21.83765 -20.37885 -19.69328 -18.83377 -18.37350 -16.63462 -16.39294 -16.34945 -16.22936 -15.74418 -15.37497 -15.10672 -14.76565 -14.61522 -14.36890 -14.09113 -14.03411 -13.72072 -13.48867 -13.34586 -13.09069 -12.89707 -12.67452 -12.47536 -12.41732 -12.24322 -12.09399 -11.95277 -11.77313 -11.71389 -11.52398 -11.46469 -11.29354 -11.12903 -11.06118 -10.74116 -10.67853 -10.37014 -8.76309 -8.24094 -6.25150 1.36546 1.37649 1.49541 1.82277 1.86239 2.39102 3.05553 3.11395 3.27901 3.82093 3.93945 4.06492 4.12419 4.19285 4.23634 4.36719 4.41658 4.55950 4.56951 4.63652 4.70249 4.79024 4.82311 4.90556 4.92134 4.96193 4.99786 5.08107 5.15649 5.17456 5.19536 5.24138 5.29577 5.32010 5.40790 5.43736 5.48926 5.53859 5.58957 5.63922 5.69317 5.77843 5.85028 6.36370 6.42030 6.49402 6.65797 6.82083 7.38498 8.92401 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.035255 B = 0.003426 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.020956 B = 8169.934494 C = 8553.493537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.079 4.079 3 C -0.178 4.178 4 C -0.094 4.094 5 C -0.032 4.032 6 C 0.237 3.763 7 N -0.510 5.510 8 C 0.063 3.937 9 N -0.542 5.542 10 C 0.027 3.973 11 C -0.103 4.103 12 C -0.067 4.067 13 C -0.008 4.008 14 C -0.513 4.513 15 H 0.038 0.962 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.249 1.249 22 C -0.110 4.110 23 C 0.048 3.952 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -12.541 12.912 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.081 4.081 3 C -0.234 4.234 4 C -0.134 4.134 5 C -0.071 4.071 6 C -0.079 4.079 7 N -0.188 5.188 8 C -0.064 4.064 9 N -0.266 5.266 10 C -0.100 4.100 11 C -0.141 4.141 12 C -0.086 4.086 13 C -0.045 4.045 14 C -0.551 4.551 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.595 5.595 18 Si 0.768 3.232 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.173 1.173 22 C -0.148 4.148 23 C -0.079 4.079 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.327 -13.568 13.817 21.947 hybrid contribution -0.327 1.220 -0.824 1.508 sum 10.000 -12.348 12.993 20.526 Atomic orbital electron populations 1.22898 0.94167 1.02561 1.02491 1.21018 0.96220 0.95658 0.95156 1.22823 1.01836 0.95315 1.03422 1.21510 1.01572 0.99573 0.90721 1.19819 1.03833 0.99531 0.83909 1.29894 0.91613 0.92222 0.94157 1.81271 1.11727 1.11944 1.13902 1.22462 1.00727 0.96880 0.86377 1.62104 1.03437 1.26843 1.34183 1.23578 0.93030 0.97374 0.95972 1.21535 0.97495 0.97135 0.97935 1.20929 0.95087 0.96103 0.96484 1.19598 0.94711 0.94743 0.95461 1.21469 1.12606 1.25747 0.95320 0.94403 1.25955 0.95279 0.94773 1.03414 1.70061 1.24829 1.31787 1.32778 0.85749 0.80397 0.77561 0.79484 1.19604 1.21183 1.17312 1.21650 0.96582 0.98430 0.98157 1.22475 0.93953 0.95535 0.95925 0.90961 0.91993 0.92035 0.91584 0.92367 0.90276 0.90576 0.90379 0.85277 0.85081 0.90590 0.90552 0.88269 0.91193 0.94021 0.93805 0.93508 0.97002 0.97330 0.92775 0.91828 0.92642 0.92605 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 7.13 71.98 0.51 -1.52 16 2 C -0.08 -0.88 0.54 -52.18 -0.03 -0.91 16 3 C -0.18 -2.30 7.59 71.98 0.55 -1.75 16 4 C -0.09 -0.71 4.09 30.59 0.13 -0.58 16 5 C -0.03 -0.20 5.18 28.79 0.15 -0.05 16 6 C 0.24 3.44 15.43 89.44 1.38 4.82 16 7 N -0.51 -11.46 18.54 20.01 0.37 -11.09 16 8 C 0.06 0.94 4.81 86.30 0.42 1.35 16 9 N -0.54 -11.91 4.86 -896.36 -4.35 -16.26 16 10 C 0.03 0.66 3.31 86.32 0.29 0.95 16 11 C -0.10 -3.65 5.15 30.64 0.16 -3.49 16 12 C -0.07 -2.52 2.20 -10.72 -0.02 -2.55 16 13 C -0.01 -0.36 3.52 29.85 0.11 -0.26 16 14 C -0.51 -29.25 9.00 25.60 0.23 -29.02 16 15 H 0.04 2.35 7.33 -2.91 -0.02 2.33 16 16 C 0.00 0.11 5.47 84.66 0.46 0.57 16 17 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 18 Si 0.94 44.93 27.47 68.60 1.88 46.81 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 22 C -0.11 -3.27 5.38 30.65 0.16 -3.10 16 23 C 0.05 1.08 4.87 86.33 0.42 1.50 16 24 H 0.07 0.58 5.63 -2.39 -0.01 0.56 16 25 H 0.06 0.96 5.17 -2.39 -0.01 0.95 16 26 H 0.06 0.88 5.93 -2.39 -0.01 0.87 16 27 H 0.07 0.99 4.22 -2.39 -0.01 0.98 16 28 H 0.06 0.97 5.35 -2.39 -0.01 0.95 16 29 H 0.08 0.67 5.66 -2.39 -0.01 0.66 16 30 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.48 6.12 -2.38 -0.01 0.46 16 33 H 0.13 0.46 6.10 -2.39 -0.01 0.45 16 34 H 0.08 0.99 7.57 -2.39 -0.02 0.97 16 35 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 36 H 0.10 2.23 4.72 -2.39 -0.01 2.22 16 37 H 0.07 1.63 2.94 -2.39 -0.01 1.62 16 38 H 0.04 1.71 7.06 -2.39 -0.02 1.69 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 42 H 0.01 0.40 7.57 -2.38 -0.02 0.38 16 43 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.06 1.18 4.78 -2.39 -0.01 1.16 16 47 H 0.08 1.56 7.91 -2.38 -0.02 1.54 16 Total: -1.00 -70.90 335.68 4.02 -66.88 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.91 Total: 7.26 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 4.91 Total: -34.03 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.68 Total: -86.93 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -70.90 4.02 -66.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575316169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.326 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds