Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 C 1.53001 * 109.47108 * 175.00390 * 3 2 1 5 5 C 1.53009 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46872 * 300.00048 * 5 4 3 7 7 C 1.53002 * 109.47144 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47515 * 174.99744 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.42103 * 114.42516 * 318.10562 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.52997 * 109.47535 * 59.99605 * 6 5 4 24 24 C 1.52995 * 109.47393 * 300.00132 * 23 6 5 25 25 H 1.09002 * 109.46926 * 300.00326 * 1 2 3 26 26 H 1.09000 * 109.47279 * 59.99297 * 1 2 3 27 27 H 1.08995 * 109.47646 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46926 * 239.99674 * 2 1 3 29 29 H 1.09000 * 109.47279 * 120.00702 * 2 1 3 30 30 H 1.09003 * 109.47231 * 55.00301 * 3 2 1 31 31 H 1.08996 * 109.47547 * 59.99936 * 4 3 2 32 32 H 1.09005 * 109.46876 * 299.99665 * 4 3 2 33 33 H 1.08996 * 109.47177 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46599 * 59.99913 * 5 4 3 35 35 H 1.09003 * 109.47536 * 299.99781 * 6 5 4 36 36 H 1.09002 * 109.47245 * 54.99431 * 7 6 5 37 37 H 1.08996 * 109.47056 * 294.99705 * 7 6 5 38 38 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 39 39 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 40 40 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 41 41 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 42 42 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46636 * 60.00133 * 23 6 5 45 45 H 1.09000 * 109.47383 * 179.97438 * 23 6 5 46 46 H 1.08996 * 109.46969 * 299.99966 * 24 23 6 47 47 H 1.09005 * 109.47093 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4441 0.1256 5 6 4.0750 2.8867 0.1263 6 6 3.6702 3.5712 -1.1807 7 6 4.1808 5.0136 -1.1804 8 7 3.8974 5.6337 -2.4816 9 6 4.3742 7.0226 -2.5178 10 6 4.0625 7.6333 -3.8855 11 1 2.9971 7.5340 -4.0935 12 6 4.8328 6.9300 -4.9241 13 7 5.4256 6.3852 -5.7280 14 6 4.4455 9.1146 -3.8819 15 6 4.0263 9.7450 -5.1850 16 1 3.5354 9.1489 -5.9400 17 6 4.2638 11.0844 -5.4107 18 7 4.8612 11.8103 -4.4911 19 14 3.7373 11.8675 -7.0228 20 1 2.3536 12.3901 -6.8905 21 1 4.6585 12.9839 -7.3548 22 1 3.7812 10.8511 -8.1046 23 6 2.1454 3.5695 -1.3064 24 6 1.6353 2.1270 -1.3071 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6055 1.9815 0.8419 31 1 3.9995 0.9051 -0.7162 32 1 3.8533 0.9567 1.0571 33 1 5.1613 2.8879 0.2162 34 1 3.6404 3.4252 0.9684 35 1 4.1047 3.0326 -2.0228 36 1 5.2561 5.0183 -1.0021 37 1 3.6795 5.5762 -0.3929 38 1 4.2976 5.0938 -3.2342 39 1 5.4508 7.0417 -2.3487 40 1 3.8740 7.5990 -1.7396 41 1 5.5247 9.2106 -3.7625 42 1 3.9424 9.6180 -3.0564 43 1 5.0287 12.7525 -4.6501 44 1 1.7108 4.1082 -0.4643 45 1 1.8570 4.0576 -2.2374 46 1 2.0699 1.5884 -2.1491 47 1 0.5489 2.1259 -1.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591727894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = -30.875510 kcal Electronic energy + Delta-G solvation = -21278.381098 eV Core-core repulsion = 18265.664172 eV Total energy + Delta-G solvation = -3012.716926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.37414 -37.38466 -35.62059 -34.14354 -33.25979 -31.58041 -30.81872 -29.51128 -26.75200 -24.88305 -23.07412 -22.79456 -22.01226 -21.63430 -20.40229 -19.89015 -16.71397 -16.57403 -15.88066 -15.20664 -15.06290 -14.81246 -14.55766 -14.30029 -13.98982 -13.69190 -13.35510 -13.17880 -13.09821 -12.64565 -12.51332 -12.26744 -12.08993 -11.92180 -11.80320 -11.69945 -11.30361 -11.25425 -11.18222 -11.11088 -10.99667 -10.83474 -10.71018 -10.56243 -10.49636 -10.26457 -10.08721 -9.99955 -9.51842 -9.21631 -8.45227 -8.26741 -6.09274 -4.12272 3.29599 3.36324 3.40987 3.56782 3.62396 4.22658 4.41714 4.42634 4.57352 4.61337 4.80141 4.82849 4.98441 5.03755 5.17862 5.24619 5.28723 5.35678 5.37568 5.41561 5.44583 5.50726 5.54214 5.67531 5.71674 5.73172 5.78436 5.79596 5.80344 5.87993 5.96016 6.04739 6.10605 6.15091 6.17564 6.25722 6.35649 6.42896 6.45196 6.55954 7.14890 7.43729 7.47789 7.53993 7.85914 8.23671 8.40962 8.92325 9.53089 11.01638 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.002662 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.133913 B =10515.831843 C =10706.791417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.084 4.084 7 C 0.062 3.938 8 N -0.690 5.690 9 C 0.068 3.932 10 C 0.007 3.993 11 H 0.111 0.889 12 C 0.242 3.758 13 N -0.478 5.478 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.106 4.106 24 C -0.116 4.116 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.336 0.664 39 H 0.033 0.967 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.040 0.960 43 H 0.262 0.738 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -20.192 13.132 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.106 4.106 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.103 4.103 7 C -0.067 4.067 8 N -0.321 5.321 9 C -0.062 4.062 10 C -0.015 4.015 11 H 0.128 0.872 12 C -0.075 4.075 13 N -0.155 5.155 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.143 4.143 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.760 -20.656 12.127 24.636 hybrid contribution 0.556 0.696 -0.685 1.123 sum -5.204 -19.961 11.443 23.589 Atomic orbital electron populations 1.21822 0.95998 1.01306 1.02024 1.21576 0.95866 0.96683 1.01654 1.21206 0.95373 0.95505 0.98541 1.21563 0.95329 0.96669 1.01434 1.21548 1.00296 0.95637 0.97692 1.21157 0.96722 0.94875 0.97550 1.22010 0.97892 0.94516 0.92323 1.60561 1.63840 1.03252 1.04427 1.22065 0.98183 0.88601 0.97381 1.19330 0.98614 0.96980 0.86554 0.87154 1.29408 0.92845 0.91423 0.93813 1.81102 1.11141 1.12632 1.10654 1.19163 0.97803 0.85167 0.98514 1.21152 1.39314 0.94574 1.01361 0.92510 1.24961 0.94954 0.97346 0.96773 1.69941 1.41857 1.07470 1.33789 0.86586 0.78514 0.79028 0.83923 1.20423 1.21176 1.19895 1.21481 0.94272 0.95654 1.02941 1.21666 1.00502 0.96331 0.96890 0.92854 0.92342 0.93120 0.92182 0.92354 0.91353 0.92171 0.92338 0.92259 0.91892 0.91599 0.95534 0.90814 0.84600 0.94864 0.89129 0.95788 0.94214 0.92808 0.92318 0.90486 0.92332 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.12 -0.84 5.40 -26.74 -0.14 -0.98 16 3 C -0.09 -0.67 2.19 -90.62 -0.20 -0.87 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.11 -0.95 5.20 -26.73 -0.14 -1.09 16 6 C -0.08 -0.81 2.33 -90.62 -0.21 -1.02 16 7 C 0.06 0.68 5.08 -3.82 -0.02 0.66 16 8 N -0.69 -9.02 5.95 -113.78 -0.68 -9.70 16 9 C 0.07 1.00 5.12 -3.83 -0.02 0.99 16 10 C 0.01 0.13 2.42 -93.41 -0.23 -0.09 16 11 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 12 C 0.24 4.92 12.98 -20.70 -0.27 4.65 16 13 N -0.48 -10.50 18.55 42.22 0.78 -9.72 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -14.07 8.60 -34.44 -0.30 -14.37 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.02 5.09 -26.73 -0.14 -1.16 16 24 C -0.12 -0.99 4.96 -26.73 -0.13 -1.13 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.34 4.62 7.81 -39.29 -0.31 4.32 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -28.64 372.06 -9.32 -37.96 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.96 Total: -1.78 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.79 Total: -13.87 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.84 Total: -44.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.64 -9.32 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591727894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.088 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds