Wall clock time and date at job start Tue Mar 31 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 C 1.53001 * 109.47108 * 175.00390 * 3 2 1 5 5 C 1.53009 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46872 * 300.00048 * 5 4 3 7 7 C 1.53002 * 109.47144 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47515 * 174.99744 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.42103 * 114.42516 * 318.10562 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.52997 * 109.47535 * 59.99605 * 6 5 4 24 24 C 1.52995 * 109.47393 * 300.00132 * 23 6 5 25 25 H 1.09002 * 109.46926 * 300.00326 * 1 2 3 26 26 H 1.09000 * 109.47279 * 59.99297 * 1 2 3 27 27 H 1.08995 * 109.47646 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46926 * 239.99674 * 2 1 3 29 29 H 1.09000 * 109.47279 * 120.00702 * 2 1 3 30 30 H 1.09003 * 109.47231 * 55.00301 * 3 2 1 31 31 H 1.08996 * 109.47547 * 59.99936 * 4 3 2 32 32 H 1.09005 * 109.46876 * 299.99665 * 4 3 2 33 33 H 1.08996 * 109.47177 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46599 * 59.99913 * 5 4 3 35 35 H 1.09003 * 109.47536 * 299.99781 * 6 5 4 36 36 H 1.09002 * 109.47245 * 54.99431 * 7 6 5 37 37 H 1.08996 * 109.47056 * 294.99705 * 7 6 5 38 38 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 39 39 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 40 40 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 41 41 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 42 42 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46636 * 60.00133 * 23 6 5 45 45 H 1.09000 * 109.47383 * 179.97438 * 23 6 5 46 46 H 1.08996 * 109.46969 * 299.99966 * 24 23 6 47 47 H 1.09005 * 109.47093 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4441 0.1256 5 6 4.0750 2.8867 0.1263 6 6 3.6702 3.5712 -1.1807 7 6 4.1808 5.0136 -1.1804 8 7 3.8974 5.6337 -2.4816 9 6 4.3742 7.0226 -2.5178 10 6 4.0625 7.6333 -3.8855 11 1 2.9971 7.5340 -4.0935 12 6 4.8328 6.9300 -4.9241 13 7 5.4256 6.3852 -5.7280 14 6 4.4455 9.1146 -3.8819 15 6 4.0263 9.7450 -5.1850 16 1 3.5354 9.1489 -5.9400 17 6 4.2638 11.0844 -5.4107 18 7 4.8612 11.8103 -4.4911 19 14 3.7373 11.8675 -7.0228 20 1 2.3536 12.3901 -6.8905 21 1 4.6585 12.9839 -7.3548 22 1 3.7812 10.8511 -8.1046 23 6 2.1454 3.5695 -1.3064 24 6 1.6353 2.1270 -1.3071 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6055 1.9815 0.8419 31 1 3.9995 0.9051 -0.7162 32 1 3.8533 0.9567 1.0571 33 1 5.1613 2.8879 0.2162 34 1 3.6404 3.4252 0.9684 35 1 4.1047 3.0326 -2.0228 36 1 5.2561 5.0183 -1.0021 37 1 3.6795 5.5762 -0.3929 38 1 4.2976 5.0938 -3.2342 39 1 5.4508 7.0417 -2.3487 40 1 3.8740 7.5990 -1.7396 41 1 5.5247 9.2106 -3.7625 42 1 3.9424 9.6180 -3.0564 43 1 5.0287 12.7525 -4.6501 44 1 1.7108 4.1082 -0.4643 45 1 1.8570 4.0576 -2.2374 46 1 2.0699 1.5884 -2.1491 47 1 0.5489 2.1259 -1.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591727894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:41 Heat of formation + Delta-G solvation = -44.839584 kcal Electronic energy + Delta-G solvation = -21278.986626 eV Core-core repulsion = 18265.664172 eV Total energy + Delta-G solvation = -3013.322454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.11330 -38.77479 -36.79535 -35.62586 -34.68411 -33.06231 -31.54374 -30.43882 -28.28877 -25.97420 -24.11717 -23.78777 -23.51201 -22.62993 -21.10877 -20.58918 -18.53524 -18.24930 -16.93952 -16.62468 -16.08885 -15.76079 -15.59412 -15.30474 -14.81995 -14.70125 -14.57512 -14.37264 -14.17461 -14.02937 -13.80534 -13.54102 -13.28755 -13.10488 -12.99884 -12.72226 -12.68148 -12.47582 -12.41457 -12.26098 -12.11558 -11.93090 -11.84834 -11.76616 -11.49357 -11.39431 -11.23490 -11.16296 -10.72824 -10.68143 -10.55255 -9.33549 -8.19988 -6.28188 1.40124 1.41617 1.50952 1.92411 1.94695 2.41134 3.14985 3.20008 3.24759 3.74760 3.90351 3.93842 4.07694 4.22287 4.29963 4.35635 4.43829 4.52263 4.61882 4.64343 4.67540 4.72976 4.74148 4.77322 4.85091 4.92713 4.96574 5.00424 5.01364 5.10471 5.16482 5.21196 5.25816 5.34920 5.35876 5.46008 5.46832 5.47129 5.57880 5.62215 5.66866 5.72830 5.78991 6.05894 6.21619 6.36905 6.74545 6.86827 7.40314 8.90949 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.002662 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.133913 B =10515.831843 C =10706.791417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.084 4.084 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.079 4.079 7 C 0.063 3.937 8 N -0.689 5.689 9 C 0.079 3.921 10 C 0.020 3.980 11 H 0.123 0.877 12 C 0.252 3.748 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.276 1.276 23 C -0.102 4.102 24 C -0.113 4.113 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.333 0.667 39 H 0.030 0.970 40 H 0.104 0.896 41 H 0.000 1.000 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -21.071 13.824 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.103 4.103 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.098 4.098 7 C -0.066 4.066 8 N -0.319 5.319 9 C -0.051 4.051 10 C -0.002 4.002 11 H 0.140 0.860 12 C -0.064 4.064 13 N -0.184 5.184 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.140 4.140 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.048 0.952 40 H 0.122 0.878 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.564 -21.549 12.825 25.921 hybrid contribution 0.804 0.950 -0.887 1.528 sum -5.760 -20.598 11.938 24.495 Atomic orbital electron populations 1.21821 0.95768 1.01669 1.01897 1.21559 0.96061 0.96148 1.01843 1.21169 0.95371 0.95868 0.97846 1.21553 0.95248 0.96206 1.01801 1.21520 1.00499 0.95941 0.96876 1.21104 0.96586 0.93999 0.98094 1.22077 0.98119 0.95222 0.91186 1.60555 1.63590 1.02348 1.05393 1.21908 0.98245 0.89737 0.95247 1.19232 0.98805 0.94089 0.88087 0.85959 1.29752 0.92292 0.90903 0.93481 1.81102 1.12063 1.13606 1.11600 1.18987 0.96053 0.88097 0.96925 1.21558 1.38752 0.94864 1.02561 0.92837 1.25729 0.95226 0.98145 0.99769 1.70035 1.43057 1.07777 1.35466 0.85674 0.78671 0.77996 0.80109 1.19112 1.20977 1.20143 1.21425 0.94280 0.96252 1.02050 1.21630 1.00560 0.95602 0.97293 0.92678 0.92761 0.92557 0.92447 0.91703 0.91325 0.92569 0.91327 0.92035 0.91437 0.92448 0.95433 0.90171 0.85031 0.95170 0.87770 0.98189 0.94525 0.92700 0.92228 0.92129 0.92927 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.13 16 2 C -0.12 -1.46 5.40 30.59 0.17 -1.30 16 3 C -0.08 -1.15 2.19 -10.79 -0.02 -1.18 16 4 C -0.11 -1.51 5.20 30.60 0.16 -1.35 16 5 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 6 C -0.08 -1.42 2.33 -10.80 -0.03 -1.45 16 7 C 0.06 1.28 5.08 86.30 0.44 1.72 16 8 N -0.69 -17.12 5.95 -513.90 -3.06 -20.18 16 9 C 0.08 2.24 5.12 86.30 0.44 2.68 16 10 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 11 H 0.12 4.17 8.14 -2.38 -0.02 4.15 16 12 C 0.25 10.13 12.98 89.42 1.16 11.29 16 13 N -0.51 -22.07 18.55 20.03 0.37 -21.70 16 14 C 0.04 1.77 4.42 29.85 0.13 1.90 16 15 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.56 5.46 84.66 0.46 1.03 16 18 N -0.92 -53.26 13.29 21.45 0.28 -52.97 16 19 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C -0.10 -1.87 5.09 30.59 0.16 -1.71 16 24 C -0.11 -1.81 4.96 30.59 0.15 -1.66 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.68 6.57 -2.39 -0.02 0.66 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.33 8.83 7.81 -89.69 -0.70 8.13 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.00 -0.02 8.14 -2.38 -0.02 -0.03 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 1.00 6.57 -2.38 -0.02 0.98 16 Total: -1.00 -59.81 372.06 4.10 -55.72 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.21 Total: 13.95 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.26 Total: -20.52 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.40 Total: -94.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -59.81 4.10 -55.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591727894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.878 kcal (2) G-P(sol) polarization free energy of solvation -59.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds