Wall clock time and date at job start Tue Mar 31 2020 00:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47176 * 2 1 4 4 C 1.53005 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47155 * 54.99568 * 4 3 2 6 6 C 1.53002 * 109.46919 * 295.00015 * 4 3 2 7 7 C 1.52997 * 109.47168 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47262 * 59.99976 * 7 6 4 9 9 C 1.53002 * 109.47049 * 300.00097 * 8 7 6 10 10 C 1.52996 * 109.47442 * 175.00033 * 4 3 2 11 11 H 1.08995 * 109.46917 * 299.99938 * 10 4 3 12 12 N 1.46903 * 109.47311 * 59.99769 * 10 4 3 13 13 C 1.46900 * 111.00425 * 205.00459 * 12 10 4 14 14 C 1.52994 * 109.47557 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46970 * 304.99717 * 14 13 12 16 16 C 1.47205 * 109.47251 * 64.99350 * 14 13 12 17 17 N 7.59597 * 114.99644 * 33.66918 * 2 1 3 18 18 C 1.52997 * 109.47404 * 184.99766 * 14 13 12 19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 H 1.08998 * 109.46806 * 60.00034 * 1 2 3 28 28 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47152 * 300.00521 * 1 2 3 30 30 H 1.08996 * 109.47152 * 239.99479 * 2 1 3 31 31 H 1.08998 * 109.46806 * 119.99966 * 2 1 3 32 32 H 1.09000 * 109.47515 * 60.00200 * 3 2 1 33 33 H 1.08998 * 109.47225 * 299.99709 * 3 2 1 34 34 H 1.09006 * 109.47409 * 299.99991 * 6 4 3 35 35 H 1.09000 * 109.47210 * 59.99985 * 6 4 3 36 36 H 1.09004 * 109.47434 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47086 * 299.99664 * 7 6 4 38 38 H 1.08998 * 109.47325 * 59.99834 * 8 7 6 39 39 H 1.08997 * 109.47322 * 180.02562 * 8 7 6 40 40 H 1.08998 * 109.46843 * 300.00033 * 9 8 7 41 41 H 1.09000 * 109.47210 * 179.97438 * 9 8 7 42 42 H 1.00905 * 111.00016 * 328.95542 * 12 10 4 43 43 H 1.09001 * 109.46898 * 59.99249 * 13 12 10 44 44 H 1.09009 * 109.46674 * 299.99940 * 13 12 10 45 45 H 1.09002 * 109.47153 * 54.99686 * 18 14 13 46 46 H 1.09001 * 109.46832 * 294.99876 * 18 14 13 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8426 6 6 4.0806 0.8326 1.3064 7 6 5.6106 0.8320 1.3056 8 6 6.1211 2.2687 1.1796 9 6 5.6106 2.8786 -0.1275 10 6 4.0801 2.8794 -0.1264 11 1 3.7164 3.3138 -1.0575 12 7 3.5909 3.6737 1.0085 13 6 3.5279 5.1004 0.6643 14 6 3.0159 5.8935 1.8683 15 1 2.0604 5.4825 2.1943 16 6 3.9906 5.8006 2.9675 17 7 4.7398 5.7296 3.8167 18 6 2.8319 7.3598 1.4723 19 6 2.2125 8.1160 2.6194 20 1 1.9743 7.6022 3.5389 21 6 1.9508 9.4640 2.4951 22 7 1.4107 10.1239 3.4963 23 14 2.3635 10.3528 0.9048 24 1 1.1964 10.2950 -0.0117 25 1 2.6905 11.7707 1.2008 26 1 3.5313 9.6993 0.2611 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.7176 1.4219 2.1485 35 1 3.7173 -0.1912 1.3960 36 1 5.9743 0.3979 2.2369 37 1 5.9732 0.2423 0.4636 38 1 5.7585 2.8583 2.0215 39 1 7.2111 2.2683 1.1785 40 1 5.9732 2.2889 -0.9695 41 1 5.9739 3.9023 -0.2171 42 1 2.6933 3.3381 1.3246 43 1 2.8513 5.2413 -0.1785 44 1 4.5233 5.4532 0.3940 45 1 2.1792 7.4219 0.6016 46 1 3.8016 7.7955 1.2313 47 1 1.2263 11.0722 3.4088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591733515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:26 Heat of formation + Delta-G solvation = -19.353155 kcal Electronic energy + Delta-G solvation = -22301.148769 eV Core-core repulsion = 19288.931490 eV Total energy + Delta-G solvation = -3012.217279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.71567 -36.90291 -35.08825 -34.49237 -33.28966 -31.72386 -30.87923 -29.37781 -26.78832 -25.78326 -23.26915 -22.38333 -21.92588 -21.38724 -20.64190 -18.93210 -17.14164 -16.85210 -15.74590 -15.51598 -15.18220 -14.78424 -14.37562 -14.24441 -13.61337 -13.55884 -13.40165 -13.26966 -12.88515 -12.67957 -12.47798 -12.28212 -12.13123 -11.99064 -11.85827 -11.63984 -11.37394 -11.31759 -11.20803 -11.18641 -10.94952 -10.77427 -10.70087 -10.47844 -10.39067 -10.07091 -9.95946 -9.83327 -9.68409 -9.31605 -8.61510 -8.24297 -6.10384 -4.10843 3.25602 3.34790 3.35862 3.74275 3.82638 4.23683 4.38520 4.46973 4.57923 4.71802 4.84354 4.92973 4.99003 5.07545 5.22657 5.24634 5.31838 5.32778 5.39189 5.48157 5.54622 5.55632 5.62264 5.65619 5.68980 5.75009 5.77391 5.87128 5.91152 5.93411 5.97708 6.06077 6.14613 6.20654 6.26765 6.29841 6.32038 6.34178 6.36024 6.62164 6.93092 7.13188 7.15499 7.52523 7.64570 8.41203 8.58151 8.93473 9.49656 11.02795 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.004183 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.539740 B = 6692.356073 C = 7361.246356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.086 4.086 5 H 0.071 0.929 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.112 4.112 9 C -0.106 4.106 10 C 0.093 3.907 11 H 0.043 0.957 12 N -0.684 5.684 13 C 0.064 3.936 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.254 3.746 17 N -0.471 5.471 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.264 1.264 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.342 0.658 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -20.462 -11.708 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.105 4.105 5 H 0.089 0.911 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.144 4.144 10 C -0.016 4.016 11 H 0.061 0.939 12 N -0.318 5.318 13 C -0.066 4.066 14 C -0.002 4.002 15 H 0.120 0.880 16 C -0.064 4.064 17 N -0.148 5.148 18 C -0.044 4.044 19 C -0.565 4.565 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.189 1.189 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.162 0.838 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.991 -20.345 -10.065 23.046 hybrid contribution -0.956 0.783 -1.660 2.070 sum 3.035 -19.562 -11.725 23.008 Atomic orbital electron populations 1.21790 0.96014 1.01383 1.01967 1.21539 0.95664 0.96882 1.01918 1.21736 0.95025 0.97023 1.02143 1.21319 0.94709 0.95713 0.98765 0.91075 1.21541 0.95448 0.99974 0.97698 1.21472 0.95801 0.97119 1.00796 1.21394 0.98738 0.95839 0.98983 1.21511 0.94628 1.00683 0.97564 1.21489 0.95422 0.92565 0.92170 0.93907 1.60548 1.33682 1.02350 1.35179 1.22131 1.01455 0.87229 0.95823 1.18939 0.93837 0.99604 0.87849 0.87980 1.28625 0.93288 0.90902 0.93552 1.80938 1.11668 1.10936 1.11234 1.19629 0.97794 0.88868 0.98095 1.21035 1.41135 0.94154 1.00187 0.90804 1.24989 0.94348 0.97425 0.96331 1.69907 1.43071 1.09229 1.31328 0.86822 0.79413 0.79224 0.84129 1.20084 1.21313 1.18866 0.92856 0.93037 0.92553 0.92373 0.91744 0.91469 0.92062 0.90888 0.92598 0.92602 0.92959 0.90240 0.93320 0.92567 0.92158 0.83765 0.93523 0.90617 0.95042 0.95705 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.12 -0.99 4.32 -26.73 -0.12 -1.11 16 4 C -0.09 -0.75 1.96 -90.62 -0.18 -0.93 16 5 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.11 -1.02 4.80 -26.73 -0.13 -1.15 16 7 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 8 C -0.11 -1.28 5.77 -26.73 -0.15 -1.43 16 9 C -0.11 -1.13 5.54 -26.71 -0.15 -1.28 16 10 C 0.09 0.95 2.30 -67.69 -0.16 0.80 16 11 H 0.04 0.44 7.80 -51.93 -0.40 0.03 16 12 N -0.68 -8.13 4.53 -106.70 -0.48 -8.61 16 13 C 0.06 0.87 4.85 -3.83 -0.02 0.85 16 14 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 15 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 16 C 0.25 5.20 13.66 -20.80 -0.28 4.92 16 17 N -0.47 -10.66 18.53 42.10 0.78 -9.88 16 18 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 19 C -0.53 -14.21 9.15 -34.44 -0.32 -14.52 16 20 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 22 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 23 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.07 0.59 6.42 -51.93 -0.33 0.25 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 35 H 0.06 0.48 6.57 -51.93 -0.34 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.12 7.60 -51.93 -0.39 0.73 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.71 7.46 -51.93 -0.39 0.32 16 42 H 0.34 3.80 6.09 -39.29 -0.24 3.56 16 43 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 44 H 0.08 1.07 7.44 -51.92 -0.39 0.69 16 45 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 46 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -30.21 362.38 -8.62 -38.83 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.63 Total: -0.31 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.85 Total: -15.16 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 1.07 Total: -44.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.21 -8.62 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591733515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.477 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds