Wall clock time and date at job start Tue Mar 31 2020 00:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47176 * 2 1 4 4 C 1.53005 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47155 * 54.99568 * 4 3 2 6 6 C 1.53002 * 109.46919 * 295.00015 * 4 3 2 7 7 C 1.52997 * 109.47168 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47262 * 59.99976 * 7 6 4 9 9 C 1.53002 * 109.47049 * 300.00097 * 8 7 6 10 10 C 1.52996 * 109.47442 * 175.00033 * 4 3 2 11 11 H 1.08995 * 109.46917 * 299.99938 * 10 4 3 12 12 N 1.46903 * 109.47311 * 59.99769 * 10 4 3 13 13 C 1.46900 * 111.00425 * 205.00459 * 12 10 4 14 14 C 1.52994 * 109.47557 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46970 * 304.99717 * 14 13 12 16 16 C 1.47205 * 109.47251 * 64.99350 * 14 13 12 17 17 N 7.59597 * 114.99644 * 33.66918 * 2 1 3 18 18 C 1.52997 * 109.47404 * 184.99766 * 14 13 12 19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 H 1.08998 * 109.46806 * 60.00034 * 1 2 3 28 28 H 1.08998 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47152 * 300.00521 * 1 2 3 30 30 H 1.08996 * 109.47152 * 239.99479 * 2 1 3 31 31 H 1.08998 * 109.46806 * 119.99966 * 2 1 3 32 32 H 1.09000 * 109.47515 * 60.00200 * 3 2 1 33 33 H 1.08998 * 109.47225 * 299.99709 * 3 2 1 34 34 H 1.09006 * 109.47409 * 299.99991 * 6 4 3 35 35 H 1.09000 * 109.47210 * 59.99985 * 6 4 3 36 36 H 1.09004 * 109.47434 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47086 * 299.99664 * 7 6 4 38 38 H 1.08998 * 109.47325 * 59.99834 * 8 7 6 39 39 H 1.08997 * 109.47322 * 180.02562 * 8 7 6 40 40 H 1.08998 * 109.46843 * 300.00033 * 9 8 7 41 41 H 1.09000 * 109.47210 * 179.97438 * 9 8 7 42 42 H 1.00905 * 111.00016 * 328.95542 * 12 10 4 43 43 H 1.09001 * 109.46898 * 59.99249 * 13 12 10 44 44 H 1.09009 * 109.46674 * 299.99940 * 13 12 10 45 45 H 1.09002 * 109.47153 * 54.99686 * 18 14 13 46 46 H 1.09001 * 109.46832 * 294.99876 * 18 14 13 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8426 6 6 4.0806 0.8326 1.3064 7 6 5.6106 0.8320 1.3056 8 6 6.1211 2.2687 1.1796 9 6 5.6106 2.8786 -0.1275 10 6 4.0801 2.8794 -0.1264 11 1 3.7164 3.3138 -1.0575 12 7 3.5909 3.6737 1.0085 13 6 3.5279 5.1004 0.6643 14 6 3.0159 5.8935 1.8683 15 1 2.0604 5.4825 2.1943 16 6 3.9906 5.8006 2.9675 17 7 4.7398 5.7296 3.8167 18 6 2.8319 7.3598 1.4723 19 6 2.2125 8.1160 2.6194 20 1 1.9743 7.6022 3.5389 21 6 1.9508 9.4640 2.4951 22 7 1.4107 10.1239 3.4963 23 14 2.3635 10.3528 0.9048 24 1 1.1964 10.2950 -0.0117 25 1 2.6905 11.7707 1.2008 26 1 3.5313 9.6993 0.2611 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 3.7176 1.4219 2.1485 35 1 3.7173 -0.1912 1.3960 36 1 5.9743 0.3979 2.2369 37 1 5.9732 0.2423 0.4636 38 1 5.7585 2.8583 2.0215 39 1 7.2111 2.2683 1.1785 40 1 5.9732 2.2889 -0.9695 41 1 5.9739 3.9023 -0.2171 42 1 2.6933 3.3381 1.3246 43 1 2.8513 5.2413 -0.1785 44 1 4.5233 5.4532 0.3940 45 1 2.1792 7.4219 0.6016 46 1 3.8016 7.7955 1.2313 47 1 1.2263 11.0722 3.4088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591733515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:26 Heat of formation + Delta-G solvation = -35.622894 kcal Electronic energy + Delta-G solvation = -22301.854278 eV Core-core repulsion = 19288.931490 eV Total energy + Delta-G solvation = -3012.922788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53905 -38.36740 -36.05089 -35.65341 -34.99168 -33.31750 -31.61809 -30.48587 -28.24486 -26.61517 -24.39944 -23.31682 -23.26015 -22.57764 -21.32891 -19.77307 -18.91504 -18.49624 -16.68621 -16.40597 -16.33366 -15.99062 -15.44260 -15.37441 -14.96759 -14.77983 -14.42010 -14.32104 -14.07702 -13.87661 -13.69370 -13.42655 -13.31833 -13.22244 -13.06982 -12.79031 -12.68594 -12.38186 -12.30952 -12.11114 -12.06479 -11.86063 -11.69927 -11.64215 -11.54474 -11.40605 -11.31540 -11.11914 -10.83620 -10.72812 -10.59312 -9.14450 -8.24556 -6.29993 1.41792 1.45322 1.55427 2.09793 2.17070 2.41029 3.11742 3.24643 3.38875 3.76746 3.84378 3.99251 4.19908 4.23662 4.30372 4.37230 4.41154 4.49074 4.59637 4.64162 4.68572 4.71049 4.75814 4.82157 4.85286 4.88318 4.94883 5.04322 5.05680 5.11444 5.16966 5.20923 5.25198 5.30516 5.38549 5.42102 5.46542 5.49748 5.51680 5.57036 5.59998 5.64533 5.74712 6.21021 6.29651 6.63665 6.77696 6.94199 7.34524 8.92501 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.004183 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.539740 B = 6692.356073 C = 7361.246356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.078 4.078 5 H 0.084 0.916 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.105 4.105 10 C 0.095 3.905 11 H 0.054 0.946 12 N -0.694 5.694 13 C 0.076 3.924 14 C 0.025 3.975 15 H 0.113 0.887 16 C 0.264 3.736 17 N -0.516 5.516 18 C -0.002 4.002 19 C -0.531 4.531 20 H 0.028 0.972 21 C 0.004 3.996 22 N -0.954 5.954 23 Si 0.949 3.051 24 H -0.256 1.256 25 H -0.295 1.295 26 H -0.239 1.239 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.346 0.654 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.024 0.976 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -21.836 -15.153 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.156 4.156 4 C -0.097 4.097 5 H 0.102 0.898 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.143 4.143 10 C -0.014 4.014 11 H 0.072 0.928 12 N -0.328 5.328 13 C -0.054 4.054 14 C 0.003 3.997 15 H 0.131 0.869 16 C -0.052 4.052 17 N -0.194 5.194 18 C -0.041 4.041 19 C -0.569 4.569 20 H 0.047 0.953 21 C -0.193 4.193 22 N -0.595 5.595 23 Si 0.771 3.229 24 H -0.181 1.181 25 H -0.222 1.222 26 H -0.162 1.162 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.168 0.832 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.057 -21.756 -13.522 25.935 hybrid contribution -0.984 1.150 -0.470 1.585 sum 3.073 -20.606 -13.992 25.096 Atomic orbital electron populations 1.21793 0.96034 1.01689 1.01708 1.21515 0.95628 0.96438 1.02162 1.21696 0.94489 0.97451 1.01934 1.21259 0.95045 0.94740 0.98620 0.89807 1.21503 0.95035 1.00363 0.97474 1.21454 0.96150 0.96089 1.01226 1.21336 0.98633 0.96516 0.98322 1.21522 0.95107 1.00146 0.97536 1.21530 0.94943 0.93184 0.91771 0.92813 1.60473 1.34241 1.01720 1.36404 1.21962 1.01634 0.87607 0.94175 1.19051 0.93815 0.98320 0.88499 0.86893 1.29344 0.92852 0.89671 0.93376 1.80932 1.13408 1.12302 1.12713 1.19574 0.97580 0.90224 0.96763 1.21404 1.40508 0.94556 1.00390 0.95345 1.26032 0.94313 0.98580 1.00386 1.70092 1.45455 1.09631 1.34322 0.85687 0.80584 0.77140 0.79448 1.18054 1.22204 1.16225 0.92712 0.92506 0.93211 0.91632 0.91952 0.92257 0.91650 0.92865 0.91467 0.93074 0.91424 0.93505 0.93503 0.90766 0.93434 0.83209 0.90875 0.90972 0.92032 0.95725 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.50 5.69 30.59 0.17 -1.33 16 3 C -0.12 -1.62 4.32 30.59 0.13 -1.49 16 4 C -0.08 -1.14 1.96 -10.79 -0.02 -1.16 16 5 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.11 -1.81 4.80 30.59 0.15 -1.66 16 7 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 8 C -0.11 -2.43 5.77 30.59 0.18 -2.25 16 9 C -0.10 -2.03 5.54 30.61 0.17 -1.86 16 10 C 0.10 1.68 2.30 44.93 0.10 1.78 16 11 H 0.05 0.88 7.80 -2.39 -0.02 0.86 16 12 N -0.69 -15.21 4.53 -491.49 -2.23 -17.44 16 13 C 0.08 1.87 4.85 86.30 0.42 2.29 16 14 C 0.03 0.84 2.35 -12.60 -0.03 0.81 16 15 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 16 C 0.26 10.90 13.66 89.46 1.22 12.13 16 17 N -0.52 -23.93 18.53 19.99 0.37 -23.56 16 18 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 19 C -0.53 -28.83 9.15 25.60 0.23 -28.60 16 20 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 21 C 0.00 0.20 5.47 84.66 0.46 0.66 16 22 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 23 Si 0.95 41.71 27.47 68.60 1.88 43.60 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 25 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.81 6.57 -2.39 -0.02 0.79 16 32 H 0.06 0.92 6.42 -2.39 -0.02 0.90 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 1.13 7.48 -2.38 -0.02 1.11 16 35 H 0.07 1.00 6.57 -2.39 -0.02 0.98 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.34 7.60 -2.39 -0.02 1.32 16 39 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.04 7.46 -2.39 -0.02 1.02 16 42 H 0.35 7.09 6.09 -89.69 -0.55 6.54 16 43 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 44 H 0.07 1.86 7.44 -2.38 -0.02 1.84 16 45 H 0.06 2.19 7.57 -2.39 -0.02 2.18 16 46 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -67.66 362.38 4.84 -62.82 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.32 Total: 17.43 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.19 Total: -23.79 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -1.56 Total: -100.07 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -67.66 4.84 -62.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591733515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.200 kcal (2) G-P(sol) polarization free energy of solvation -67.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds