Wall clock time and date at job start Tue Mar 31 2020 00:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46993 * 2 1 4 4 C 1.34943 * 126.03414 * 124.71725 * 3 2 1 5 5 C 1.35316 * 107.74531 * 180.25880 * 4 3 2 6 6 C 1.50700 * 126.04188 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47139 * 270.00370 * 6 5 4 8 8 C 1.46960 * 110.99725 * 293.79384 * 7 6 5 9 9 C 1.53053 * 109.36295 * 176.81002 * 8 7 6 10 10 N 1.46960 * 109.35983 * 58.40633 * 9 8 7 11 11 C 1.46907 * 110.99632 * 176.81226 * 10 9 8 12 12 C 1.50702 * 109.46901 * 293.79507 * 11 10 9 13 13 H 1.07998 * 120.00213 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00036 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99845 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99817 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46941 * 89.99930 * 16 14 12 18 18 H 1.48501 * 109.47065 * 210.00143 * 16 14 12 19 19 H 1.48501 * 109.47101 * 329.99866 * 16 14 12 20 20 C 1.46954 * 110.88373 * 300.67646 * 10 9 8 21 21 C 1.46960 * 110.99757 * 169.99930 * 7 6 5 22 22 C 1.39873 * 107.91987 * 0.02562 * 5 4 3 23 23 N 1.30832 * 108.20166 * 0.02562 * 22 5 4 24 24 H 1.09005 * 109.46819 * 300.00333 * 1 2 3 25 25 H 1.08996 * 109.46944 * 59.99848 * 1 2 3 26 26 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46549 * 239.99643 * 2 1 3 28 28 H 1.08996 * 109.46944 * 120.00152 * 2 1 3 29 29 H 1.07996 * 126.13000 * 0.26422 * 4 3 2 30 30 H 1.09001 * 109.46889 * 30.00178 * 6 5 4 31 31 H 1.09003 * 109.47064 * 149.99725 * 6 5 4 32 32 H 1.08994 * 109.49024 * 296.78193 * 8 7 6 33 33 H 1.09005 * 109.48806 * 56.85148 * 8 7 6 34 34 H 1.08996 * 109.49235 * 298.44157 * 9 8 7 35 35 H 1.08996 * 109.48903 * 178.37102 * 9 8 7 36 36 H 1.09000 * 109.47266 * 53.79852 * 11 10 9 37 37 H 1.09000 * 109.46665 * 173.80165 * 11 10 9 38 38 H 0.97000 * 119.99554 * 179.97438 * 15 14 12 39 39 H 1.09006 * 109.48717 * 299.35974 * 20 10 9 40 40 H 1.08995 * 109.49027 * 179.29183 * 20 10 9 41 41 H 1.08996 * 109.48915 * 303.15257 * 21 7 6 42 42 H 1.09001 * 109.49214 * 63.22053 * 21 7 6 43 43 H 1.07999 * 125.89561 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0646 3.2160 0.5513 6 6 3.9433 4.2039 1.2745 7 7 3.1562 4.8989 2.3018 8 6 2.1188 5.7411 1.6902 9 6 1.2723 6.3837 2.7916 10 7 2.1402 7.1783 3.6720 11 6 1.3530 7.8733 4.6994 12 6 0.4715 8.9051 4.0441 13 1 0.4934 9.0317 2.9718 14 6 -0.3631 9.6876 4.8137 15 7 -1.1327 10.5878 4.2418 16 14 -0.4005 9.4693 6.6685 17 1 0.6060 10.3649 7.2928 18 1 -1.7522 9.8110 7.1800 19 1 -0.0854 8.0582 7.0073 20 6 3.1777 6.3362 4.2836 21 6 4.0241 5.6935 3.1822 22 6 2.3073 3.4742 -0.5960 23 7 1.6790 2.3753 -0.9268 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.3138 1.4144 1.7397 30 1 4.7715 3.6757 1.7468 31 1 4.3348 4.9310 0.5629 32 1 2.5895 6.5209 1.0916 33 1 1.4815 5.1279 1.0530 34 1 0.7799 5.6044 3.3732 35 1 0.5204 7.0316 2.3410 36 1 0.7336 7.1519 5.2324 37 1 2.0260 8.3641 5.4024 38 1 -1.7201 11.1380 4.7832 39 1 2.7069 5.5563 4.8822 40 1 3.8148 6.9494 4.9208 41 1 4.7760 5.0456 3.6327 42 1 4.5165 6.4728 2.6006 43 1 2.2503 4.4180 -1.1180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595392306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:42 Heat of formation + Delta-G solvation = 94.344910 kcal Electronic energy + Delta-G solvation = -21722.911816 eV Core-core repulsion = 18612.084511 eV Total energy + Delta-G solvation = -3110.827305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27755 -38.64852 -35.48866 -34.38296 -32.45391 -30.86014 -30.47804 -30.01576 -28.23255 -25.86155 -24.14845 -23.37539 -22.87293 -21.02990 -20.71308 -20.03326 -19.10903 -17.05206 -16.75886 -15.90047 -15.50149 -14.81144 -14.51141 -14.38683 -14.35171 -14.16757 -14.01664 -13.46066 -13.34980 -13.01369 -12.81755 -12.37215 -12.32712 -12.27306 -11.88300 -11.78020 -11.54999 -11.37460 -10.89417 -10.75916 -10.65524 -10.43045 -10.28420 -9.99611 -9.78208 -9.43277 -9.22447 -8.54017 -8.47568 -8.00309 -7.29920 -6.02101 -3.99069 1.85871 2.42038 2.74705 3.30853 3.38081 3.40864 4.25850 4.34654 4.45081 4.66274 4.74757 4.85168 4.87146 4.93842 5.19132 5.27035 5.30382 5.37813 5.39987 5.44586 5.60358 5.68653 5.71947 5.78189 5.86163 5.94169 5.96033 6.09698 6.14252 6.22309 6.39078 6.58832 6.61665 6.71979 6.89681 6.95802 7.02848 7.33218 7.38515 7.64345 7.67136 7.97187 8.11530 8.70225 9.06386 9.59971 11.11054 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.003625 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.590926 B = 7722.845939 C = 8179.792843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.377 5.377 4 C 0.070 3.930 5 C -0.225 4.225 6 C 0.133 3.867 7 N -0.537 5.537 8 C 0.060 3.940 9 C 0.068 3.932 10 N -0.529 5.529 11 C 0.163 3.837 12 C -0.508 4.508 13 H 0.080 0.920 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.054 3.946 21 C 0.061 3.939 22 C 0.055 3.945 23 N -0.298 5.298 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.090 0.910 36 H -0.012 1.012 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -21.122 -6.561 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.160 5.160 4 C -0.077 4.077 5 C -0.236 4.236 6 C 0.004 3.996 7 N -0.262 5.262 8 C -0.067 4.067 9 C -0.060 4.060 10 N -0.254 5.254 11 C 0.036 3.964 12 C -0.546 4.546 13 H 0.098 0.902 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.075 4.075 21 C -0.067 4.067 22 C -0.132 4.132 23 N -0.119 5.119 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.188 0.812 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.006 0.994 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.643 -21.689 -7.341 24.475 hybrid contribution 0.392 0.385 1.714 1.800 sum 9.035 -21.305 -5.627 23.816 Atomic orbital electron populations 1.22060 0.93806 1.02689 1.03844 1.21627 0.96126 0.77679 1.03396 1.48633 1.35882 1.10039 1.21441 1.22269 0.95291 0.94765 0.95374 1.19917 1.08642 0.94725 1.00360 1.20242 0.93288 0.93889 0.92152 1.62224 1.14009 1.30144 1.19839 1.22222 0.93782 0.94225 0.96521 1.22016 0.94888 0.95074 0.94066 1.62110 1.14644 1.27179 1.21487 1.20149 0.92246 0.93583 0.90400 1.21042 1.20446 1.16893 0.96236 0.90175 1.24901 0.95244 0.94955 0.98269 1.69898 1.25835 1.22660 1.35637 0.86862 0.77455 0.78934 0.86521 1.20171 1.21243 1.19285 1.22106 0.94997 0.95122 0.95245 1.22124 0.94616 0.95181 0.94766 1.23811 0.95619 0.97285 0.96447 1.77295 1.23529 0.96995 1.14039 0.91895 0.91073 0.90882 0.90088 0.88855 0.81248 0.90764 0.94227 0.94343 0.90874 0.95556 0.89209 0.99417 0.95889 0.92713 0.95257 0.91109 0.91234 0.94207 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.10 37.16 0.38 -0.87 16 2 C 0.13 0.96 7.23 -4.04 -0.03 0.93 16 3 N -0.38 -4.14 3.68 -61.37 -0.23 -4.37 16 4 C 0.07 0.74 11.36 -17.23 -0.20 0.55 16 5 C -0.22 -2.68 4.96 -105.05 -0.52 -3.20 16 6 C 0.13 1.56 5.45 -4.98 -0.03 1.54 16 7 N -0.54 -7.83 4.70 -235.90 -1.11 -8.94 16 8 C 0.06 0.99 5.38 -3.76 -0.02 0.97 16 9 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 10 N -0.53 -11.43 4.70 -235.90 -1.11 -12.54 16 11 C 0.16 4.04 3.79 -4.97 -0.02 4.03 16 12 C -0.51 -14.64 9.03 -34.44 -0.31 -14.95 16 13 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 16 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 20 C 0.05 0.96 5.61 -3.77 -0.02 0.94 16 21 C 0.06 0.89 5.61 -3.76 -0.02 0.87 16 22 C 0.05 0.69 10.55 -17.37 -0.18 0.51 16 23 N -0.30 -3.97 12.42 30.62 0.38 -3.59 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 31 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.15 6.15 -51.93 -0.32 0.84 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 2.01 6.79 -51.93 -0.35 1.65 16 36 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 37 H 0.02 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -33.17 342.49 -9.20 -42.37 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.31 Total: -2.67 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.09 Total: -5.45 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -1.29 Total: -56.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.17 -9.20 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595392306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.717 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds