Wall clock time and date at job start Tue Mar 31 2020 00:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46993 * 2 1 4 4 C 1.34943 * 126.03414 * 124.71725 * 3 2 1 5 5 C 1.35316 * 107.74531 * 180.25880 * 4 3 2 6 6 C 1.50700 * 126.04188 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47139 * 270.00370 * 6 5 4 8 8 C 1.46960 * 110.99725 * 293.79384 * 7 6 5 9 9 C 1.53053 * 109.36295 * 176.81002 * 8 7 6 10 10 N 1.46960 * 109.35983 * 58.40633 * 9 8 7 11 11 C 1.46907 * 110.99632 * 176.81226 * 10 9 8 12 12 C 1.50702 * 109.46901 * 293.79507 * 11 10 9 13 13 H 1.07998 * 120.00213 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00036 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99845 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99817 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.46941 * 89.99930 * 16 14 12 18 18 H 1.48501 * 109.47065 * 210.00143 * 16 14 12 19 19 H 1.48501 * 109.47101 * 329.99866 * 16 14 12 20 20 C 1.46954 * 110.88373 * 300.67646 * 10 9 8 21 21 C 1.46960 * 110.99757 * 169.99930 * 7 6 5 22 22 C 1.39873 * 107.91987 * 0.02562 * 5 4 3 23 23 N 1.30832 * 108.20166 * 0.02562 * 22 5 4 24 24 H 1.09005 * 109.46819 * 300.00333 * 1 2 3 25 25 H 1.08996 * 109.46944 * 59.99848 * 1 2 3 26 26 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46549 * 239.99643 * 2 1 3 28 28 H 1.08996 * 109.46944 * 120.00152 * 2 1 3 29 29 H 1.07996 * 126.13000 * 0.26422 * 4 3 2 30 30 H 1.09001 * 109.46889 * 30.00178 * 6 5 4 31 31 H 1.09003 * 109.47064 * 149.99725 * 6 5 4 32 32 H 1.08994 * 109.49024 * 296.78193 * 8 7 6 33 33 H 1.09005 * 109.48806 * 56.85148 * 8 7 6 34 34 H 1.08996 * 109.49235 * 298.44157 * 9 8 7 35 35 H 1.08996 * 109.48903 * 178.37102 * 9 8 7 36 36 H 1.09000 * 109.47266 * 53.79852 * 11 10 9 37 37 H 1.09000 * 109.46665 * 173.80165 * 11 10 9 38 38 H 0.97000 * 119.99554 * 179.97438 * 15 14 12 39 39 H 1.09006 * 109.48717 * 299.35974 * 20 10 9 40 40 H 1.08995 * 109.49027 * 179.29183 * 20 10 9 41 41 H 1.08996 * 109.48915 * 303.15257 * 21 7 6 42 42 H 1.09001 * 109.49214 * 63.22053 * 21 7 6 43 43 H 1.07999 * 125.89561 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0646 3.2160 0.5513 6 6 3.9433 4.2039 1.2745 7 7 3.1562 4.8989 2.3018 8 6 2.1188 5.7411 1.6902 9 6 1.2723 6.3837 2.7916 10 7 2.1402 7.1783 3.6720 11 6 1.3530 7.8733 4.6994 12 6 0.4715 8.9051 4.0441 13 1 0.4934 9.0317 2.9718 14 6 -0.3631 9.6876 4.8137 15 7 -1.1327 10.5878 4.2418 16 14 -0.4005 9.4693 6.6685 17 1 0.6060 10.3649 7.2928 18 1 -1.7522 9.8110 7.1800 19 1 -0.0854 8.0582 7.0073 20 6 3.1777 6.3362 4.2836 21 6 4.0241 5.6935 3.1822 22 6 2.3073 3.4742 -0.5960 23 7 1.6790 2.3753 -0.9268 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.3138 1.4144 1.7397 30 1 4.7715 3.6757 1.7468 31 1 4.3348 4.9310 0.5629 32 1 2.5895 6.5209 1.0916 33 1 1.4815 5.1279 1.0530 34 1 0.7799 5.6044 3.3732 35 1 0.5204 7.0316 2.3410 36 1 0.7336 7.1519 5.2324 37 1 2.0260 8.3641 5.4024 38 1 -1.7201 11.1380 4.7832 39 1 2.7069 5.5563 4.8822 40 1 3.8148 6.9494 4.9208 41 1 4.7760 5.0456 3.6327 42 1 4.5165 6.4728 2.6006 43 1 2.2503 4.4180 -1.1180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595392306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:41 Heat of formation + Delta-G solvation = 69.946011 kcal Electronic energy + Delta-G solvation = -21723.969832 eV Core-core repulsion = 18612.084511 eV Total energy + Delta-G solvation = -3111.885320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -42.12214 -40.03028 -36.85345 -35.26272 -34.50989 -32.03665 -31.76180 -30.96809 -29.83638 -27.26362 -25.06213 -24.74841 -24.05518 -22.83632 -21.56288 -20.90639 -20.53120 -18.94518 -17.82102 -17.22065 -16.45562 -16.20742 -15.96897 -15.81360 -15.45551 -15.40265 -15.10988 -14.91609 -14.64583 -14.41780 -13.92078 -13.73537 -13.47552 -13.15823 -13.10031 -12.94250 -12.75524 -12.64078 -12.31593 -12.23755 -12.13291 -11.99289 -11.82088 -11.54607 -11.31535 -11.25949 -10.78101 -10.29245 -9.40396 -9.14395 -8.98559 -8.28595 -6.32182 1.03614 1.34325 1.36202 1.47102 1.71616 1.83430 2.34389 3.04085 3.20134 3.25539 3.61533 4.03442 4.06347 4.11331 4.15329 4.24686 4.26661 4.37197 4.40919 4.41409 4.56666 4.59516 4.69748 4.78711 4.80862 4.83602 4.86671 4.94042 4.98997 5.02223 5.04393 5.13199 5.20474 5.23603 5.30795 5.52955 5.73953 5.95938 6.12918 6.23214 6.26250 6.39766 6.67405 6.73728 6.80742 7.31498 8.88107 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.003625 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.590926 B = 7722.845939 C = 8179.792843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 N -0.378 5.378 4 C 0.077 3.923 5 C -0.244 4.244 6 C 0.139 3.861 7 N -0.540 5.540 8 C 0.077 3.923 9 C 0.073 3.927 10 N -0.545 5.545 11 C 0.173 3.827 12 C -0.517 4.517 13 H 0.036 0.964 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.950 3.050 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.254 1.254 20 C 0.051 3.949 21 C 0.067 3.933 22 C 0.040 3.960 23 N -0.333 5.333 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.204 0.796 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.052 0.948 36 H -0.017 1.017 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 -23.738 -4.713 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 N -0.161 5.161 4 C -0.070 4.070 5 C -0.256 4.256 6 C 0.011 3.989 7 N -0.265 5.265 8 C -0.051 4.051 9 C -0.055 4.055 10 N -0.270 5.270 11 C 0.046 3.954 12 C -0.556 4.556 13 H 0.054 0.946 14 C -0.190 4.190 15 N -0.589 5.589 16 Si 0.773 3.227 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.178 1.178 20 C -0.077 4.077 21 C -0.061 4.061 22 C -0.145 4.145 23 N -0.155 5.155 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.144 0.856 29 H 0.220 0.780 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.001 0.999 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.733 -24.333 -5.518 27.161 hybrid contribution -0.268 1.140 1.033 1.561 sum 10.465 -23.193 -4.484 25.837 Atomic orbital electron populations 1.22020 0.94305 1.03818 1.01811 1.22000 0.95742 0.76216 1.05606 1.48978 1.35518 1.10778 1.20795 1.22799 0.94262 0.94462 0.95512 1.20024 1.09441 0.95578 1.00515 1.20276 0.93395 0.93674 0.91537 1.62224 1.14235 1.29336 1.20710 1.21937 0.94152 0.94179 0.94833 1.21894 0.94925 0.93981 0.94732 1.62034 1.14968 1.28862 1.21123 1.19908 0.91961 0.92692 0.90861 1.21260 1.21589 1.18186 0.94527 0.94605 1.25871 0.94598 0.94400 1.04156 1.70056 1.26921 1.23940 1.37971 0.85679 0.77964 0.79771 0.79300 1.18648 1.20683 1.17775 1.22266 0.94091 0.94803 0.96540 1.22134 0.94403 0.95707 0.93817 1.24001 0.95931 0.97454 0.97155 1.77236 1.24663 0.97932 1.15669 0.93519 0.93409 0.88185 0.88928 0.85564 0.77973 0.88040 0.94225 0.95132 0.90452 0.96408 0.92931 0.99926 0.95075 0.92409 0.95287 0.90010 0.87414 0.94598 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.10 71.98 0.73 -1.49 16 2 C 0.12 1.49 7.23 86.38 0.62 2.11 16 3 N -0.38 -7.62 3.68 -348.07 -1.28 -8.90 16 4 C 0.08 1.42 11.36 83.54 0.95 2.37 16 5 C -0.24 -5.35 4.96 -20.14 -0.10 -5.45 16 6 C 0.14 2.87 5.45 85.56 0.47 3.34 16 7 N -0.54 -14.51 4.70 -900.25 -4.23 -18.75 16 8 C 0.08 2.55 5.38 86.31 0.46 3.01 16 9 C 0.07 3.05 5.43 86.31 0.47 3.52 16 10 N -0.54 -23.59 4.70 -900.25 -4.23 -27.82 16 11 C 0.17 8.62 3.79 85.56 0.32 8.95 16 12 C -0.52 -30.91 9.03 25.60 0.23 -30.68 16 13 H 0.04 2.39 7.37 -2.91 -0.02 2.37 16 14 C 0.01 0.41 5.47 84.65 0.46 0.88 16 15 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 16 Si 0.95 44.94 27.47 68.60 1.88 46.83 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 20 C 0.05 1.70 5.61 86.31 0.48 2.18 16 21 C 0.07 1.75 5.61 86.31 0.48 2.23 16 22 C 0.04 1.01 10.55 85.24 0.90 1.90 16 23 N -0.33 -8.80 12.42 -57.02 -0.71 -9.51 16 24 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.13 0.70 8.07 -2.39 -0.02 0.68 16 29 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 2.48 6.15 -2.38 -0.01 2.46 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 2.53 6.79 -2.39 -0.02 2.51 16 36 H -0.02 -0.85 7.18 -2.39 -0.02 -0.87 16 37 H 0.03 1.50 7.45 -2.39 -0.02 1.48 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.04 16 39 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 41 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -74.73 342.49 -0.88 -75.61 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.91 Total: 9.83 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 6.48 Total: -7.12 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -10.15 Total: -125.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -74.73 -0.88 -75.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595392306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.553 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.11 seconds