Wall clock time and date at job start Tue Mar 31 2020 00:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.52940 * 109.41307 * 176.56463 * 14 13 12 16 16 C 1.53171 * 109.45035 * 176.91326 * 15 14 13 17 17 C 1.53159 * 108.88622 * 56.56678 * 16 15 14 18 18 C 1.52846 * 117.68267 * 91.49565 * 17 16 15 19 19 C 1.52806 * 117.75068 * 160.37719 * 17 16 15 20 20 C 1.53154 * 115.00181 * 306.06072 * 17 16 15 21 21 C 1.52942 * 109.40874 * 56.20117 * 14 13 12 22 22 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 23 23 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 24 24 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 26 26 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 27 27 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 28 28 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 29 29 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 30 30 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 31 31 H 1.09001 * 109.41271 * 296.35039 * 14 13 12 32 32 H 1.09006 * 109.47394 * 296.91055 * 15 14 13 33 33 H 1.09001 * 109.47425 * 56.91522 * 15 14 13 34 34 H 1.08996 * 109.57183 * 296.74734 * 16 15 14 35 35 H 1.09009 * 109.66621 * 176.44174 * 16 15 14 36 36 H 1.08994 * 117.50312 * 215.22712 * 18 17 16 37 37 H 1.09011 * 117.50241 * 0.27048 * 18 17 16 38 38 H 1.09004 * 117.50226 * 359.84686 * 19 17 16 39 39 H 1.08996 * 117.50181 * 144.88715 * 19 17 16 40 40 H 1.08998 * 109.56629 * 294.11419 * 20 17 16 41 41 H 1.08997 * 109.66298 * 173.81800 * 20 17 16 42 42 H 1.08996 * 109.47473 * 303.08607 * 21 14 13 43 43 H 1.09009 * 109.47151 * 63.09568 * 21 14 13 44 44 H 1.09002 * 109.48908 * 180.71202 * 22 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 22 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 23 10 9 47 47 H 1.09004 * 109.48943 * 56.84596 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 4.9861 -7.2359 -2.2983 16 6 6.0361 -8.3508 -2.2728 17 6 5.3488 -9.6709 -1.9111 18 6 4.8359 -10.5419 -3.0576 19 6 6.0723 -10.9698 -2.2639 20 6 4.5279 -9.6403 -0.6185 21 6 3.5248 -8.4852 -0.6955 22 6 4.0043 -4.7809 -1.1842 23 6 2.9687 -3.6562 -1.2558 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 0.9734 -4.8433 1.1788 28 1 0.8254 -5.0915 -0.5780 29 1 3.2356 -5.8353 1.1420 30 1 2.0486 -6.9718 0.4571 31 1 5.0104 -7.0230 -0.1567 32 1 4.2580 -7.4402 -3.0834 33 1 5.4742 -6.2814 -2.4948 34 1 6.7967 -8.1191 -1.5273 35 1 6.5017 -8.4387 -3.2545 36 1 3.9139 -11.0994 -2.8926 37 1 4.9907 -10.1789 -4.0737 38 1 7.0406 -10.8884 -2.7579 39 1 5.9638 -11.8090 -1.5769 40 1 5.1923 -9.4908 0.2325 41 1 3.9918 -10.5822 -0.5021 42 1 2.9770 -8.4164 0.2443 43 1 2.8251 -8.6653 -1.5117 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:37 Heat of formation + Delta-G solvation = 22.680792 kcal Electronic energy + Delta-G solvation = -22459.477821 eV Core-core repulsion = 19449.083270 eV Total energy + Delta-G solvation = -3010.394551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96903 -38.34830 -35.78017 -33.22437 -32.03928 -31.48624 -30.09515 -28.24763 -26.23634 -24.35477 -23.79504 -22.64078 -21.91069 -21.57203 -20.51241 -19.16289 -18.70910 -16.33720 -16.27837 -15.54684 -15.13767 -14.63494 -14.58359 -14.31052 -14.07443 -13.65860 -13.51123 -13.42806 -13.27609 -12.63851 -12.60140 -12.11486 -11.93964 -11.92517 -11.76043 -11.50300 -11.21216 -11.07049 -10.82539 -10.81165 -10.72680 -10.61826 -10.49961 -10.21851 -10.09394 -9.86932 -9.76492 -9.64019 -9.12337 -8.42049 -8.02666 -7.17728 -6.00636 -4.01859 3.31984 3.39244 3.44105 3.53735 4.08772 4.36530 4.44222 4.54603 4.67346 4.77931 4.89904 4.98824 5.14587 5.21176 5.34760 5.36762 5.37695 5.38433 5.42281 5.57466 5.61621 5.63837 5.67865 5.78543 5.79426 5.84242 5.86608 5.90764 5.92084 5.97399 6.11768 6.12810 6.15044 6.20139 6.35079 6.36312 6.50478 6.66627 6.74244 7.26062 7.36394 7.41093 7.45206 7.83255 8.12766 8.25393 8.59155 9.06195 9.62339 11.10345 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.041882 B = 0.003249 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.385921 B = 8615.995370 C = 9003.752814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.079 4.079 17 C -0.119 4.119 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.079 4.079 21 C -0.111 4.111 22 C 0.056 3.944 23 C 0.068 3.932 24 H 0.260 0.740 25 H -0.009 1.009 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.028 0.972 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 -20.570 -3.879 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.020 4.020 15 C -0.148 4.148 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.210 4.210 19 C -0.217 4.217 20 C -0.117 4.117 21 C -0.149 4.149 22 C -0.072 4.072 23 C -0.061 4.061 24 H 0.070 0.930 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.219 -20.426 -3.870 23.165 hybrid contribution 0.317 0.929 0.004 0.981 sum 10.537 -19.497 -3.866 22.497 Atomic orbital electron populations 1.69968 1.06063 1.26621 1.51207 1.24995 0.94855 0.99305 0.95517 0.86456 0.80076 0.83494 0.77484 1.19675 1.21124 1.21038 1.21200 0.93477 0.89974 1.49766 0.91897 1.19700 0.90072 0.87359 0.96059 1.62279 1.28109 1.02751 1.33275 1.22063 0.94806 0.90051 1.00305 1.22213 0.96190 0.98482 0.90067 1.62190 1.25926 1.03074 1.34865 1.21527 0.92872 0.90964 0.96627 1.21596 0.97683 0.98023 0.97457 1.21137 0.97173 0.92385 1.01035 1.21506 1.01847 0.91841 0.96673 1.22997 0.97925 1.03642 0.96428 1.22987 0.96617 0.98248 1.03874 1.21130 0.96883 0.98492 0.95201 1.21627 0.97790 0.93172 1.02282 1.22290 0.96152 0.88661 1.00093 1.21982 0.95452 0.97388 0.91230 0.93006 0.99100 0.95296 0.91193 0.95230 0.94567 0.90900 0.94653 0.91102 0.91560 0.91709 0.91810 0.88999 0.88980 0.89054 0.89067 0.91713 0.91832 0.91583 0.91094 0.90931 0.94581 0.95408 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.38 8.47 -34.44 -0.29 -14.67 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 10 N -0.54 -12.01 4.70 -235.90 -1.11 -13.12 16 11 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 12 C 0.06 0.91 5.23 -3.77 -0.02 0.89 16 13 N -0.54 -8.07 4.58 -226.55 -1.04 -9.11 16 14 C 0.09 1.08 1.86 -67.77 -0.13 0.95 16 15 C -0.11 -1.20 5.06 -26.67 -0.13 -1.34 16 16 C -0.08 -0.73 5.67 -26.56 -0.15 -0.88 16 17 C -0.12 -1.05 1.97 -154.53 -0.31 -1.35 16 18 C -0.17 -1.42 9.93 -26.80 -0.27 -1.69 16 19 C -0.18 -1.39 9.99 -26.82 -0.27 -1.66 16 20 C -0.08 -0.72 5.67 -26.56 -0.15 -0.87 16 21 C -0.11 -1.19 4.96 -26.67 -0.13 -1.32 16 22 C 0.06 0.91 5.31 -3.76 -0.02 0.89 16 23 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 27 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.98 5.99 -51.93 -0.31 0.67 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.74 6.16 -51.93 -0.32 0.42 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.07 0.71 6.10 -51.93 -0.32 0.39 16 43 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.07 1.05 6.06 -51.93 -0.31 0.73 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 1.82 6.79 -51.93 -0.35 1.46 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -29.74 351.56 -11.88 -41.62 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.72 Total: -3.13 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.03 Total: -12.04 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -1.41 Total: -48.53 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.74 -11.88 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.298 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds