Wall clock time and date at job start Tue Mar 31 2020 00:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47096 * 300.00735 * 3 2 1 6 6 H 1.48500 * 109.46942 * 60.00320 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.52940 * 109.41307 * 176.56463 * 14 13 12 16 16 C 1.53171 * 109.45035 * 176.91326 * 15 14 13 17 17 C 1.53159 * 108.88622 * 56.56678 * 16 15 14 18 18 C 1.52846 * 117.68267 * 91.49565 * 17 16 15 19 19 C 1.52806 * 117.75068 * 160.37719 * 17 16 15 20 20 C 1.53154 * 115.00181 * 306.06072 * 17 16 15 21 21 C 1.52942 * 109.40874 * 56.20117 * 14 13 12 22 22 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 23 23 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 24 24 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 26 26 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 27 27 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 28 28 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 29 29 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 30 30 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 31 31 H 1.09001 * 109.41271 * 296.35039 * 14 13 12 32 32 H 1.09006 * 109.47394 * 296.91055 * 15 14 13 33 33 H 1.09001 * 109.47425 * 56.91522 * 15 14 13 34 34 H 1.08996 * 109.57183 * 296.74734 * 16 15 14 35 35 H 1.09009 * 109.66621 * 176.44174 * 16 15 14 36 36 H 1.08994 * 117.50312 * 215.22712 * 18 17 16 37 37 H 1.09011 * 117.50241 * 0.27048 * 18 17 16 38 38 H 1.09004 * 117.50226 * 359.84686 * 19 17 16 39 39 H 1.08996 * 117.50181 * 144.88715 * 19 17 16 40 40 H 1.08998 * 109.56629 * 294.11419 * 20 17 16 41 41 H 1.08997 * 109.66298 * 173.81800 * 20 17 16 42 42 H 1.08996 * 109.47473 * 303.08607 * 21 14 13 43 43 H 1.09009 * 109.47151 * 63.09568 * 21 14 13 44 44 H 1.09002 * 109.48908 * 180.71202 * 22 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 22 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 23 10 9 47 47 H 1.09004 * 109.48943 * 56.84596 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 4.9861 -7.2359 -2.2983 16 6 6.0361 -8.3508 -2.2728 17 6 5.3488 -9.6709 -1.9111 18 6 4.8359 -10.5419 -3.0576 19 6 6.0723 -10.9698 -2.2639 20 6 4.5279 -9.6403 -0.6185 21 6 3.5248 -8.4852 -0.6955 22 6 4.0043 -4.7809 -1.1842 23 6 2.9687 -3.6562 -1.2558 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 0.9734 -4.8433 1.1788 28 1 0.8254 -5.0915 -0.5780 29 1 3.2356 -5.8353 1.1420 30 1 2.0486 -6.9718 0.4571 31 1 5.0104 -7.0230 -0.1567 32 1 4.2580 -7.4402 -3.0834 33 1 5.4742 -6.2814 -2.4948 34 1 6.7967 -8.1191 -1.5273 35 1 6.5017 -8.4387 -3.2545 36 1 3.9139 -11.0994 -2.8926 37 1 4.9907 -10.1789 -4.0737 38 1 7.0406 -10.8884 -2.7579 39 1 5.9638 -11.8090 -1.5769 40 1 5.1923 -9.4908 0.2325 41 1 3.9918 -10.5822 -0.5021 42 1 2.9770 -8.4164 0.2443 43 1 2.8251 -8.6653 -1.5117 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4766 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:36 Heat of formation + Delta-G solvation = 4.798871 kcal Electronic energy + Delta-G solvation = -22460.253239 eV Core-core repulsion = 19449.083270 eV Total energy + Delta-G solvation = -3011.169969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 278.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95460 -39.53323 -37.12243 -34.94458 -33.59978 -32.51483 -31.32931 -29.87992 -27.69906 -25.81659 -25.01108 -23.54153 -23.19222 -22.92701 -21.57481 -20.60783 -19.49379 -18.49230 -17.58404 -16.57341 -16.19836 -16.05747 -15.85928 -15.78403 -15.49319 -15.18677 -14.92559 -14.40460 -14.26521 -14.08109 -13.74370 -13.42902 -13.28317 -13.05220 -12.92043 -12.71009 -12.60388 -12.47044 -12.28701 -12.20999 -12.09325 -11.99681 -11.86363 -11.65248 -11.45545 -11.15661 -10.79543 -10.78530 -10.63140 -10.42686 -9.28114 -9.03262 -8.21919 -6.32551 1.40259 1.40776 1.54728 2.39377 2.80044 3.02694 3.10250 3.29284 3.63866 3.83177 3.96585 3.99889 4.04156 4.13308 4.19964 4.26739 4.35764 4.45283 4.47271 4.49073 4.49803 4.61519 4.65186 4.81215 4.83231 4.85389 4.92462 4.95245 4.96835 4.99363 5.04228 5.09938 5.15619 5.17024 5.21033 5.27924 5.29047 5.34248 5.34880 5.49953 5.51878 5.62920 6.01442 6.11160 6.18957 6.36287 6.61600 6.83616 7.37383 8.89718 Molecular weight = 278.21amu Principal moments of inertia in cm(-1) A = 0.041882 B = 0.003249 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.385921 B = 8615.995370 C = 9003.752814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.545 5.545 11 C 0.055 3.945 12 C 0.069 3.931 13 N -0.543 5.543 14 C 0.090 3.910 15 C -0.106 4.106 16 C -0.075 4.075 17 C -0.130 4.130 18 C -0.176 4.176 19 C -0.171 4.171 20 C -0.074 4.074 21 C -0.107 4.107 22 C 0.069 3.931 23 C 0.070 3.930 24 H 0.265 0.735 25 H -0.041 1.041 26 H 0.003 0.997 27 H 0.070 0.930 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.032 0.968 46 H 0.014 0.986 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.322 -21.794 -4.015 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.270 5.270 11 C -0.074 4.074 12 C -0.059 4.059 13 N -0.268 5.268 14 C -0.017 4.017 15 C -0.144 4.144 16 C -0.113 4.113 17 C -0.130 4.130 18 C -0.213 4.213 19 C -0.208 4.208 20 C -0.112 4.112 21 C -0.144 4.144 22 C -0.059 4.059 23 C -0.058 4.058 24 H 0.074 0.926 25 H -0.024 1.024 26 H 0.021 0.979 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.172 -21.682 -4.009 25.186 hybrid contribution -0.329 1.251 0.029 1.294 sum 11.843 -20.431 -3.979 23.948 Atomic orbital electron populations 1.70096 1.07807 1.27908 1.51789 1.25952 0.95770 1.03320 0.94723 0.85297 0.78957 0.78362 0.77774 1.18632 1.20327 1.20309 1.21471 0.93572 0.91002 1.50054 0.91917 1.19351 0.90090 0.89077 0.93230 1.62227 1.27273 1.03075 1.34468 1.22167 0.95761 0.89623 0.99852 1.22120 0.95418 0.98049 0.90296 1.62197 1.26821 1.03286 1.34509 1.21616 0.92383 0.90363 0.97371 1.21554 0.97841 0.98687 0.96292 1.21094 0.96599 0.91903 1.01671 1.21507 1.02561 0.92132 0.96821 1.23044 0.98413 1.03539 0.96331 1.23044 0.96663 0.97573 1.03477 1.21092 0.96554 0.98100 0.95487 1.21584 0.97968 0.92935 1.01934 1.22125 0.94650 0.87954 1.01187 1.21966 0.95687 0.98424 0.89748 0.92634 1.02361 0.97873 0.91189 0.96192 0.94806 0.88212 0.94829 0.91889 0.91903 0.91500 0.90929 0.88810 0.88931 0.88399 0.88300 0.91475 0.90790 0.91530 0.91810 0.88705 0.94943 0.96755 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.52 -30.48 8.47 25.60 0.22 -30.26 16 8 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 11.66 4.72 85.56 0.40 12.07 16 10 N -0.55 -25.03 4.70 -900.26 -4.23 -29.26 16 11 C 0.05 2.09 5.61 86.31 0.48 2.58 16 12 C 0.07 2.08 5.23 86.31 0.45 2.53 16 13 N -0.54 -15.73 4.58 -870.66 -3.99 -19.71 16 14 C 0.09 2.04 1.86 44.87 0.08 2.12 16 15 C -0.11 -2.12 5.06 30.63 0.15 -1.97 16 16 C -0.07 -1.20 5.67 30.70 0.17 -1.03 16 17 C -0.13 -1.97 1.97 -52.19 -0.10 -2.07 16 18 C -0.18 -2.49 9.93 30.55 0.30 -2.19 16 19 C -0.17 -2.16 9.99 30.54 0.31 -1.86 16 20 C -0.07 -1.16 5.67 30.70 0.17 -0.98 16 21 C -0.11 -2.05 4.96 30.63 0.15 -1.90 16 22 C 0.07 2.19 5.31 86.31 0.46 2.65 16 23 C 0.07 2.90 5.43 86.31 0.47 3.36 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 26 H 0.00 0.19 8.03 -2.39 -0.02 0.17 16 27 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 2.50 5.99 -2.39 -0.01 2.48 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.06 1.29 6.16 -2.39 -0.01 1.27 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 42 H 0.07 1.27 6.10 -2.39 -0.01 1.25 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 2.61 6.06 -2.39 -0.01 2.60 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 2.97 6.79 -2.39 -0.02 2.96 16 Total: -1.00 -64.80 351.56 -0.81 -65.61 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.91 Total: 10.07 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.19 Total: -16.46 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -7.93 Total: -106.18 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.80 -0.81 -65.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.407 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds