Wall clock time and date at job start Tue Mar 31 2020 00:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47343 * 2 1 4 4 C 1.53003 * 109.47674 * 239.99022 * 2 1 3 5 5 C 1.50700 * 109.46773 * 65.00138 * 4 2 1 6 6 H 1.08005 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00151 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47087 * 60.00292 * 9 7 5 11 11 H 1.48498 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47254 * 300.00105 * 9 7 5 13 13 C 1.53002 * 109.46856 * 119.99201 * 2 1 3 14 14 N 1.46904 * 109.47279 * 295.00132 * 13 2 1 15 15 C 1.46900 * 111.00269 * 180.02562 * 14 13 2 16 16 C 1.50691 * 109.47094 * 180.02562 * 15 14 13 17 17 C 1.38628 * 120.40307 * 95.00397 * 16 15 14 18 18 C 1.38584 * 118.56035 * 180.02562 * 17 16 15 19 19 N 1.32289 * 119.19767 * 359.97438 * 18 17 16 20 20 C 1.32484 * 120.73975 * 0.02562 * 19 18 17 21 21 N 1.38411 * 119.21332 * 180.02562 * 20 19 18 22 22 C 1.46499 * 120.00229 * 359.97438 * 21 20 19 23 23 C 1.46502 * 119.99709 * 179.97438 * 21 20 19 24 24 N 1.32262 * 120.40224 * 275.28924 * 16 15 14 25 25 H 1.08997 * 109.47414 * 300.01002 * 1 2 3 26 26 H 1.09002 * 109.46613 * 60.01090 * 1 2 3 27 27 H 1.08996 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47034 * 184.99993 * 4 2 1 29 29 H 1.09001 * 109.46970 * 305.00551 * 4 2 1 30 30 H 0.97004 * 119.99850 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47261 * 175.00148 * 13 2 1 32 32 H 1.08994 * 109.47256 * 55.00173 * 13 2 1 33 33 H 1.00892 * 110.99675 * 56.04581 * 14 13 2 34 34 H 1.08997 * 109.47084 * 59.99787 * 15 14 13 35 35 H 1.09001 * 109.47196 * 300.00288 * 15 14 13 36 36 H 1.08004 * 120.71955 * 359.97438 * 17 16 15 37 37 H 1.07994 * 120.40210 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47391 * 270.00484 * 22 21 20 39 39 H 1.09001 * 109.46813 * 150.00540 * 22 21 20 40 40 H 1.09004 * 109.47041 * 30.00667 * 22 21 20 41 41 H 1.08994 * 109.47354 * 269.99632 * 23 21 20 42 42 H 1.09002 * 109.47278 * 29.99677 * 23 21 20 43 43 H 1.09006 * 109.46998 * 149.99198 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7215 -1.2491 5 6 1.6415 0.0567 -2.4765 6 1 1.0808 0.9743 -2.3758 7 6 1.9935 -0.4021 -3.7282 8 7 2.6767 -1.5192 -3.8508 9 14 1.4988 0.5620 -5.2496 10 1 2.0899 1.9229 -5.1872 11 1 1.9940 -0.1381 -6.4620 12 1 0.0188 0.6674 -5.3093 13 6 2.0399 -0.7211 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.1256 -0.6260 3.6673 16 6 1.7085 0.1792 4.8708 17 6 0.5429 -0.1321 5.5536 18 6 0.1954 0.6340 6.6550 19 7 0.9817 1.6332 7.0200 20 6 2.0893 1.9046 6.3456 21 7 2.8892 2.9571 6.7556 22 6 2.5070 3.7563 7.9225 23 6 4.1180 3.2719 6.0227 24 7 2.4471 1.1952 5.2851 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 3.1264 -0.7996 -1.2053 29 1 1.6055 -1.7200 -1.2949 30 1 2.9241 -1.8422 -4.7314 31 1 3.1263 -0.7993 1.2058 32 1 1.6053 -1.7196 1.2954 33 1 0.6528 0.1796 2.4753 34 1 3.2125 -0.7032 3.6403 35 1 1.6920 -1.6241 3.7304 36 1 -0.0813 -0.9534 5.2337 37 1 -0.7060 0.4174 7.2090 38 1 1.8852 4.5923 7.6024 39 1 3.4037 4.1367 8.4117 40 1 1.9478 3.1343 8.6215 41 1 4.9497 2.7122 6.4505 42 1 3.9964 2.9979 4.9748 43 1 4.3221 4.3401 6.0976 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602580765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:41 Heat of formation + Delta-G solvation = 50.938138 kcal Electronic energy + Delta-G solvation = -20959.882459 eV Core-core repulsion = 17847.172896 eV Total energy + Delta-G solvation = -3112.709564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05683 -37.39457 -36.64318 -34.63332 -33.23441 -32.02502 -31.04593 -28.51679 -27.31197 -26.51981 -25.89126 -24.71174 -22.96291 -22.16116 -21.39228 -19.01089 -17.79009 -17.40535 -16.39618 -15.87159 -15.74382 -15.27017 -14.79393 -14.69645 -14.43007 -14.25645 -13.83949 -13.72129 -13.30986 -12.78270 -12.59610 -12.41511 -12.32062 -12.16478 -11.90058 -11.72599 -11.34312 -11.00790 -10.86982 -10.73352 -10.71101 -10.36037 -10.30032 -10.17947 -9.70535 -9.20575 -9.07531 -8.94684 -8.31080 -8.19905 -8.01867 -5.95981 -3.97040 1.06893 1.14044 2.52845 3.35869 3.40104 3.42797 3.77266 3.99316 4.32183 4.47455 4.51618 4.73767 4.95260 5.08237 5.11827 5.13407 5.20671 5.37192 5.39838 5.45774 5.53531 5.62708 5.68460 5.73664 5.76946 5.84610 6.06230 6.19443 6.25067 6.46087 6.56648 6.64178 6.82639 6.92406 7.11497 7.17870 7.30056 7.33095 7.59032 7.71519 7.87573 8.04299 8.23181 8.48141 9.09043 9.66220 11.15544 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.002844 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.853331 B = 9844.428913 C =10260.915269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.066 3.934 14 N -0.679 5.679 15 C 0.104 3.896 16 C 0.231 3.769 17 C -0.289 4.289 18 C 0.190 3.810 19 N -0.575 5.575 20 C 0.560 3.440 21 N -0.595 5.595 22 C 0.105 3.895 23 C 0.102 3.898 24 N -0.547 5.547 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 5.035 23.896 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.312 5.312 15 C -0.026 4.026 16 C 0.081 3.919 17 C -0.315 4.315 18 C 0.023 3.977 19 N -0.298 5.298 20 C 0.205 3.795 21 N -0.313 5.313 22 C -0.039 4.039 23 C -0.041 4.041 24 N -0.269 5.269 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.157 0.843 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.688 6.278 24.083 24.898 hybrid contribution -1.409 -0.973 -1.106 2.039 sum -2.097 5.305 22.977 23.675 Atomic orbital electron populations 1.21744 0.96696 1.00438 1.00270 1.21227 0.94854 1.00180 0.94033 0.91595 1.19103 0.96178 0.95340 0.90269 1.21203 1.34694 1.08266 0.91005 0.92634 1.25014 0.95332 0.95099 0.99077 1.69955 1.39042 1.21224 1.23480 0.86690 0.78845 0.80164 0.82491 1.20266 1.21382 1.20330 1.22180 1.00640 0.94371 0.89036 1.60510 1.19658 1.50471 1.00530 1.20859 1.02201 0.93130 0.86361 1.21356 0.88615 0.88919 0.92975 1.22417 1.01184 1.06343 1.01581 1.22841 0.95924 0.87169 0.91815 1.67850 1.06526 1.21516 1.33912 1.19267 0.86448 0.87585 0.86204 1.45847 1.23697 1.30207 1.31516 1.21590 1.00389 0.94916 0.86969 1.21648 0.84232 1.00046 0.98205 1.67715 1.35537 1.08919 1.14743 0.95058 0.91840 0.93955 0.96596 0.96712 0.93047 0.91137 0.95540 0.84250 0.88986 0.93200 0.84107 0.81755 0.93153 0.91467 0.90293 0.93145 0.89622 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.13 5.14 -3.82 -0.02 1.11 16 14 N -0.68 -10.21 6.49 -115.06 -0.75 -10.96 16 15 C 0.10 1.33 6.04 -4.98 -0.03 1.30 16 16 C 0.23 3.00 6.33 -82.27 -0.52 2.48 16 17 C -0.29 -3.08 9.83 -39.31 -0.39 -3.46 16 18 C 0.19 1.95 11.30 -17.23 -0.19 1.76 16 19 N -0.58 -7.21 9.11 -13.93 -0.13 -7.33 16 20 C 0.56 7.60 8.17 -322.80 -2.64 4.96 16 21 N -0.60 -6.72 3.37 -191.89 -0.65 -7.36 16 22 C 0.10 0.86 10.44 59.85 0.62 1.48 16 23 C 0.10 0.97 10.44 59.85 0.62 1.59 16 24 N -0.55 -7.88 9.05 -10.15 -0.09 -7.97 16 25 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.34 4.87 6.98 -39.30 -0.27 4.60 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 40 H 0.08 0.69 7.33 -51.93 -0.38 0.31 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.99 7.33 -51.93 -0.38 0.61 16 43 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -32.46 353.73 -10.68 -43.14 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.16 Total: 0.18 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.96 Total: -5.50 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.88 Total: -59.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.46 -10.68 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602580765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.077 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds