Wall clock time and date at job start Tue Mar 31 2020 00:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47343 * 2 1 4 4 C 1.53003 * 109.47674 * 239.99022 * 2 1 3 5 5 C 1.50700 * 109.46773 * 65.00138 * 4 2 1 6 6 H 1.08005 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00151 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47087 * 60.00292 * 9 7 5 11 11 H 1.48498 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47254 * 300.00105 * 9 7 5 13 13 C 1.53002 * 109.46856 * 119.99201 * 2 1 3 14 14 N 1.46904 * 109.47279 * 295.00132 * 13 2 1 15 15 C 1.46900 * 111.00269 * 180.02562 * 14 13 2 16 16 C 1.50691 * 109.47094 * 180.02562 * 15 14 13 17 17 C 1.38628 * 120.40307 * 95.00397 * 16 15 14 18 18 C 1.38584 * 118.56035 * 180.02562 * 17 16 15 19 19 N 1.32289 * 119.19767 * 359.97438 * 18 17 16 20 20 C 1.32484 * 120.73975 * 0.02562 * 19 18 17 21 21 N 1.38411 * 119.21332 * 180.02562 * 20 19 18 22 22 C 1.46499 * 120.00229 * 359.97438 * 21 20 19 23 23 C 1.46502 * 119.99709 * 179.97438 * 21 20 19 24 24 N 1.32262 * 120.40224 * 275.28924 * 16 15 14 25 25 H 1.08997 * 109.47414 * 300.01002 * 1 2 3 26 26 H 1.09002 * 109.46613 * 60.01090 * 1 2 3 27 27 H 1.08996 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47034 * 184.99993 * 4 2 1 29 29 H 1.09001 * 109.46970 * 305.00551 * 4 2 1 30 30 H 0.97004 * 119.99850 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47261 * 175.00148 * 13 2 1 32 32 H 1.08994 * 109.47256 * 55.00173 * 13 2 1 33 33 H 1.00892 * 110.99675 * 56.04581 * 14 13 2 34 34 H 1.08997 * 109.47084 * 59.99787 * 15 14 13 35 35 H 1.09001 * 109.47196 * 300.00288 * 15 14 13 36 36 H 1.08004 * 120.71955 * 359.97438 * 17 16 15 37 37 H 1.07994 * 120.40210 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47391 * 270.00484 * 22 21 20 39 39 H 1.09001 * 109.46813 * 150.00540 * 22 21 20 40 40 H 1.09004 * 109.47041 * 30.00667 * 22 21 20 41 41 H 1.08994 * 109.47354 * 269.99632 * 23 21 20 42 42 H 1.09002 * 109.47278 * 29.99677 * 23 21 20 43 43 H 1.09006 * 109.46998 * 149.99198 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7215 -1.2491 5 6 1.6415 0.0567 -2.4765 6 1 1.0808 0.9743 -2.3758 7 6 1.9935 -0.4021 -3.7282 8 7 2.6767 -1.5192 -3.8508 9 14 1.4988 0.5620 -5.2496 10 1 2.0899 1.9229 -5.1872 11 1 1.9940 -0.1381 -6.4620 12 1 0.0188 0.6674 -5.3093 13 6 2.0399 -0.7211 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.1256 -0.6260 3.6673 16 6 1.7085 0.1792 4.8708 17 6 0.5429 -0.1321 5.5536 18 6 0.1954 0.6340 6.6550 19 7 0.9817 1.6332 7.0200 20 6 2.0893 1.9046 6.3456 21 7 2.8892 2.9571 6.7556 22 6 2.5070 3.7563 7.9225 23 6 4.1180 3.2719 6.0227 24 7 2.4471 1.1952 5.2851 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 3.1264 -0.7996 -1.2053 29 1 1.6055 -1.7200 -1.2949 30 1 2.9241 -1.8422 -4.7314 31 1 3.1263 -0.7993 1.2058 32 1 1.6053 -1.7196 1.2954 33 1 0.6528 0.1796 2.4753 34 1 3.2125 -0.7032 3.6403 35 1 1.6920 -1.6241 3.7304 36 1 -0.0813 -0.9534 5.2337 37 1 -0.7060 0.4174 7.2090 38 1 1.8852 4.5923 7.6024 39 1 3.4037 4.1367 8.4117 40 1 1.9478 3.1343 8.6215 41 1 4.9497 2.7122 6.4505 42 1 3.9964 2.9979 4.9748 43 1 4.3221 4.3401 6.0976 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602580765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:40 Heat of formation + Delta-G solvation = 31.749539 kcal Electronic energy + Delta-G solvation = -20960.714539 eV Core-core repulsion = 17847.172896 eV Total energy + Delta-G solvation = -3113.541644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92442 -38.62719 -37.64621 -35.99105 -34.66655 -33.61979 -32.08245 -29.39899 -28.90430 -27.88026 -26.67961 -26.24069 -24.21651 -23.55458 -22.30690 -20.67559 -18.69234 -18.55856 -18.20782 -16.84895 -16.74138 -16.55858 -16.25469 -15.73187 -15.52673 -15.44602 -14.88497 -14.75636 -14.62447 -14.25799 -13.92659 -13.43621 -13.38454 -13.23630 -13.10561 -13.05739 -12.81405 -12.75307 -12.55552 -12.22013 -11.95294 -11.85673 -11.63130 -11.48517 -11.15748 -11.05450 -10.92551 -10.51583 -10.00981 -9.37871 -8.82963 -8.16313 -6.25148 0.16403 0.31357 1.40667 1.43294 1.50951 1.76815 2.42894 2.83867 3.11538 3.17098 3.41728 3.61914 3.78094 4.16234 4.22044 4.27474 4.34700 4.41147 4.42867 4.47818 4.50616 4.56889 4.70411 4.77609 4.79104 4.86359 4.89185 4.94150 4.95879 5.05259 5.25229 5.38686 5.41743 5.50132 5.56384 5.80780 5.90291 5.90803 5.96630 6.03877 6.32456 6.42617 6.48977 6.90550 7.35640 7.42853 8.95526 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.002844 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.853331 B = 9844.428913 C =10260.915269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.050 0.950 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.080 3.920 14 N -0.685 5.685 15 C 0.109 3.891 16 C 0.210 3.790 17 C -0.283 4.283 18 C 0.188 3.812 19 N -0.586 5.586 20 C 0.539 3.461 21 N -0.602 5.602 22 C 0.104 3.896 23 C 0.104 3.896 24 N -0.576 5.576 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.046 0.954 28 H -0.013 1.013 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.345 0.655 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.204 0.796 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 5.743 25.114 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.048 4.048 14 N -0.318 5.318 15 C -0.020 4.020 16 C 0.062 3.938 17 C -0.308 4.308 18 C 0.021 3.979 19 N -0.309 5.309 20 C 0.183 3.817 21 N -0.320 5.320 22 C -0.038 4.038 23 C -0.039 4.039 24 N -0.300 5.300 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.005 0.995 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.186 0.814 37 H 0.220 0.780 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.204 7.002 25.322 26.365 hybrid contribution -0.929 -1.200 -1.409 2.071 sum -3.133 5.802 23.913 24.806 Atomic orbital electron populations 1.21640 0.94863 1.00926 1.00882 1.21012 0.96306 0.98803 0.93339 0.93098 1.18991 0.94252 0.94694 0.92447 1.21617 1.34512 1.08544 0.92170 0.92281 1.25928 0.95275 0.96101 1.02572 1.70089 1.40231 1.22894 1.24332 0.85585 0.78959 0.78744 0.78280 1.19467 1.20964 1.19161 1.21852 0.99843 0.94482 0.88662 1.60363 1.20150 1.50684 1.00585 1.20827 1.01660 0.94114 0.85395 1.21463 0.89745 0.89158 0.93470 1.22690 1.00314 1.06766 1.01073 1.23545 0.96508 0.86087 0.91732 1.67942 1.06552 1.22421 1.34011 1.19623 0.87285 0.88332 0.86467 1.46180 1.23741 1.29911 1.32163 1.21714 1.01607 0.94423 0.86046 1.21661 0.83974 1.01640 0.96647 1.67676 1.36664 1.09937 1.15705 0.91840 0.93764 0.93497 0.99500 0.98760 0.92928 0.92291 0.94629 0.83550 0.90134 0.90822 0.81370 0.77971 0.92892 0.88964 0.90913 0.92658 0.92131 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16 2 C -0.08 -3.11 2.55 -10.79 -0.03 -3.14 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.23 8.41 25.60 0.22 -30.02 16 6 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 C 0.08 2.73 5.14 86.30 0.44 3.17 16 14 N -0.68 -19.83 6.49 -517.94 -3.36 -23.19 16 15 C 0.11 2.67 6.04 85.55 0.52 3.19 16 16 C 0.21 5.20 6.33 42.58 0.27 5.47 16 17 C -0.28 -5.29 9.83 22.45 0.22 -5.07 16 18 C 0.19 3.38 11.30 84.71 0.96 4.34 16 19 N -0.59 -13.82 9.11 -197.99 -1.80 -15.63 16 20 C 0.54 14.28 8.17 261.48 2.14 16.42 16 21 N -0.60 -13.16 3.37 -761.01 -2.57 -15.73 16 22 C 0.10 1.57 10.44 127.77 1.33 2.90 16 23 C 0.10 1.93 10.44 127.77 1.33 3.26 16 24 N -0.58 -16.49 9.05 -186.03 -1.68 -18.17 16 25 H 0.06 1.87 6.68 -2.39 -0.02 1.86 16 26 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.34 9.19 6.98 -89.70 -0.63 8.56 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.89 8.07 -2.39 -0.02 0.87 16 40 H 0.07 1.18 7.33 -2.38 -0.02 1.17 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.44 7.33 -2.39 -0.02 1.42 16 43 H 0.09 1.20 8.07 -2.38 -0.02 1.18 16 Total: -1.00 -71.42 353.73 1.88 -69.54 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.36 Total: 14.52 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 8.63 Total: -1.09 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -9.13 Total: -129.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.42 1.88 -69.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602580765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.285 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds