Wall clock time and date at job start Tue Mar 31 2020 00:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47076 * 2 1 4 4 C 1.52999 * 109.47304 * 239.99826 * 2 1 3 5 5 C 1.50706 * 109.46823 * 64.99998 * 4 2 1 6 6 H 1.07998 * 120.00369 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99654 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99978 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47365 * 59.99846 * 9 7 5 11 11 H 1.48494 * 109.47068 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47003 * 299.99791 * 9 7 5 13 13 C 1.52999 * 109.47071 * 119.99755 * 2 1 3 14 14 N 1.46894 * 109.47194 * 295.00422 * 13 2 1 15 15 C 1.46907 * 110.99970 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46895 * 325.00010 * 15 14 13 17 17 C 1.52996 * 109.47363 * 84.99922 * 15 14 13 18 18 C 1.50699 * 109.47070 * 205.00079 * 15 14 13 19 19 N 1.30511 * 126.37007 * 314.95532 * 18 15 14 20 20 N 1.28571 * 109.66491 * 179.97438 * 19 18 15 21 21 C 1.30678 * 109.63556 * 359.91167 * 20 19 18 22 22 N 1.35163 * 107.33303 * 0.18783 * 21 20 19 23 23 C 1.46806 * 111.14985 * 179.75426 * 22 21 20 24 24 C 1.54757 * 105.58821 * 16.98898 * 23 22 21 25 25 C 1.51341 * 142.71644 * 180.15135 * 21 20 19 26 26 H 1.09005 * 109.47144 * 60.00320 * 1 2 3 27 27 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47158 * 299.99816 * 1 2 3 29 29 H 1.09000 * 109.47081 * 184.99455 * 4 2 1 30 30 H 1.08996 * 109.47674 * 305.00272 * 4 2 1 31 31 H 0.97010 * 120.00229 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47230 * 174.99817 * 13 2 1 33 33 H 1.09005 * 109.46783 * 55.00511 * 13 2 1 34 34 H 1.00900 * 111.00241 * 303.95317 * 14 13 2 35 35 H 1.09004 * 109.46767 * 59.99563 * 17 15 14 36 36 H 1.08990 * 109.47309 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.46823 * 300.00489 * 17 15 14 38 38 H 1.08998 * 110.23118 * 136.02541 * 23 22 21 39 39 H 1.08996 * 110.22557 * 257.98157 * 23 22 21 40 40 H 1.09002 * 111.07778 * 216.31103 * 24 23 22 41 41 H 1.09001 * 110.97972 * 92.47716 * 24 23 22 42 42 H 1.09002 * 110.47615 * 282.24141 * 25 21 20 43 43 H 1.09001 * 110.47451 * 44.71993 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 2.6774 -1.5182 -3.8510 9 14 1.4998 0.5634 -5.2496 10 1 2.0918 1.9238 -5.1865 11 1 1.9947 -0.1367 -6.4620 12 1 0.0198 0.6699 -5.3096 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1247 -0.6271 3.6672 16 1 2.0807 -1.7079 3.5332 17 6 3.5683 -0.2066 3.9499 18 6 1.2491 -0.2288 4.8273 19 7 0.8412 0.9782 5.1103 20 7 0.1106 0.9512 6.1679 21 6 0.0181 -0.2764 6.6064 22 7 0.7389 -1.0576 5.7715 23 6 0.6966 -2.4633 6.1929 24 6 -0.5000 -2.5692 7.1685 25 6 -0.5991 -1.1211 7.7000 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1264 -0.7994 -1.2055 30 1 1.6055 -1.7198 -1.2952 31 1 2.9247 -1.8412 -4.7316 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 1.9880 0.9873 2.3967 35 1 3.6123 0.8742 4.0839 36 1 3.9194 -0.6993 4.8565 37 1 4.2016 -0.4948 3.1108 38 1 0.5382 -3.1107 5.3305 39 1 1.6222 -2.7320 6.7019 40 1 -0.2856 -3.2677 7.9774 41 1 -1.4100 -2.8540 6.6404 42 1 -0.0356 -1.0157 8.6271 43 1 -1.6415 -0.8422 7.8547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602598062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:14 Heat of formation + Delta-G solvation = 69.963162 kcal Electronic energy + Delta-G solvation = -21520.134735 eV Core-core repulsion = 18408.250159 eV Total energy + Delta-G solvation = -3111.884577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.42839 -37.74292 -37.25960 -34.86890 -32.61162 -31.95101 -30.02691 -29.22057 -27.69168 -26.72140 -25.25209 -23.73932 -22.82258 -22.23469 -21.10508 -20.33191 -19.08847 -17.25518 -16.67418 -16.23328 -15.33908 -15.01973 -14.95523 -14.56393 -14.31815 -14.06365 -13.80399 -13.57350 -13.41557 -12.89975 -12.67228 -12.21659 -12.13966 -11.98786 -11.83708 -11.61478 -11.52947 -11.34570 -11.29306 -10.82769 -10.76212 -10.32115 -10.28659 -10.26302 -10.19882 -9.69352 -9.19402 -9.02998 -8.92616 -8.31344 -8.19183 -5.96569 -3.97366 1.72690 2.27945 2.86059 3.36348 3.40182 3.43454 3.45746 3.91523 4.13736 4.20640 4.39399 4.43033 4.52264 4.78281 4.83768 4.91527 4.99910 5.10356 5.22782 5.37945 5.39394 5.40747 5.45686 5.58181 5.70531 5.84444 5.87624 6.01839 6.15049 6.18592 6.39467 6.54951 6.70808 6.72935 7.00866 7.18919 7.21586 7.30822 7.60820 7.70222 7.85729 8.03594 8.48054 8.77048 9.08753 9.66023 11.14979 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.033771 B = 0.003028 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.907701 B = 9243.586856 C = 9277.612361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.056 0.944 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.673 5.673 15 C 0.172 3.828 16 H 0.089 0.911 17 C -0.176 4.176 18 C 0.221 3.779 19 N -0.273 5.273 20 N -0.283 5.283 21 C 0.144 3.856 22 N -0.494 5.494 23 C 0.101 3.899 24 C -0.128 4.128 25 C -0.038 4.038 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.351 0.649 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -5.403 24.452 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.305 5.305 15 C 0.058 3.942 16 H 0.107 0.893 17 C -0.236 4.236 18 C -0.046 4.046 19 N -0.112 5.112 20 N -0.123 5.123 21 C -0.124 4.124 22 N -0.187 5.187 23 C -0.021 4.021 24 C -0.167 4.167 25 C -0.078 4.078 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.208 -4.329 24.102 24.697 hybrid contribution 0.930 -0.788 -0.949 1.545 sum -2.278 -5.117 23.153 23.821 Atomic orbital electron populations 1.21589 0.95697 1.00426 1.00334 1.21205 0.96051 0.99117 0.93737 0.92532 1.19110 0.95876 0.95504 0.90386 1.21213 1.34599 1.08306 0.90978 0.92558 1.25011 0.95319 0.95100 0.99086 1.69953 1.39100 1.21304 1.23463 0.86687 0.78935 0.80136 0.82431 1.20269 1.21399 1.20258 1.22224 0.97446 0.97462 0.89114 1.60330 1.63901 1.06331 0.99951 1.19680 0.89406 0.98964 0.86112 0.89275 1.22467 0.95746 1.03011 1.02335 1.24498 1.00672 0.86057 0.93394 1.74403 1.11325 1.17013 1.08486 1.74001 1.15816 1.15840 1.06685 1.25883 0.99803 0.89768 0.96923 1.47176 1.38794 1.10458 1.22307 1.22447 1.00825 0.78983 0.99881 1.22861 0.98079 0.96773 0.98959 1.20602 1.02431 0.90679 0.94066 0.92704 0.94352 0.93842 0.96894 0.96630 0.93071 0.95276 0.91652 0.82888 0.91185 0.92470 0.90899 0.88554 0.88877 0.87833 0.89139 0.88344 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.89 37.16 0.33 -2.15 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.07 1.11 4.87 -3.83 -0.02 1.09 16 14 N -0.67 -10.27 5.68 -107.95 -0.61 -10.89 16 15 C 0.17 2.20 3.13 -68.86 -0.22 1.99 16 16 H 0.09 1.04 7.80 -51.93 -0.40 0.64 16 17 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 18 C 0.22 3.13 7.14 -154.89 -1.11 2.02 16 19 N -0.27 -4.65 12.21 32.82 0.40 -4.25 16 20 N -0.28 -4.62 12.22 32.92 0.40 -4.21 16 21 C 0.14 1.74 8.69 -154.84 -1.35 0.40 16 22 N -0.49 -5.60 3.62 -109.19 -0.40 -6.00 16 23 C 0.10 0.62 7.78 -2.95 -0.02 0.60 16 24 C -0.13 -0.49 7.19 -24.98 -0.18 -0.67 16 25 C -0.04 -0.23 6.84 -26.74 -0.18 -0.42 16 26 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16 33 H 0.06 1.10 8.06 -51.93 -0.42 0.69 16 34 H 0.35 5.41 8.47 -39.29 -0.33 5.08 16 35 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.79 7.45 -51.93 -0.39 0.41 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -34.67 349.35 -9.63 -44.30 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.27 Total: -1.47 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.14 Total: -13.33 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.53 Total: -51.66 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.67 -9.63 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602598062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.264 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds