Wall clock time and date at job start Tue Mar 31 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50698 * 109.46984 * 294.99719 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47265 * 119.99969 * 9 7 5 12 12 H 1.48503 * 109.46681 * 239.99686 * 9 7 5 13 13 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 14 14 N 1.46896 * 109.47181 * 65.00049 * 13 2 1 15 15 C 1.46904 * 111.00016 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.44746 * 34.95557 * 15 14 13 17 17 C 1.53104 * 109.45288 * 154.88255 * 15 14 13 18 18 C 1.53447 * 109.54906 * 190.09311 * 17 15 14 19 19 C 1.50533 * 108.32155 * 310.26309 * 18 17 15 20 20 C 1.35593 * 124.29932 * 16.47813 * 19 18 17 21 21 N 1.32907 * 106.67204 * 180.14482 * 20 19 18 22 22 N 1.29025 * 108.63919 * 359.91259 * 21 20 19 23 23 N 1.29105 * 110.25485 * 0.02562 * 22 21 20 24 24 C 1.46498 * 126.00270 * 180.02562 * 23 22 21 25 25 C 1.50598 * 124.16299 * 0.16806 * 20 19 18 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 30 30 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 31 31 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.46873 * 184.99985 * 13 2 1 33 33 H 1.08997 * 109.47047 * 304.99674 * 13 2 1 34 34 H 1.00896 * 111.00229 * 56.04575 * 14 13 2 35 35 H 1.09001 * 109.45873 * 310.11456 * 17 15 14 36 36 H 1.09002 * 109.45427 * 70.06450 * 17 15 14 37 37 H 1.08992 * 109.67621 * 190.56350 * 18 17 15 38 38 H 1.09006 * 109.71249 * 69.97889 * 18 17 15 39 39 H 1.09003 * 109.46984 * 270.02241 * 24 23 22 40 40 H 1.09001 * 109.47287 * 30.02601 * 24 23 22 41 41 H 1.08994 * 109.46964 * 150.02920 * 24 23 22 42 42 H 1.09004 * 109.69032 * 256.82400 * 25 20 19 43 43 H 1.09000 * 109.69010 * 136.24351 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6764 -1.5189 3.8511 9 14 1.4985 0.5625 5.2497 10 1 0.7412 1.7737 4.8435 11 1 0.6451 -0.2872 6.1186 12 1 2.7164 0.9680 5.9963 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1256 -0.6264 -3.6672 16 1 2.0829 -1.7073 -3.5328 17 6 1.2343 -0.2240 -4.8452 18 6 1.5634 -1.1004 -6.0610 19 6 3.0554 -1.0909 -6.2612 20 6 3.9496 -0.6908 -5.3237 21 7 5.1556 -0.8218 -5.8667 22 7 5.0205 -1.2769 -7.0664 23 7 3.7709 -1.4521 -7.3399 24 6 3.2285 -1.9556 -8.6042 25 6 3.5731 -0.2035 -3.9494 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 2.9236 -1.8419 4.7316 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7197 -1.2952 34 1 1.9880 0.9873 -2.3967 35 1 0.1879 -0.3602 -4.5720 36 1 1.4112 0.8226 -5.0933 37 1 1.0714 -0.6989 -6.9468 38 1 1.2234 -2.1204 -5.8818 39 1 3.0381 -1.1191 -9.2767 40 1 3.9472 -2.6345 -9.0632 41 1 2.2966 -2.4877 -8.4134 42 1 3.6524 0.8830 -3.9105 43 1 4.2368 -0.6476 -3.2076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:59 Heat of formation + Delta-G solvation = 73.534440 kcal Electronic energy + Delta-G solvation = -21431.359732 eV Core-core repulsion = 18319.630018 eV Total energy + Delta-G solvation = -3111.729714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.56175 -38.35373 -35.85486 -35.14426 -33.35180 -31.82696 -30.44431 -28.98829 -28.00626 -26.70692 -25.24706 -23.90695 -22.60680 -21.84696 -21.58102 -20.05228 -18.85552 -17.30146 -16.98057 -16.32897 -15.46464 -15.06721 -14.56317 -14.49712 -14.18094 -14.02214 -13.97115 -13.81897 -13.22143 -13.14611 -12.76031 -12.34918 -12.13942 -12.00536 -11.69500 -11.50628 -11.40931 -11.32329 -10.95135 -10.85711 -10.75935 -10.62816 -10.27069 -10.20153 -10.12986 -9.68286 -9.12531 -9.00973 -8.91503 -8.30788 -8.15661 -5.95339 -3.96287 1.36070 2.09850 2.40568 3.33820 3.41449 3.45347 3.92044 4.13489 4.24118 4.50191 4.52511 4.57683 4.62110 4.66565 4.81515 5.04817 5.17392 5.23260 5.27487 5.40535 5.41976 5.60769 5.67649 5.72167 5.87967 5.93569 5.96682 6.06820 6.14334 6.19851 6.36203 6.43721 6.58062 6.69861 7.02834 7.19701 7.21724 7.35482 7.63217 7.72905 7.88234 8.05204 8.35201 8.49098 9.10500 9.67109 11.16252 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.002892 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.523549 B = 9678.129671 C =10091.747871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.678 5.678 15 C 0.089 3.911 16 H 0.081 0.919 17 C -0.103 4.103 18 C -0.043 4.043 19 C -0.020 4.020 20 C -0.009 4.009 21 N -0.262 5.262 22 N -0.102 5.102 23 N -0.288 5.288 24 C 0.081 3.919 25 C -0.064 4.064 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.340 0.660 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -0.023 -25.175 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.067 4.067 14 N -0.307 5.307 15 C -0.022 4.022 16 H 0.099 0.901 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.154 4.154 20 C -0.150 4.150 21 N -0.126 5.126 22 N -0.079 5.079 23 N -0.080 5.080 24 C -0.060 4.060 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.794 -0.551 -25.643 25.800 hybrid contribution -0.141 0.558 1.091 1.234 sum -2.934 0.007 -24.552 24.727 Atomic orbital electron populations 1.21587 0.95754 1.00518 1.00130 1.21200 0.95959 0.98957 0.94038 0.92779 1.19127 0.95962 0.95559 0.90468 1.21277 1.34426 1.08270 0.90980 0.92518 1.25028 0.95374 0.95103 0.99114 1.69977 1.39192 1.21261 1.23246 0.86583 0.78238 0.80132 0.83337 1.19753 1.21116 1.21134 1.22218 0.97484 0.97620 0.89337 1.60696 1.63084 1.05839 1.01104 1.21639 0.90198 0.99545 0.90838 0.90100 1.21568 1.01145 0.99156 0.92256 1.20213 0.86047 1.02010 0.99993 1.21937 0.97754 1.07179 0.88558 1.21642 0.88776 1.05982 0.98582 1.74828 1.22902 1.14452 1.00448 1.78580 0.98100 1.19615 1.11646 1.46837 1.05846 1.42510 1.12847 1.22235 1.00864 1.01298 0.81597 1.20832 0.98477 1.01302 0.89897 0.92834 0.93921 0.94214 0.96590 0.96891 0.93172 0.95455 0.91507 0.84221 0.89340 0.91426 0.90122 0.89612 0.89117 0.88028 0.88358 0.89825 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 2 C -0.08 -1.64 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.01 4.87 -3.83 -0.02 0.99 16 14 N -0.68 -8.78 5.70 -106.44 -0.61 -9.39 16 15 C 0.09 0.98 2.44 -67.44 -0.16 0.82 16 16 H 0.08 0.96 7.77 -51.93 -0.40 0.55 16 17 C -0.10 -0.87 5.51 -26.45 -0.15 -1.02 16 18 C -0.04 -0.30 5.94 -27.73 -0.16 -0.47 16 19 C -0.02 -0.21 6.76 -82.50 -0.56 -0.77 16 20 C -0.01 -0.12 7.11 -83.12 -0.59 -0.71 16 21 N -0.26 -4.07 12.40 33.16 0.41 -3.66 16 22 N -0.10 -1.41 13.19 60.35 0.80 -0.61 16 23 N -0.29 -2.92 3.73 -64.01 -0.24 -3.16 16 24 C 0.08 0.35 11.27 59.85 0.67 1.03 16 25 C -0.06 -0.77 5.57 -27.72 -0.15 -0.92 16 26 H 0.05 1.09 6.95 -51.93 -0.36 0.72 16 27 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.46 7.68 -51.92 -0.40 0.06 16 33 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.34 4.20 8.35 -39.29 -0.33 3.87 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.20 7.96 -51.93 -0.41 -0.22 16 42 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 43 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -33.64 345.32 -7.52 -41.16 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.27 Total: -2.48 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.53 Total: -17.43 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 1.10 Total: -43.17 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.64 -7.52 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.690 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds