Wall clock time and date at job start Tue Mar 31 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50698 * 109.46984 * 294.99719 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47265 * 119.99969 * 9 7 5 12 12 H 1.48503 * 109.46681 * 239.99686 * 9 7 5 13 13 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 14 14 N 1.46896 * 109.47181 * 65.00049 * 13 2 1 15 15 C 1.46904 * 111.00016 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.44746 * 34.95557 * 15 14 13 17 17 C 1.53104 * 109.45288 * 154.88255 * 15 14 13 18 18 C 1.53447 * 109.54906 * 190.09311 * 17 15 14 19 19 C 1.50533 * 108.32155 * 310.26309 * 18 17 15 20 20 C 1.35593 * 124.29932 * 16.47813 * 19 18 17 21 21 N 1.32907 * 106.67204 * 180.14482 * 20 19 18 22 22 N 1.29025 * 108.63919 * 359.91259 * 21 20 19 23 23 N 1.29105 * 110.25485 * 0.02562 * 22 21 20 24 24 C 1.46498 * 126.00270 * 180.02562 * 23 22 21 25 25 C 1.50598 * 124.16299 * 0.16806 * 20 19 18 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 30 30 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 31 31 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.46873 * 184.99985 * 13 2 1 33 33 H 1.08997 * 109.47047 * 304.99674 * 13 2 1 34 34 H 1.00896 * 111.00229 * 56.04575 * 14 13 2 35 35 H 1.09001 * 109.45873 * 310.11456 * 17 15 14 36 36 H 1.09002 * 109.45427 * 70.06450 * 17 15 14 37 37 H 1.08992 * 109.67621 * 190.56350 * 18 17 15 38 38 H 1.09006 * 109.71249 * 69.97889 * 18 17 15 39 39 H 1.09003 * 109.46984 * 270.02241 * 24 23 22 40 40 H 1.09001 * 109.47287 * 30.02601 * 24 23 22 41 41 H 1.08994 * 109.46964 * 150.02920 * 24 23 22 42 42 H 1.09004 * 109.69032 * 256.82400 * 25 20 19 43 43 H 1.09000 * 109.69010 * 136.24351 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6764 -1.5189 3.8511 9 14 1.4985 0.5625 5.2497 10 1 0.7412 1.7737 4.8435 11 1 0.6451 -0.2872 6.1186 12 1 2.7164 0.9680 5.9963 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1256 -0.6264 -3.6672 16 1 2.0829 -1.7073 -3.5328 17 6 1.2343 -0.2240 -4.8452 18 6 1.5634 -1.1004 -6.0610 19 6 3.0554 -1.0909 -6.2612 20 6 3.9496 -0.6908 -5.3237 21 7 5.1556 -0.8218 -5.8667 22 7 5.0205 -1.2769 -7.0664 23 7 3.7709 -1.4521 -7.3399 24 6 3.2285 -1.9556 -8.6042 25 6 3.5731 -0.2035 -3.9494 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 2.9236 -1.8419 4.7316 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7197 -1.2952 34 1 1.9880 0.9873 -2.3967 35 1 0.1879 -0.3602 -4.5720 36 1 1.4112 0.8226 -5.0933 37 1 1.0714 -0.6989 -6.9468 38 1 1.2234 -2.1204 -5.8818 39 1 3.0381 -1.1191 -9.2767 40 1 3.9472 -2.6345 -9.0632 41 1 2.2966 -2.4877 -8.4134 42 1 3.6524 0.8830 -3.9105 43 1 4.2368 -0.6476 -3.2076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602704241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:58 Heat of formation + Delta-G solvation = 50.481854 kcal Electronic energy + Delta-G solvation = -21432.359368 eV Core-core repulsion = 18319.630018 eV Total energy + Delta-G solvation = -3112.729349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.41628 -39.36455 -37.29041 -35.89357 -34.95855 -33.48760 -31.22561 -30.09779 -28.73060 -28.47776 -26.64550 -25.03509 -24.05244 -22.92815 -22.36031 -21.16488 -20.22796 -18.46751 -18.01247 -17.75728 -16.60925 -16.43563 -16.03354 -15.67548 -15.19913 -15.05943 -14.75296 -14.59827 -14.37414 -14.17963 -13.90778 -13.66029 -13.36053 -13.06950 -13.00730 -12.81702 -12.77772 -12.59711 -12.49962 -12.19518 -12.16078 -11.96211 -11.71435 -11.52296 -11.40554 -11.04188 -10.94861 -10.80309 -10.52089 -9.87895 -9.29868 -8.15661 -6.24483 0.55904 1.41114 1.41564 1.43845 1.50406 1.54601 2.43572 3.09512 3.18033 3.27189 3.67333 3.79299 3.86565 3.91359 4.19345 4.25740 4.29744 4.35336 4.46336 4.50752 4.56362 4.58450 4.61596 4.74982 4.82045 4.92124 4.96537 5.01083 5.08894 5.09493 5.18029 5.30683 5.34105 5.38938 5.52650 5.57689 5.61596 5.68387 5.86501 5.92794 6.12041 6.34191 6.55006 6.92564 7.43880 7.44562 8.96691 Molecular weight = 278.18amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.002892 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.523549 B = 9678.129671 C =10091.747871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.030 3.970 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.961 3.039 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.076 3.924 14 N -0.667 5.667 15 C 0.094 3.906 16 H 0.073 0.927 17 C -0.096 4.096 18 C -0.036 4.036 19 C -0.006 4.006 20 C -0.039 4.039 21 N -0.310 5.310 22 N -0.134 5.134 23 N -0.278 5.278 24 C 0.066 3.934 25 C -0.059 4.059 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.035 0.965 29 H -0.010 1.010 30 H -0.018 1.018 31 H 0.261 0.739 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.345 0.655 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 0.814 -27.022 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.007 4.007 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.208 1.208 13 C -0.053 4.053 14 N -0.297 5.297 15 C -0.017 4.017 16 H 0.092 0.908 17 C -0.134 4.134 18 C -0.076 4.076 19 C -0.141 4.141 20 C -0.181 4.181 21 N -0.173 5.173 22 N -0.112 5.112 23 N -0.071 5.071 24 C -0.073 4.073 25 C -0.100 4.100 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.008 0.992 30 H 0.001 0.999 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.376 0.290 -27.537 28.059 hybrid contribution 0.664 0.255 1.582 1.734 sum -4.713 0.545 -25.956 26.386 Atomic orbital electron populations 1.21483 0.94378 1.00418 1.00674 1.21010 0.96934 0.98375 0.92989 0.92757 1.19035 0.93939 0.94756 0.93004 1.21691 1.34077 1.08525 0.92030 0.91943 1.25973 0.95358 0.96120 1.02736 1.70116 1.40523 1.23060 1.24145 0.85459 0.78007 0.78953 0.79011 1.18388 1.20556 1.20752 1.21890 0.96456 0.97410 0.89592 1.60678 1.62740 1.05863 1.00405 1.21676 0.90141 0.98942 0.90940 0.90833 1.21522 1.00846 0.99708 0.91362 1.20390 0.83518 1.03008 1.00667 1.22415 0.99027 1.05028 0.87661 1.21895 0.89054 1.07594 0.99525 1.74746 1.24789 1.16161 1.01644 1.78466 1.00176 1.21147 1.11380 1.47290 1.04829 1.40800 1.14160 1.22788 1.02165 1.02588 0.79734 1.20751 0.98716 1.01266 0.89247 0.94628 0.90864 0.94622 0.99207 0.99920 0.93035 0.96792 0.91855 0.83577 0.88120 0.91044 0.86535 0.87804 0.86945 0.87382 0.85189 0.89545 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 8.89 71.98 0.64 -3.44 16 2 C -0.07 -2.95 2.48 -10.79 -0.03 -2.97 16 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 1.60 4.45 29.85 0.13 1.73 16 5 C -0.53 -29.77 8.41 25.60 0.22 -29.55 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.08 2.49 4.87 86.30 0.42 2.91 16 14 N -0.67 -16.31 5.70 -490.66 -2.80 -19.11 16 15 C 0.09 1.94 2.44 45.09 0.11 2.05 16 16 H 0.07 1.65 7.77 -2.39 -0.02 1.63 16 17 C -0.10 -1.30 5.51 30.78 0.17 -1.13 16 18 C -0.04 -0.36 5.94 29.95 0.18 -0.18 16 19 C -0.01 -0.11 6.76 41.50 0.28 0.17 16 20 C -0.04 -1.02 7.11 41.75 0.30 -0.72 16 21 N -0.31 -9.96 12.40 -48.99 -0.61 -10.56 16 22 N -0.13 -3.73 13.19 37.02 0.49 -3.24 16 23 N -0.28 -5.12 3.73 -356.42 -1.33 -6.45 16 24 C 0.07 0.36 11.27 127.77 1.44 1.80 16 25 C -0.06 -1.43 5.57 29.96 0.17 -1.26 16 26 H 0.03 1.40 6.95 -2.39 -0.02 1.38 16 27 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.01 0.49 7.68 -2.38 -0.02 0.47 16 33 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 34 H 0.35 8.00 8.35 -89.70 -0.75 7.25 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 42 H 0.09 1.97 7.95 -2.39 -0.02 1.96 16 43 H 0.06 1.72 7.77 -2.39 -0.02 1.71 16 Total: -1.00 -76.43 345.32 2.79 -73.65 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.24 Total: 7.06 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 4.49 Total: -30.43 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -3.96 Total: -97.12 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.43 2.79 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.128 kcal (2) G-P(sol) polarization free energy of solvation -76.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds